ID A0A0E0R428_ORYRU Unreviewed; 345 AA.
AC A0A0E0R428;
DT 27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT 27-MAY-2015, sequence version 1.
DT 18-JUN-2025, entry version 40.
DE RecName: Full=RNA polymerase subunit H/Rpb5 C-terminal domain-containing protein {ECO:0008006|Google:ProtNLM};
OS Oryza rufipogon (Brownbeard rice) (Asian wild rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4529 {ECO:0000313|EnsemblPlants:ORUFI11G02620.2, ECO:0000313|Proteomes:UP000008022};
RN [1] {ECO:0000313|Proteomes:UP000008022}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. W1943 {ECO:0000313|Proteomes:UP000008022};
RA Zhao Q.;
RL Submitted (JUN-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EnsemblPlants:ORUFI11G02620.2}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (JUN-2015) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the archaeal Rpo5/eukaryotic RPB5 RNA polymerase
CC subunit family. {ECO:0000256|ARBA:ARBA00025765}.
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DR AlphaFoldDB; A0A0E0R428; -.
DR STRING; 4529.A0A0E0R428; -.
DR EnsemblPlants; ORUFI11G02620.2; ORUFI11G02620.2; ORUFI11G02620.
DR Gramene; ORUFI11G02620.2; ORUFI11G02620.2; ORUFI11G02620.
DR eggNOG; KOG3218; Eukaryota.
DR OMA; ITQMHVT; -.
DR Proteomes; UP000008022; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:InterPro.
DR GO; GO:0006366; P:transcription by RNA polymerase II; IEA:TreeGrafter.
DR GO; GO:0006362; P:transcription elongation by RNA polymerase I; IEA:TreeGrafter.
DR GO; GO:0042797; P:tRNA transcription by RNA polymerase III; IEA:TreeGrafter.
DR FunFam; 3.90.940.20:FF:000001; DNA-directed RNA polymerases I, II, and III subunit RPABC1; 1.
DR Gene3D; 3.40.1340.10; RNA polymerase, Rpb5, N-terminal domain; 1.
DR Gene3D; 3.90.940.20; RPB5-like RNA polymerase subunit; 1.
DR InterPro; IPR014381; Arch_Rpo5/euc_Rpb5.
DR InterPro; IPR005571; RNA_pol_Rpb5_N.
DR InterPro; IPR036710; RNA_pol_Rpb5_N_sf.
DR InterPro; IPR000783; RNA_pol_subH/Rpb5_C.
DR InterPro; IPR035913; RPB5-like_sf.
DR PANTHER; PTHR10535:SF2; DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A; 1.
DR PANTHER; PTHR10535; DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1; 1.
DR Pfam; PF01191; RNA_pol_Rpb5_C; 1.
DR Pfam; PF03871; RNA_pol_Rpb5_N; 1.
DR SUPFAM; SSF53036; Eukaryotic RPB5 N-terminal domain; 1.
DR SUPFAM; SSF55287; RPB5-like RNA polymerase subunit; 1.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000008022}.
FT DOMAIN 147..227
FT /note="RNA polymerase Rpb5 N-terminal"
FT /evidence="ECO:0000259|Pfam:PF03871"
FT DOMAIN 272..344
FT /note="RNA polymerase subunit H/Rpb5 C-terminal"
FT /evidence="ECO:0000259|Pfam:PF01191"
FT REGION 1..109
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..11
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 12..98
FT /note="Low complexity"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 345 AA; 37436 MW; AF84F6477BC36E2E CRC64;
MSHSSPYQQS FTTIESAESA TAATSIETAE STTAARDVSP PAAVSAARDV SPPPAAARDV
SPPAAASAAR DVSPPPAAAR DVSPPSAAHD VSPPAAVSAP PPAVVPAAAR DAPPPAVAMA
AEMEVDDVDV HEVPECIASM IDRGSVESHR LFLARRTAME MLRDRGYSVP EAEIARTLPE
FRAWWAEKPG IERLAFTTTL VSDPSKKVQL VFCPPEPVKI ATIREIYLQT KEENLSRLVL
ILQSKILSRA REAIKEIFKF KVDIFQATDL LVNITKHVLK PKHEVLSADQ KAKLLKEYNV
EDSQLPRMLE TDAVARYYGF DKGTVVKVIY DGELTGKRVA YRCVF
//
