ID A0A1R3KIC5_9ROSI Unreviewed; 1350 AA.
AC A0A1R3KIC5;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 08-OCT-2025, entry version 28.
DE SubName: Full=Zinc finger, CCCH-type {ECO:0000313|EMBL:OMP06748.1};
GN ORFNames=COLO4_07934 {ECO:0000313|EMBL:OMP06748.1};
OS Corchorus olitorius.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=93759 {ECO:0000313|EMBL:OMP06748.1, ECO:0000313|Proteomes:UP000187203};
RN [1] {ECO:0000313|Proteomes:UP000187203}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. O-4 {ECO:0000313|Proteomes:UP000187203};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M., Yahiya A.S., Khan M.S.,
RA Azam M.S., Haque T., Lashkar M.Z.H., Akhand A.I., Morshed G., Roy S.,
RA Uddin K.S., Rabeya T., Hossain A.S., Chowdhury A., Snigdha A.R.,
RA Mortoza M.S., Matin S.A., Hoque S.M.E., Islam M.K., Roy D.K., Haider R.,
RA Moosa M.M., Elias S.M., Hasan A.M., Jahan S., Shafiuddin M., Mahmood N.,
RA Shommy N.S.;
RT "Corchorus olitorius genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMP06748.1}.
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DR EMBL; AWUE01013504; OMP06748.1; -; Genomic_DNA.
DR STRING; 93759.A0A1R3KIC5; -.
DR OrthoDB; 3247158at2759; -.
DR Proteomes; UP000187203; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:TreeGrafter.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-KW.
DR FunFam; 4.10.1000.10:FF:000008; zinc finger CCCH domain-containing protein 3; 1.
DR FunFam; 4.10.1000.10:FF:000022; Zinc finger CCCH domain-containing protein 7; 1.
DR Gene3D; 4.10.1000.10; Zinc finger, CCCH-type; 2.
DR InterPro; IPR008906; HATC_C_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR000571; Znf_CCCH.
DR PANTHER; PTHR46156; CCCH ZINGC FINGER; 1.
DR PANTHER; PTHR46156:SF1; ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3; 1.
DR Pfam; PF05699; Dimer_Tnp_hAT; 1.
DR SMART; SM00356; ZnF_C3H1; 5.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50103; ZF_C3H1; 3.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU00723}; Reference proteome {ECO:0000313|Proteomes:UP000187203};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00723}.
FT DOMAIN 1121..1149
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT DOMAIN 1175..1201
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT DOMAIN 1224..1252
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT ZN_FING 1121..1149
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT ZN_FING 1175..1201
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT ZN_FING 1224..1252
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 262..345
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 474..722
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 739..779
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 264..274
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 294..305
FT /note="Low complexity"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 313..333
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 474..489
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 512..523
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 531..551
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 559..579
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 587..604
FT /note="Low complexity"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 605..623
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 644..654
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 698..717
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1350 AA; 151358 MW; 6F973576FB062914 CRC64;
MENPIQDILV DIEVDLNCSD CSDEVGGVSN DEINADSIQT KPTATASAST HAGNQANLLV
GINEALKDIF EDYVKVLNPA ATSSQSSQVQ QSSLMEEDGD YDAMAEFQKH QMESGGDEVK
TELDIYLQEE PEMQKKGVGD FDVLLWWKLN SPRFPILSSL AKVVLAVPVS IVASQSAFST
GGRVLDPYRS SLTPKLIQAL ICTQDRLEVS KEYDLAAETE EQKEMDKLGL AYMSVLAYSL
PKPTEPTDTL PMSELVHQLQ QPYHPLPAPP PPLPRQQHPN HHAYDPPLPQ YTYSPNFNSN
PNPSNVSLQF HDSPQRRVPE FDSRPDYWPD NRVSRPHPVS PPPISNLERE VHYHQFDRRP
ASPGIDRFRH ELEESSRIRA LELNQREREE LNRVHTDRWV SDRSSRDFGI VSMGFESNSN
NSGFDHEVSE NVRWGSHLHD QLIDNGNNDI QERDEMRGFT RKMDYLHDSE VEMFSDRASS
REDSHEFNRT PRKQIQKKSA LLRIQKAKPT HRSREDEKSH YSGEGKPGNS RGKDLVLHSD
QAKEEKEREG SPVELDVSFK SNSLVAKVTQ TTPSTNITKP RTWHRTNNSS ASPSPSSGNK
PSLSANPSQK QMPKKAASSQ GTSYIRKGNS LVRKPVSVPA PPQGSRSLRS TVYRLNSGVV
DEVKKGARPN SRADSVDLKR GGSTTFERPT TPPLPSVTKI SNRTPNSSGE CTETSLPEPS
ISDCCETTNN RASSMEITDV PNSSEDVLKT SETLNGNGSA NNSEDCTEQN ESNLAPSNAK
SVTYVKPKSN QLVATSDHGC ASTLNADKNQ TFSASSDGYY KKSKNQLIRS ALESNSNQTV
TISGSNSAGQ VADKLITSRT LGKRRFNKVV VKTHKPSKFS LVWTLRSAKL SRNDANSPHR
PKVLPHLFPW KRTTYCRSFK LNSVSSCSSS LSTIGWKMLL LRKRNTVYTR SINGFSIRKS
KVLSVGGSSL KWSKSIESHS RKANEEATLA VAEAERKKRE RNGTISGTGK RSYSCHKVVH
GTELRPGERI FRIGSVRYKM DSSRRSLQRM SDDESSCSAV HQSGSSSKKS YVPRRLVIGN
DEYVRIGNGN QLVRNPKKRT RVLASEKVRW SLHTARLRLV KKRKYCQFFT RFGKCNKDDG
KCPYIHDPSK IAVCTKFLKG LCTNSNCKLT HKVIPERMPD CSYFLQGLCT NENCPYRHVH
VTPNASTCEG FLRGYCADGN ECRKKHSYVC PNFEATGSCP QGSKCKLHHP KKQSKGKKRK
RSMEYKNARG RYFGIDILEP KKLRHQVVDD DDRFFGGEFS DYIHLDVSDD EAGEICRLMN
DEMAFGDNDS SELQLDDLDE LIKPIRIMSR
//
