KEGG   Trichosurus vulpecula (common brushtail): 118844980
Entry
118844980         CDS       T10126                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
tvp  Trichosurus vulpecula (common brushtail)
Pathway
tvp03013  Nucleocytoplasmic transport
tvp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tvp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    118844980
  09122 Translation
   03013 Nucleocytoplasmic transport
    118844980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tvp03019]
    118844980
   03041 Spliceosome [BR:tvp03041]
    118844980
Messenger RNA biogenesis [BR:tvp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     118844980
Spliceosome [BR:tvp03041]
 Complex C
  Other components
   EJC/TREX
    118844980
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    118844980
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st ANAPC4_WD40 WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_EML Beta-prop_Vps41 Beta-prop_IFT122_1st eIF2A Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_1st Beta-prop_HPS5 RMC1_N NBCH_WD40 WDR90_beta-prop_4th Beta-prop_EIPR1 B-prop_COPA_B_2nd Beta-prop_WDR75_1st Beta-prop_SPT8 PD40 Beta-prop_NUP159_NUP214 Beta-prop_Nup120_160 Beta-prop_NWD2_C Peptidase_S9_N Cytochrom_D1 DPPIV_N PROPPIN Beta-prop_WDR11_1st Beta-prop_ELP1_1st WD_LRWD1 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 118844980
NCBI-ProteinID: XP_036608895
Position
3:complement(94720057..94729982)
AA seq 351 aa
MAGASTLAGSSALGLGAVGGAWPWGISAGGPSRYVAGMQELFRSHSKTREFPAHSAKVHS
VAWSCDGRRLASGSFDKTASVFLLEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFVTASG
DKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQ
FKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPTGKYFA
TGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDK
LWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPNDS
NT seq 1056 nt   +upstreamnt  +downstreamnt
atggcgggcgcctcgaccctggcggggagctctgcgctggggctgggcgctgttgggggg
gcctggccctggggtatctctgcgggaggcccgtcccgctatgtggccgggatgcaggag
ctgttccggagccacagcaagactcgcgagttcccggcgcacagcgccaaggtgcactcg
gtggcctggagctgtgacgggcgccgcctggcctcgggctccttcgacaagacggccagc
gtcttcttgctggagaaggaccgcctggtaaaggaaaataactaccgagggcatggggac
agtgtggatcagctttgttggcacccgagtaatccagacctctttgtcactgcatctggg
gacaaaactattcgcatctgggatgttagaactacaaaatgcatcgccactgtgaatact
aaaggggagaatattaacatttgctggagtcctgatgggcagaccattgctgtgggcaac
aaagacgacgtggtcactttcatcgatgctaagacccaccgttccaaagcagaggagcag
tttaagtttgaagtaaacgaaatctcctggaataatgacaacaatatgttcttcctgaca
aatggcaatggttgtatcaacattctcagctatcctgagctgaagcctgtgcagtccatc
aatgctcatccttccaattgcatctgtatcaaatttgaccccacggggaagtactttgcc
acaggaagtgctgatgcactggttagcctttgggatgttgacgaattagtatgtgtgaga
tgtttttccagattggattggccagtgagaaccctcagctttagccacgatgggaagatg
cttgcatcagcatctgaagaccactttattgacattgctgaagtagagacaggtgataag
ctctgggaggtgcagtgtgagtctccgacattcacggtggcctggcatcccaaaagaccc
ctgttggcatttgcttgtgatgacaaagatggcaaatatgacagcagccgggaagcagga
actgtgaagttatttgggcttcctaatgactcttaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (43)   
   Pfam (43)   
All databases (47)   

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