ID A0A0E0BHB7_9ORYZ Unreviewed; 483 AA.
AC A0A0E0BHB7;
DT 27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT 27-MAY-2015, sequence version 1.
DT 18-JUN-2025, entry version 49.
DE RecName: Full=HTH La-type RNA-binding domain-containing protein {ECO:0008006|Google:ProtNLM};
OS Oryza glumipatula.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM11G08180.1};
RN [1] {ECO:0000313|EnsemblPlants:OGLUM11G08180.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
RN [2] {ECO:0000313|EnsemblPlants:OGLUM11G08180.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Zhang J., Kudrna D., Lee S., Talag J., Welchert J., Wing R.A.;
RT "OgluRS3 (Oryza glumaepatula Reference Sequence Version 3).";
RL Submitted (MAY-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Transcriptional regulator. {ECO:0000256|ARBA:ARBA00002339}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR AlphaFoldDB; A0A0E0BHB7; -.
DR STRING; 40148.A0A0E0BHB7; -.
DR EnsemblPlants; OGLUM11G08180.1; OGLUM11G08180.1; OGLUM11G08180.
DR Gramene; OGLUM11G08180.1; OGLUM11G08180.1; OGLUM11G08180.
DR eggNOG; KOG1855; Eukaryota.
DR HOGENOM; CLU_033595_1_0_1; -.
DR Proteomes; UP000026961; Chromosome 11.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:1990904; C:ribonucleoprotein complex; IEA:InterPro.
DR GO; GO:0003729; F:mRNA binding; IEA:TreeGrafter.
DR GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR CDD; cd08033; LARP_6; 1.
DR CDD; cd12288; RRM_La_like_plant; 1.
DR FunFam; 1.10.10.10:FF:000158; La ribonucleoprotein domain family member 7; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR034878; La-rel_plant_RRM.
DR InterPro; IPR045180; La_dom_prot.
DR InterPro; IPR006630; La_HTH.
DR InterPro; IPR002344; Lupus_La.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR009818; PAM2_motif.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR22792:SF171; LA-RELATED PROTEIN 6B; 1.
DR PANTHER; PTHR22792; LUPUS LA PROTEIN-RELATED; 1.
DR Pfam; PF05383; La; 1.
DR Pfam; PF07145; PAM2; 1.
DR PRINTS; PR00302; LUPUSLA.
DR SMART; SM00715; LA; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS50961; HTH_LA; 1.
DR PROSITE; PS50102; RRM; 1.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000026961};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00332}.
FT DOMAIN 121..212
FT /note="HTH La-type RNA-binding"
FT /evidence="ECO:0000259|PROSITE:PS50961"
FT DOMAIN 219..313
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 1..56
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 315..483
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 38..51
FT /note="Low complexity"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 324..335
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 374..391
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 392..413
FT /note="Low complexity"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 431..448
FT /note="Low complexity"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 469..483
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 483 AA; 51878 MW; B3D190E84C6DC6F0 CRC64;
MSQQEVADPA QAAEEEGPGE LPRSGSSSRL NAQAPEFVPR AAAAPPQAAV AAPPPPPQVI
RVFAAAPPPP PAAFFAAVPP PPPPPFEYYP AVGGGGGFGA PVELEAEAEQ QPPPGQQSGR
DGISDDVVHK ITKQVEYYFS DINLATTEHL MRFITKDPEG YVPISVVAGF KKIKALIQSN
AMLASALRTS SKLVVSNDGT RVKREQPFTE SDLEELQARI VVAENLPDDH CYQNLMKLFS
TVGSVKTIRT CYPQTPNGTG PVTNRSAKLD MLFANKLHAF VEYDTVEDAE KAIVELNDER
NWRNGLRVRL LNTCMTKGGK GKKGGHDIND GHGVEDDVST SNQSNEKHGE EALQTPDAQG
EQLPDESAGD MGRGRGKGRG RGGRGRGRGY HYHNNNQQSY HNHQQHNHQN SNNRNTAHPV
GTPPSNHPAK NEQQQQAQPQ PPAGANKQPP GPRMPDGTRG FAMGRGMPQT LTTTPSASSG
SEP
//
