ID A0A7J9CPE0_GOSGO Unreviewed; 268 AA.
AC A0A7J9CPE0;
DT 07-APR-2021, integrated into UniProtKB/TrEMBL.
DT 07-APR-2021, sequence version 1.
DT 18-JUN-2025, entry version 15.
DE RecName: Full=DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00012418};
DE EC=2.7.7.6 {ECO:0000256|ARBA:ARBA00012418};
GN ORFNames=Gogos_001714 {ECO:0000313|EMBL:MBA0750296.1};
OS Gossypium gossypioides (Mexican cotton) (Selera gossypioides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=34282 {ECO:0000313|EMBL:MBA0750296.1, ECO:0000313|Proteomes:UP000593579};
RN [1] {ECO:0000313|EMBL:MBA0750296.1, ECO:0000313|Proteomes:UP000593579}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=5 {ECO:0000313|EMBL:MBA0750296.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0750296.1};
RX PubMed=30476109;
RA Grover C.E., Arick M.A. 2nd, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Frelichowski J.E., Scheffler J.A., Scheffler B.E.,
RA Wendel J.F.;
RT "Insights into the evolution of the New World diploid cottons (Gossypium,
RT subgenus Houzingenia) based on genome sequencing.";
RL Genome Biol. Evol. 11:53-71(2019).
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000256|ARBA:ARBA00006835}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:MBA0750296.1}.
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DR EMBL; JABEZY010000012; MBA0750296.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A7J9CPE0; -.
DR OrthoDB; 979877at2759; -.
DR Proteomes; UP000593579; Chromosome 12.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0005739; C:mitochondrion; IEA:GOC.
DR GO; GO:0009536; C:plastid; IEA:GOC.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR FunFam; 2.40.270.10:FF:000022; -; 1.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1070.20; -; 1.
DR Gene3D; 2.40.270.10; DNA-directed RNA polymerase, subunit 2, domain 6; 1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR007646; RNA_pol_Rpb2_4.
DR InterPro; IPR007647; RNA_pol_Rpb2_5.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2; 1.
DR Pfam; PF04566; RNA_pol_Rpb2_4; 1.
DR Pfam; PF04567; RNA_pol_Rpb2_5; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000593579};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 1..60
FT /note="RNA polymerase Rpb2"
FT /evidence="ECO:0000259|Pfam:PF04566"
FT DOMAIN 82..113
FT /note="RNA polymerase Rpb2"
FT /evidence="ECO:0000259|Pfam:PF04567"
FT DOMAIN 129..254
FT /note="DNA-directed RNA polymerase subunit 2 hybrid-
FT binding"
FT /evidence="ECO:0000259|Pfam:PF00562"
SQ SEQUENCE 268 AA; 30168 MW; 4756E82F28367C7C CRC64;
MLNGLILGKH RRPQHFANAL RKLRRAGKVG EFVSVFVNEK QRCVYIASDG GRVCRPLVIA
DKGISRIKEH HMKELLDGVR TFDDFLSDGL IEYLDVNEEN NALIALYEGE ATPETTHIEI
EPFTILGVIA GLIPYPHHNQ SPRNTYQCAM GKQAMGNIAY NQASRIIQYS LCRMDTLLYL
LVYPQRPLLT TRTIELVGYD KLGAGQNATV AVISYSGYDI EDAIVMNKSS LDRGFGRCIV
MKKILRPQRT GPGSEKMQVM HLLHFLYG
//
