KEGG   Trichosurus vulpecula (common brushtail): 118843270
Entry
118843270         CDS       T10126                                 
Name
(RefSeq) DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
tvp  Trichosurus vulpecula (common brushtail)
Pathway
tvp03440  Homologous recombination
tvp03450  Non-homologous end-joining
tvp04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:tvp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    118843270
   03450 Non-homologous end-joining
    118843270
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    118843270
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tvp03032]
    118843270
   03400 DNA repair and recombination proteins [BR:tvp03400]
    118843270
DNA replication proteins [BR:tvp03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    118843270
DNA repair and recombination proteins [BR:tvp03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     118843270
    BRCA1-C complex
     118843270
   NHEJ (non-homologous end-joining)
    MRX complex
     118843270
SSDB
Motif
Pfam: AAA_23 Rad50_zn_hook AAA_21 SbcC_Walker_B SMC_N AAA_15 DUF2703 AAA_29 ABC_tran AAA_13
Other DBs
NCBI-GeneID: 118843270
NCBI-ProteinID: XP_036606715
Position
3:complement(23071370..23152271)
AA seq 1312 aa
MSRIEKMSIMGVRSFGIEDKDKQVITFFSPLTILVGPNGAGKTTIIECLKYVSTGDFPPG
TKGNTFVYDPKIAQETDVKAQIRLQFRDVNGELVAVQRSMVCTQKSKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISSLGVSKSVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALETLRSVRLNQSIRVKECQTELKYLKQNKEKACEIRDQIVSKEAQLASSKEF
VKSYDNELGPLKAHLKEIEQNLSKIVRLDNDIKALESRKKQMEKDNNELEQKMEKVFQGT
DEQLNDLYHNHQRTVREKERRLIDCQRELDRTNKESKLLNHEKSELLVEQGRLQLQADRH
QQNIRARDSLIQSLATHLELDGYERAPFNERQIKNFQKLVRDIEEKETEANRRMMNDFAG
KESMKQKQIDEIRDKKTGLERIIELKLEIQNKKQTELKNVKYELQELEGSSDRILELDQE
LGKTELELGKAEESSNIAALKEEVPALLREKGDLDRSLRKLDQEMEQLNLHTMTRTQMEM
LTRDKADKDEQIRKIKSRHNDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKFNKE
LASAEQNKNHINNELKQKEEQLAKYEDKLFDVCGSQDFESDLDKLMDEIEKSSKKRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQDVISDLQSKLRLAPDKLKSTESELK
RREKRRDEMMGLKPIRQNIIDLKEREIPELRNKLQSVNRDIEHLKGEIEEQETLLGTIIP
EEESAKACLTDVTIMERLQMELRDVERKIAQQAAKLQGVDLDRTVQQVNQEKQEKQHRLD
TVSSKIELNRKLIQDQQEQIQHLKSTVNELKSEKLQISSNLQRRQQLEEQTVELSTEVQS
LHREIKDSKEQLCPLEATLGKLQQEKEELINKKNTSNSAVQEKLNDIKEKVKNISSYMKD
IENYIQDGKDSYKVQKEAELNKVISQFNECEKQKDKISKDMETMRQDINMQKVQERWLQD
NLTLRKRNEELKEVEEERKQHLKEMGQMQVLQLKNEYQTLEEKIETLKRNHSLALGRQKG
YEEEILHFKRELREPQFSDAEEKYREMMIVMRTTELVNKDLDIYYKALDHAIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDTDENVSASDKRRNYNYRVVMIKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRIRKNIDQCSEIIKCSVSSLGSYVH
NT seq 3939 nt   +upstreamnt  +downstreamnt
atgtctaggatcgaaaagatgagcattatgggtgtgaggagttttggaatagaagacaag
gataagcaagttatcactttcttcagtcctttaacgattttggttggacccaatggtgcg
ggcaagacgaccatcattgaatgtctgaagtatgtttctactggagatttccctcctggt
accaaaggaaatacatttgtttatgatccaaagattgctcaagaaacagatgttaaagct
cagattcgtctacagtttcgtgatgtcaatggggaacttgtagctgtacagaggtcaatg
gtgtgtactcagaaaagcaaaaaaacagaatttaaaaccctggaaggagtcattactaga
acaaagcacggtgagaaggtgagcctcagctctaagtgtgcagaaatcgacagagagatg
atcagctcccttggtgtttccaaatccgtgctcaacaatgtcattttttgccatcaagaa
gattctaattggcctttaagtgaagggaaagccctgaaacagaaatttgatgagatcttt
tcagcgacaaggtacattaaagccttggagacacttcgttcagtgcgtctcaaccaaagc
attcgggtaaaggaatgtcagactgagctaaagtacctgaaacagaataaggaaaaagct
tgtgagattcgagatcagattgtcagcaaggaagctcagttagcatcttctaaagagttt
gtcaagtcttatgacaatgagcttggaccgctgaaggctcatctaaaggaaattgaacag
aatctttctaaaatagtgaggcttgacaatgacattaaagctctggaaagtagaaagaag
cagatggaaaaggacaacaatgaactggagcagaaaatggagaaggtatttcaagggact
gatgaacagctaaatgatttgtaccacaatcaccagagaacagtgagagaaaaggaaagg
agactgatcgactgtcagcgagagctggacagaacaaataaggagtctaagctgctgaat
catgaaaaatcagaactgcttgtggaacagggtcgtctgcaactacaagcagatcgccat
caacagaacatccgagctagagattcattaatacagtctttggcaacacatttagaatta
gatggttatgagcgggcaccatttaatgaaagacaaattaaaaattttcagaagcttgtg
agggacatagaagaaaaagaaacagaagctaataggcgaatgatgaatgactttgcagga
aaagaaagtatgaaacaaaaacagatagatgaaataagagataagaaaactggcctggaa
agaataattgaactgaaattagaaattcaaaataagaaacagactgagctgaaaaatgta
aaatatgaactgcaagagctagagggatcttcggacagaattcttgaactggaccaggaa
cttggaaaaactgaacttgaacttggcaaggcagaggagagcagtaacatagcagcactg
aaagaagaagtaccagcactgctccgggagaaaggagacctggacagaagccttcgtaaa
ttagaccaggagatggaacaattaaacctccacaccatgacgagaacccaaatggaaatg
ttgaccagagacaaagctgacaaagatgaacaaataagaaaaataaaatcaagacacaat
gatgaattaacttcattgttaggctattttcccaacaaaaagcaacttgaagactggctt
catagtaaatctaaagaaattaatcagacaagggacagacttgccaaatttaataaagaa
ctagcttcagcggaacaaaataaaaatcacatcaacaatgaactcaagcagaaggaagag
cagctggccaaatatgaagacaaactgtttgatgtctgtgggagtcaagattttgaaagt
gatttagacaaactaatggatgaaattgaaaaatcttctaaaaaacgagcaatgcttgct
ggagccacagcagtttactcccagtttattactcagctaactgatgaaaaccagtcatgt
tgccccgtatgtcaaagagtctttcagacagaggctgaactacaagatgtgataagtgat
ttgcaatccaagctacgccttgctccagacaaactcaagtcaacagaatctgagctgaag
agaagagaaaaaaggcgtgatgaaatgatggggctgaaaccaataagacaaaacataatt
gatttgaaggaaagagaaataccagaattgaggaataaactacagagtgtgaacagggac
atagagcatctaaagggtgaaatagaagaacaggagactctcttaggtactataatacct
gaagaagaaagtgctaaagcatgcttaacagatgttactatcatggaaaggttacagatg
gagcttagagatgttgaacgaaaaattgcacaacaagccgctaagctacaaggcgtagat
ttggatcgaactgttcaacaagtaaatcaagaaaagcaagaaaaacaacatagactggac
acagtctccagtaaaattgagctgaatcgtaagcttatacaagatcagcaggaacaaatc
cagcacctaaaaagcacagtaaatgaactgaaatcagagaaacttcagatatctagtaat
ctgcaacgtcgacagcagctggaggaacagactgtagaattgtctacagaagttcagtcc
ttacatcgagaaataaaagattcaaaagagcagctgtgtcctttggaagccactctggga
aaattgcagcaagaaaaagaagaattaattaacaaaaagaacacaagtaacagtgcagta
caggaaaaattaaatgatatcaaagagaaggttaaaaacatctctagttacatgaaagac
attgagaactatattcaagatggaaaagacagctacaaagtgcaaaaagaagcagaactc
aataaagtaataagtcagttcaatgaatgtgaaaaacaaaaagacaagataagtaaggac
atggagactatgagacaagacattaatatgcagaaggtgcaggaaaggtggctacaagat
aaccttactctgaggaagagaaatgaggaactgaaagaggttgaagaagaaagaaagcag
cacttaaaggagatgggacagatgcaggttttacagctgaaaaatgaatatcagacatta
gaagaaaaaatagaaacactgaaaagaaatcacagtttagcattaggacgacaaaaaggc
tatgaggaagaaattcttcatttcaagagagaactgcgggaacctcagttttctgatgct
gaggaaaagtaccgagaaatgatgattgtgatgagaacaacagaacttgtgaacaaggac
ctcgacatttattacaaggctttggaccacgcaataatgaagtttcatagcatgaaaatg
gaagaaattaataaaattattcgtgatctctggcgaagtacctaccgaggtcaagatatt
gaatatatagaaattcggtctgatacagatgaaaatgtgtcagcttctgacaaaaggagg
aattacaactatagagtagtaatgataaaaggagatacagccttggatatgcgaggacgg
tgcagtgccgggcaaaaggtgcttgcttctcttatcattcgcttggccctcgcagaaacc
ttctgtttgaactgtggcattcttgccttggatgagcctacaacaaacctcgatagagaa
aacattgaatctcttgcacatgccctggtggaaataataaagagtcgttcccaacaacgc
aacttccagcttcttgtgatcacccacgatgaagattttgtggagcttttgggtcgttct
gagtatgtggagaaattctacaggattagaaagaacatcgaccagtgctcagagataatc
aaatgtagcgtcagctccctgggctcttatgttcactga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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