ID A0A7C9VJ21_9BRAD Unreviewed; 277 AA.
AC A0A7C9VJ21;
DT 10-FEB-2021, integrated into UniProtKB/TrEMBL.
DT 10-FEB-2021, sequence version 1.
DT 02-APR-2025, entry version 12.
DE SubName: Full=RNA polymerase sigma factor RpoD {ECO:0000313|EMBL:NGX99528.1};
DE Flags: Fragment;
GN ORFNames=G4V63_31375 {ECO:0000313|EMBL:NGX99528.1};
OS Candidatus Afipia apatlaquensis.
OC Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
OC Hyphomicrobiales; Nitrobacteraceae; Afipia.
OX NCBI_TaxID=2712852 {ECO:0000313|EMBL:NGX99528.1, ECO:0000313|Proteomes:UP000480266};
RN [1] {ECO:0000313|EMBL:NGX99528.1, ECO:0000313|Proteomes:UP000480266}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IBT-C3 {ECO:0000313|EMBL:NGX99528.1};
RA Sanchez-Reyes A., Breton-Deval L., Mangelson H., Sanchez-Flores A.;
RT "Draft genome sequence of Candidatus Afipia apatlaquensis IBT-C3, a
RT potential strain for decolorization of textile dyes.";
RL Submitted (FEB-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:NGX99528.1}.
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DR EMBL; JAAMRR010001606; NGX99528.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A7C9VJ21; -.
DR Proteomes; UP000480266; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0016987; F:sigma factor activity; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR Gene3D; 1.10.220.120; Sigma-70 factor, region 1.1; 1.
DR InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR InterPro; IPR007127; RNA_pol_sigma_70_r1_1.
DR InterPro; IPR042189; RNA_pol_sigma_70_r1_1_sf.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR Pfam; PF03979; Sigma70_r1_1; 1.
DR Pfam; PF00140; Sigma70_r1_2; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000480266}.
FT DOMAIN 38..111
FT /note="RNA polymerase sigma factor 70 region 1.1"
FT /evidence="ECO:0000259|Pfam:PF03979"
FT DOMAIN 135..168
FT /note="RNA polymerase sigma-70 region 1.2"
FT /evidence="ECO:0000259|Pfam:PF00140"
FT REGION 1..34
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 90..134
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 249..277
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 9..28
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 90..113
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 122..134
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 277
FT /evidence="ECO:0000313|EMBL:NGX99528.1"
SQ SEQUENCE 277 AA; 29497 MW; A70A062B6DA92123 CRC64;
MAIKAKTAAI KDKDKDQKAA DTPEKDGADA PSPLLDLSDA AVKKMIKQAK KRGFVTFDQL
NEVLPSDTTS PEQIEDIMAM LSDMGINVSE SDDAADEDEE KQEEADDETD NELVEVTSKA
VTETKKSEPG ERTDDPVRMY LREMGTVELL SREGEIAIAK RIEAGREAMI AGLCESPLTF
QAIIIWRDEL NEGKIFLRDI IDLEATYAGP DAKNNMNPAM IAGPTGPDGQ PTNAVINADG
TVQVIAAAQA AAAPAAPPSP TPFRSAPAGD GAAKDPS
//
