ID A0A5N5PKF0_PANHP Unreviewed; 796 AA.
AC A0A5N5PKF0;
DT 26-FEB-2020, integrated into UniProtKB/TrEMBL.
DT 26-FEB-2020, sequence version 1.
DT 28-JAN-2026, entry version 20.
DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KAB5579603.1};
GN ORFNames=PHYPO_G00196880 {ECO:0000313|EMBL:KAB5579603.1};
OS Pangasianodon hypophthalmus (Striped catfish) (Helicophagus hypophthalmus).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
OC Pangasiidae; Pangasianodon.
OX NCBI_TaxID=310915 {ECO:0000313|EMBL:KAB5579603.1, ECO:0000313|Proteomes:UP000327468};
RN [1] {ECO:0000313|EMBL:KAB5579603.1, ECO:0000313|Proteomes:UP000327468}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Indonesia {ECO:0000313|EMBL:KAB5579603.1,
RC ECO:0000313|Proteomes:UP000327468};
RC TISSUE=Blood {ECO:0000313|EMBL:KAB5579603.1};
RA Wen M., Zahm M., Roques C., Cabau C., Klopp C., Donnadieu C., Jouanno E.,
RA Avarre J.-C., Campet M., Ha T.T.T., Dugue R., Lampietro C., Louis A.,
RA Herpin A., Echchiki A., Berthelot C., Parey E., Roest-Crollius H.,
RA Braasch I., Postlethwait J., Bobe J., Montfort J., Bouchez O., Begum T.,
RA Schartl M., Guiguen Y.;
RT "A chromosome-scale genome assembly of the striped catfish, Pangasianodon
RT hypophthalmus.";
RL Submitted (JUN-2019) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the SMARCD family.
CC {ECO:0000256|ARBA:ARBA00010619}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KAB5579603.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; VFJC01000005; KAB5579603.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A5N5PKF0; -.
DR Proteomes; UP000327468; Chromosome 4.
DR GO; GO:0005654; C:nucleoplasm; IEA:UniProtKB-ARBA.
DR CDD; cd17676; SWIB_BAF60C; 1.
DR CDD; cd17131; Ubl_TMUB1; 1.
DR FunFam; 1.10.245.10:FF:000001; SWI/SNF-related matrix-associated regulator of chromatin subfamily D member 3 isoform 1; 1.
DR Gene3D; 3.10.20.90; Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1; 1.
DR Gene3D; 1.10.245.10; SWIB/MDM2 domain; 1.
DR InterPro; IPR038043; SMARCD3_SWIB_dom.
DR InterPro; IPR019835; SWIB_domain.
DR InterPro; IPR036885; SWIB_MDM2_dom_sf.
DR InterPro; IPR003121; SWIB_MDM2_domain.
DR InterPro; IPR000626; Ubiquitin-like_dom.
DR InterPro; IPR029071; Ubiquitin-like_domsf.
DR PANTHER; PTHR13844; SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D; 1.
DR Pfam; PF02201; SWIB; 1.
DR Pfam; PF00240; ubiquitin; 1.
DR SMART; SM00151; SWIB; 1.
DR SMART; SM00213; UBQ; 1.
DR SUPFAM; SSF47592; SWIB/MDM2 domain; 1.
DR SUPFAM; SSF54236; Ubiquitin-like; 1.
DR PROSITE; PS51925; SWIB_MDM2; 1.
DR PROSITE; PS50053; UBIQUITIN_2; 1.
PE 3: Inferred from homology;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Phosphoprotein {ECO:0000256|ARBA:ARBA00022553};
KW Reference proteome {ECO:0000313|Proteomes:UP000327468};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 12..29
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 232..253
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 144..217
FT /note="Ubiquitin-like"
FT /evidence="ECO:0000259|PROSITE:PS50053"
FT DOMAIN 581..658
FT /note="DM2"
FT /evidence="ECO:0000259|PROSITE:PS51925"
FT REGION 35..141
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 273..311
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 324..396
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 70..91
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 92..104
FT /note="Low complexity"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 114..133
FT /note="Low complexity"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 278..287
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 299..311
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 344..362
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 796 AA; 89281 MW; 7CA5F740F480F3B5 CRC64;
MALIEGVGDE VTLLFGVVFL LLILVLAWAS THTAEPPEHL VPSSPGSVTA AEPESQEPHP
PGDITSPPRS PREDDKTEAG AERGAEGHES SAEAAGGESL LGADGLRHRD VPGPSLSTQP
PASASSTSQA STSEDVPNNT ERNMVLRLKF LNDTERIAQV NPDDTIGYIK RTYFAGQEHQ
VRLIYQGQLL QDDAQTLASL NLADNCVLHC HISQHATRAV PAGARAADQV HVALNVGSLM
VPLFVLMLSV LWLPVCSWCL LMGGFGSHMT VQTFRQDQEE EEKEEEEEKK GAPDNPSESE
EKLSETDTRP ESVFECVHLK VAAMERKRPG MTSGARMPHQ GAPMGPPGPP YGGTPPIRPG
MPNPTLDPNR KRPTTTPPVQ APSVQNRPRK KPLGFQGANE VSARPLDLRE AQSEPAIGSN
AKRRKMADKI LPQRIRELVP ESQAYMDLLA FERKLDQTIM RKRVDIQEAL KRPMKQKRKL
RLYISNTFNP AKPDSEDSEG SIASWELRVE GKLLDDPGKQ KRKFSSFFKS LVIELDKDLY
GPDNHLVEWH RTPTTQETDG FQVKRPGDVN VRCTLLLMLD YQPPQFKLDP RLARLLGIHT
QTRSCIIQAL WQYVKTNKLQ DSHEKEYISC DKYFQQIFDC PRLKFSEIPQ RLTNLLLPPD
PIVINHVISV DPNDHKKTAC YDIDVEVDDP LKTQMNGFLL STANQQEIAS LDNKIHETIE
SINQLKIQRD FMLSFSRDPK GYIQDWICSQ NRDLKLMTDV VGNPEEERRA EFYNQPWSQE
AVSRYFYCKV SGNDTR
//
