ID A0A3M0JY14_HIRRU Unreviewed; 793 AA.
AC A0A3M0JY14;
DT 13-FEB-2019, integrated into UniProtKB/TrEMBL.
DT 13-FEB-2019, sequence version 1.
DT 02-APR-2025, entry version 16.
DE RecName: Full=Sm domain-containing protein {ECO:0000259|PROSITE:PS52002};
GN ORFNames=DUI87_17342 {ECO:0000313|EMBL:RMC05799.1};
OS Hirundo rustica rustica.
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
OC Passeriformes; Sylvioidea; Hirundinidae; Hirundo.
OX NCBI_TaxID=333673 {ECO:0000313|EMBL:RMC05799.1, ECO:0000313|Proteomes:UP000269221};
RN [1] {ECO:0000313|EMBL:RMC05799.1, ECO:0000313|Proteomes:UP000269221}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Chelidonia {ECO:0000313|EMBL:RMC05799.1};
RC TISSUE=Blood {ECO:0000313|EMBL:RMC05799.1};
RA Formenti G., Chiara M., Poveda L., Francoijs K.-J., Bonisoli-Alquati A.,
RA Canova L., Gianfranceschi L., Horner D.S., Saino N.;
RT "A high quality draft genome assembly of the barn swallow (H. rustica
RT rustica).";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the ataxin-2 family.
CC {ECO:0000256|ARBA:ARBA00007503}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RMC05799.1}.
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DR EMBL; QRBI01000121; RMC05799.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A3M0JY14; -.
DR STRING; 333673.A0A3M0JY14; -.
DR OrthoDB; 2275718at2759; -.
DR Proteomes; UP000269221; Unassembled WGS sequence.
DR GO; GO:0010494; C:cytoplasmic stress granule; IEA:TreeGrafter.
DR GO; GO:0003729; F:mRNA binding; IEA:TreeGrafter.
DR GO; GO:0034063; P:stress granule assembly; IEA:TreeGrafter.
DR InterPro; IPR045117; ATXN2-like.
DR InterPro; IPR009604; LsmAD_domain.
DR InterPro; IPR009818; PAM2_motif.
DR InterPro; IPR047575; Sm.
DR InterPro; IPR025852; SM_dom_ATX.
DR PANTHER; PTHR12854; ATAXIN 2-RELATED; 1.
DR PANTHER; PTHR12854:SF11; ATAXIN-2; 1.
DR Pfam; PF06741; LsmAD; 1.
DR Pfam; PF07145; PAM2; 1.
DR Pfam; PF14438; SM-ATX; 1.
DR SMART; SM01272; LsmAD; 1.
DR PROSITE; PS52002; SM; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000269221}.
FT DOMAIN 61..138
FT /note="Sm"
FT /evidence="ECO:0000259|PROSITE:PS52002"
FT REGION 1..51
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 254..302
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 318..612
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 774..793
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..19
FT /note="Low complexity"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 254..265
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 287..297
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 326..340
FT /note="Low complexity"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 411..434
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 445..461
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 462..471
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 478..501
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 505..530
FT /note="Low complexity"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 538..549
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 551..568
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 781..793
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 793 AA; 86006 MW; 469BAA80D19F8490 CRC64;
MSLKQAAAAA QPAGNNRKPP GGGGPGLPSA AGRQNMGRGR SSGKGPPQPT ISFDGIYANM
RMVHILTSVV GSKCEVQVKN GGIYEGVFKT YSPKCDLVVD AAHRKTAESS LGPKREDILE
SILFKSSDFV MVHFKDMDTN YARRDAFTDS AISAKVNGEH KEKDLEPWDG GENTASEELE
ALETDVSNGW DPNDMFRYNE ENYGVVSTYD SSLSSYTVPL ERDNSEEFLK REARATQLAE
EIESSAQYKA RVALENDERT EEEKYTAVQR NANEREGHGP PRMSPKAQRH PRGHRVSTGR
GTISSGLEFV SHNAPGEAST AAVARGSPSG GTWSSVVSGV PRLSPKTHRP RSPRQSSTPM
GPALPSPQPG AIPTESVAMP VPAASPTPAS PASNRAVTPS NEAKDTRLQD QRQNSATGNK
ENIKPSETSP SFSKPENKGV SPIVSEHRKQ IDDLKKFKND FRLQSSSSSD AVDQLLNKTR
EGEKSRDVVK EKTEPTPKES IIEAGSNTNS NGGSSKPNSP SISPSMSNSS EQKRGPEVTS
QGVQTSGPGS KQDKEDKEEK KDTSEQVRKS TLNPNAKEFN PRSFAQPKPS TTPTSPRPQA
QPSPSMVGHQ QPTPVYTQPV CFAPNMMYPV PVSPGVQPLY PIPMTPMPVN QAKTYRAVPN
MPQQRQDQHH QSTMMHPASA AGPPIVATPP AYSTQYVAYS PQQFPNQPLV QHVPHYQSQF
PLAHLLSSMP TLMLPCIRIL LILSLLPPQL ASSKANMLEA TLLQAPCSTT STRLPRPCTW
PTPSSSRRFT TQV
//
