ID A0A014Q9V2_9BURK Unreviewed; 177 AA.
AC A0A014Q9V2;
DT 11-JUN-2014, integrated into UniProtKB/TrEMBL.
DT 11-JUN-2014, sequence version 1.
DT 18-JUN-2025, entry version 40.
DE RecName: Full=Large ribosomal subunit protein uL6 {ECO:0000256|HAMAP-Rule:MF_01365};
GN Name=rplF {ECO:0000256|HAMAP-Rule:MF_01365};
GN ORFNames=AX13_02430 {ECO:0000313|EMBL:EXU79977.1};
OS Comamonas aquatica DA1877.
OC Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
OC Burkholderiales; Comamonadaceae; Comamonas.
OX NCBI_TaxID=1457173 {ECO:0000313|EMBL:EXU79977.1, ECO:0000313|Proteomes:UP000020766};
RN [1] {ECO:0000313|EMBL:EXU79977.1, ECO:0000313|Proteomes:UP000020766}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DA1877 {ECO:0000313|EMBL:EXU79977.1,
RC ECO:0000313|Proteomes:UP000020766};
RA Watson E., Macneil L.T., Ritter A.D., Yilmaz L.S., Rosebrock A.P.,
RA Caudy A.A., Walhout A.J.;
RT "Interspecies Systems Biology Uncovers Metabolites Affecting C. elegans
RT Gene Expression and Life History Traits.";
RL Submitted (JAN-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: This protein binds to the 23S rRNA, and is important in its
CC secondary structure. It is located near the subunit interface in the
CC base of the L7/L12 stalk, and near the tRNA binding site of the
CC peptidyltransferase center. {ECO:0000256|HAMAP-Rule:MF_01365,
CC ECO:0000256|RuleBase:RU003870}.
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000256|HAMAP-
CC Rule:MF_01365}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL6 family.
CC {ECO:0000256|ARBA:ARBA00009356, ECO:0000256|HAMAP-Rule:MF_01365,
CC ECO:0000256|RuleBase:RU003869}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EXU79977.1}.
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DR EMBL; JBOK01000011; EXU79977.1; -; Genomic_DNA.
DR RefSeq; WP_043383855.1; NZ_JBOK01000011.1.
DR AlphaFoldDB; A0A014Q9V2; -.
DR STRING; 225991.MA05_03185; -.
DR PATRIC; fig|1457173.3.peg.2157; -.
DR Proteomes; UP000020766; Unassembled WGS sequence.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; IEA:UniProtKB-UniRule.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:UniProtKB-UniRule.
DR GO; GO:0002181; P:cytoplasmic translation; IEA:TreeGrafter.
DR FunFam; 3.90.930.12:FF:000001; 50S ribosomal protein L6; 1.
DR FunFam; 3.90.930.12:FF:000002; 50S ribosomal protein L6; 1.
DR Gene3D; 3.90.930.12; Ribosomal protein L6, alpha-beta domain; 2.
DR HAMAP; MF_01365_B; Ribosomal_uL6_B; 1.
DR InterPro; IPR000702; Ribosomal_uL6-like.
DR InterPro; IPR036789; Ribosomal_uL6-like_a/b-dom_sf.
DR InterPro; IPR020040; Ribosomal_uL6_a/b-dom.
DR InterPro; IPR019906; Ribosomal_uL6_bac-type.
DR InterPro; IPR002358; Ribosomal_uL6_CS.
DR NCBIfam; TIGR03654; L6_bact; 1.
DR PANTHER; PTHR11655; 60S/50S RIBOSOMAL PROTEIN L6/L9; 1.
DR PANTHER; PTHR11655:SF14; LARGE RIBOSOMAL SUBUNIT PROTEIN UL6M; 1.
DR Pfam; PF00347; Ribosomal_L6; 2.
DR PIRSF; PIRSF002162; Ribosomal_L6; 1.
DR PRINTS; PR00059; RIBOSOMALL6.
DR SUPFAM; SSF56053; Ribosomal protein L6; 2.
DR PROSITE; PS00525; RIBOSOMAL_L6_1; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000020766};
KW Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274, ECO:0000256|HAMAP-
KW Rule:MF_01365};
KW Ribosomal protein {ECO:0000256|ARBA:ARBA00022980, ECO:0000256|HAMAP-
KW Rule:MF_01365};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_01365};
KW rRNA-binding {ECO:0000256|ARBA:ARBA00022730, ECO:0000256|HAMAP-
KW Rule:MF_01365}.
FT DOMAIN 11..82
FT /note="Large ribosomal subunit protein uL6 alpha-beta"
FT /evidence="ECO:0000259|Pfam:PF00347"
FT DOMAIN 90..164
FT /note="Large ribosomal subunit protein uL6 alpha-beta"
FT /evidence="ECO:0000259|Pfam:PF00347"
SQ SEQUENCE 177 AA; 18774 MW; BA62D49B1FCDFDFB CRC64;
MSRVAKANVT IPAGVDVSMT AETIKVKGKG GELSLALNPQ VVISNNEGKL SFVPANESRD
ADALAGTFRQ LVNNMVKGVT EGFEKKLTLI GVGYKAAVQG TKLNLAVGYS HPVNFEMPAG
ITITTPTPTE VVVKGADRQA VGQLAAEIRA VRPPEPYKGK GIRYADEKVV IKETKKK
//
