ID A0A5P9PJ93_9PSEU Unreviewed; 532 AA.
AC A0A5P9PJ93;
DT 22-APR-2020, integrated into UniProtKB/TrEMBL.
DT 22-APR-2020, sequence version 1.
DT 02-APR-2025, entry version 14.
DE SubName: Full=DNA ligase-like protein {ECO:0000313|EMBL:QFU88182.1};
GN ORFNames=YIM_14985 {ECO:0000313|EMBL:QFU88182.1};
OS Amycolatopsis sp. YIM 10.
OC Bacteria; Bacillati; Actinomycetota; Actinomycetes; Pseudonocardiales;
OC Pseudonocardiaceae; Amycolatopsis.
OX NCBI_TaxID=2653857 {ECO:0000313|EMBL:QFU88182.1, ECO:0000313|Proteomes:UP000327322};
RN [1] {ECO:0000313|EMBL:QFU88182.1, ECO:0000313|Proteomes:UP000327322}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=YIM 10 {ECO:0000313|EMBL:QFU88182.1,
RC ECO:0000313|Proteomes:UP000327322};
RA Ruckert C., Guerrero-Garzon J.F., Zehl M., Rezaei S., Selivanova G.,
RA Urban E., Busche T., Kalinowski J., Cao Y.-R., Jiang Y., Jiang C.-L.,
RA Zotchev S.B.;
RT "Complete genome sequence of Amycolatopsis sp. YIM 10, isolated from a rare
RT earth mine.";
RL Submitted (OCT-2019) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP045480; QFU88182.1; -; Genomic_DNA.
DR RefSeq; WP_153030923.1; NZ_CP045480.1.
DR AlphaFoldDB; A0A5P9PJ93; -.
DR KEGG; amyy:YIM_14985; -.
DR Proteomes; UP000327322; Chromosome.
DR GO; GO:0016874; F:ligase activity; IEA:UniProtKB-KW.
DR Gene3D; 3.90.920.10; DNA primase, PRIM domain; 1.
DR InterPro; IPR014144; LigD_PE_domain.
DR InterPro; IPR014145; LigD_pol_dom.
DR InterPro; IPR052171; NHEJ_LigD.
DR NCBIfam; TIGR02777; LigD_PE_dom; 1.
DR PANTHER; PTHR42705:SF3; ATP-DEPENDENT DNA LIGASE; 1.
DR PANTHER; PTHR42705; BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD; 1.
DR Pfam; PF13298; LigD_N; 1.
DR Pfam; PF21686; LigD_Prim-Pol; 1.
PE 4: Predicted;
KW Ligase {ECO:0000313|EMBL:QFU88182.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000327322}.
FT DOMAIN 41..148
FT /note="DNA ligase D 3'-phosphoesterase"
FT /evidence="ECO:0000259|Pfam:PF13298"
FT DOMAIN 264..519
FT /note="DNA ligase D polymerase"
FT /evidence="ECO:0000259|Pfam:PF21686"
FT REGION 1..34
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..11
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 532 AA; 60469 MW; C7B4B31EA3E3471C CRC64;
MNKRAKNDRL AKYQSMRDFT RTAEPAGDGK AQPSGNRFVV QRHRARRRHY DVRLEIDGVL
VSWAVPKGPT LDPKARRMAV HVEDHPIEYA DFEGVIPAGE YGGGDVIVWD RGTWEPVDTD
DPLKAIENGN LHFNLYGEKL HGLFVLIRPR RAESEKDQWF LLHKQDEHAQ PGWDAEDHPK
SVKTGRTNDE VAAKPDALWR SDLPAAEAEV RMGTPQWEPP TEDEMAALEE LGTKGTWELA
GRSLNLTNLD KVLVPGRDGE DPLTKRDLIR YYTLIAPTML PYLAGRPLNT HRFPNGVDKP
GFWHKEVPGH APKWLKRWHH EQAEAGDVEY YLVPDSLPAM AWLANYGAIE LHAWTSRIPD
VEHPTWALFD IDPGPETSFD DLLVLARLHR TALSHLGLEG RAKITGQRGI QVWVPVESRY
TFAETRAWTE TVSKTIGRTV PDLVSWKWTK DKRKGLARLD YTQNVINKTL VAPYSIRPQP
GAPVSVPIEW DELDDPDLTP DRWTVRTLFD RLKKVGDPFA ALLGVEQRLP KL
//
