ID A0A0V0V3T6_9BILA Unreviewed; 1405 AA.
AC A0A0V0V3T6;
DT 16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT 16-MAR-2016, sequence version 1.
DT 18-JUN-2025, entry version 38.
DE RecName: Full=Ribosome maturation protein SBDS {ECO:0000256|ARBA:ARBA00014814};
GN ORFNames=T09_5911 {ECO:0000313|EMBL:KRX58178.1};
OS Trichinella sp. T9.
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
OC Trichinellida; Trichinellidae; Trichinella.
OX NCBI_TaxID=181606 {ECO:0000313|EMBL:KRX58178.1, ECO:0000313|Proteomes:UP000054681};
RN [1] {ECO:0000313|EMBL:KRX58178.1, ECO:0000313|Proteomes:UP000054681}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ISS409 {ECO:0000313|EMBL:KRX58178.1};
RA Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
RT "Evolution of Trichinella species and genotypes.";
RL Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBUNIT: Associates with the 60S ribosomal subunit.
CC {ECO:0000256|ARBA:ARBA00049708}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton
CC {ECO:0000256|ARBA:ARBA00004245}. Nucleus
CC {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the SDO1/SBDS family.
CC {ECO:0000256|ARBA:ARBA00007433}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KRX58178.1}.
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DR EMBL; JYDN01000090; KRX58175.1; -; Genomic_DNA.
DR EMBL; JYDN01000090; KRX58178.1; -; Genomic_DNA.
DR Proteomes; UP000054681; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
DR GO; GO:0005874; C:microtubule; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0042256; P:cytosolic ribosome assembly; IEA:InterPro.
DR Gene3D; 3.30.70.240; -; 1.
DR Gene3D; 2.30.30.190; CAP Gly-rich-like domain; 2.
DR Gene3D; 3.30.1250.10; Ribosome maturation protein SBDS, N-terminal domain; 1.
DR Gene3D; 1.10.10.900; SBDS protein C-terminal domain, subdomain 1; 1.
DR InterPro; IPR036859; CAP-Gly_dom_sf.
DR InterPro; IPR000938; CAP-Gly_domain.
DR InterPro; IPR032108; CLIP1_ZNF.
DR InterPro; IPR018023; Ribosome_mat_SBDS_CS.
DR InterPro; IPR036786; Ribosome_mat_SBDS_N_sf.
DR InterPro; IPR002140; Sdo1/SBDS.
DR InterPro; IPR039100; Sdo1/SBDS-like.
DR InterPro; IPR046928; SDO1/SBDS_C.
DR InterPro; IPR018978; SDO1/SBDS_central.
DR InterPro; IPR037188; Sdo1/SBDS_central_sf.
DR InterPro; IPR019783; SDO1/SBDS_N.
DR NCBIfam; TIGR00291; RNA_SBDS; 1.
DR PANTHER; PTHR10927; RIBOSOME MATURATION PROTEIN SBDS; 1.
DR PANTHER; PTHR10927:SF1; RIBOSOME MATURATION PROTEIN SBDS; 1.
DR Pfam; PF01302; CAP_GLY; 2.
DR Pfam; PF16641; CLIP1_ZNF; 1.
DR Pfam; PF20268; SBDS_C; 1.
DR Pfam; PF09377; SBDS_domain_II; 1.
DR Pfam; PF01172; SBDS_N; 2.
DR SMART; SM01052; CAP_GLY; 2.
DR SUPFAM; SSF74924; Cap-Gly domain; 2.
DR SUPFAM; SSF89895; FYSH domain; 2.
DR SUPFAM; SSF109728; Hypothetical protein AF0491, middle domain; 1.
DR PROSITE; PS00845; CAP_GLY_1; 1.
DR PROSITE; PS50245; CAP_GLY_2; 2.
DR PROSITE; PS01267; UPF0023; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Cytoskeleton {ECO:0000256|ARBA:ARBA00023212};
KW Microtubule {ECO:0000256|ARBA:ARBA00022701};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000054681};
KW Ribosome biogenesis {ECO:0000256|ARBA:ARBA00022517}.
FT DOMAIN 62..104
FT /note="CAP-Gly"
FT /evidence="ECO:0000259|PROSITE:PS50245"
FT DOMAIN 163..205
FT /note="CAP-Gly"
FT /evidence="ECO:0000259|PROSITE:PS50245"
FT REGION 1014..1061
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 303..535
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 593..620
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 1405 AA; 159140 MW; 8B636CA806C08BBE CRC64;
MEKEDSKKPL KKSAIPRYAK LLTRINSKES LLSVSSCVAS KWLVGDRCYV GGTVPGRIAF
VGDTRFGPGE WAGIVLDEPV GKNNGSVAGV MYFQCAPNYG LFCRLSKLSK QPVVIQQPDA
ASAFRDESQQ ESASTAAEAD HNLRVGDRVS AGGCRRGVLR FLGPTDFAEG IWAGIELDQP
YGKNDGSVHR KRYFTCKPLY GLFAPAHKVV SETFPNFDTE TGKKTPIVRH NVASIVRTRR
NQSLMGSQES LTSLSSIHSS ASRRIRLGVN ALSTSCNTPL KNDLRRLKSD SLSPNSSSST
PTVTALHNAL KEKEQHVEQL IQERDADRSE LAQLLKTLEQ TKNEVENLRE EEKRTADDFR
IKIDFLQTAL ETSEKECKHW REMYETEKQK ADDLEFRMEE EMCSKNDLKL RISALEEERN
KTESQKLMTM EKYKNLQEEM KMLSAEHDQL KKELCDLRTL NSNAEIDDIK ENNSKLEEKC
KILMENFDNA QKNNSDLHHM LDQAKQELIQ AKEIAQKEKE NASTYAEKLK ELENSMLKQK
ILSESNAVTV DRKDSSTSFD MELCRAFSKI KLNETIESHE NKKSEEDESS KALLEANMKL
AVLEEKLNSE KNSFSNLDLE RRNQILQLQQ QIEKMNPILE SRQKEIDALK LDLSEKVDYC
CKVDAELNFL RNEVISLRQP NKQSLSSSKE TQTECDGLDT VQQSKVIEFL ESIIANEKVE
IDRFMNHPGL NCSNTLQENF VDPQSDISAL RQLRKFCDVC EIFDAHDTEE CELYKQELMN
HSNYGGDPLA VRPYCDRCET ELSEAKQVRA FPVTLSHSKD RTNNHTRSLQ PTHYRNPPSI
FKAVRVRCTT SPFMCSSSFP LLIVHVTYEI SQLRWSARAL PFVLYSPHLG VLLPTVIWFQ
AVEVYHQQLS SPPGTCFSPA SSGLRTNRPC KPPVWSMDFP VAFGTDVAAA LDLPSPVPPR
SAAPGPAATA VYTLLPTLLG WHPLCGERWT DRREGPDLGG HPNLRGDRWM PSRKGLAGCG
SSAPPSHRTA GGRLWSGFWS PRTSGTPPSR ARTRRSDPDL SVASPGINMS KIFTPTNQMR
HTNVAVVRMK KAGKRFEIAC YKNKVLNWRS KMEREVALAS SILTLMPHKS SEPLNEVKRL
VAWDPRPVLE IYDELASNAS TSLATAAHFP TWEQARNTMY YSRSKRYARL PLERDIDEVL
QTHHIFTNVS KGELAKKEDL LNAFATDNQT EICKVILEKG ELQISEKERK LYYESSFKEI
ANIIAGMCVD IKSKRPYSQA MIETALHEIH FSVRPRKSSK QQALDIIPRL KQHMPIDRAK
MVLRVECPAE LAKAAKEKLN EWVDSFELER WEENGDLLAI VIVEPSYFRQ IDSLVRSPTA
RGVVDVITVR QIVEEKIDIT EVETD
//
