ID A0A7L1WFJ5_9PASS Unreviewed; 249 AA.
AC A0A7L1WFJ5;
DT 07-APR-2021, integrated into UniProtKB/TrEMBL.
DT 07-APR-2021, sequence version 1.
DT 08-OCT-2025, entry version 21.
DE SubName: Full=LN28B protein {ECO:0000313|EMBL:NXO96530.1};
DE Flags: Fragment;
GN Name=Lin28b {ECO:0000313|EMBL:NXO96530.1};
GN ORFNames=CERBRA_R05933 {ECO:0000313|EMBL:NXO96530.1};
OS Certhia brachydactyla (short-toed tree-creeper).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
OC Passeriformes; Certhiidae; Certhiinae; Certhia.
OX NCBI_TaxID=73330 {ECO:0000313|EMBL:NXO96530.1, ECO:0000313|Proteomes:UP000536092};
RN [1] {ECO:0000313|EMBL:NXO96530.1, ECO:0000313|Proteomes:UP000536092}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=B10K-DU-002-20 {ECO:0000313|EMBL:NXO96530.1};
RC TISSUE=Muscle {ECO:0000313|EMBL:NXO96530.1};
RA Zhang G.;
RT "Bird 10,000 Genomes (B10K) Project - Family phase.";
RL Submitted (SEP-2019) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus, nucleolus
CC {ECO:0000256|ARBA:ARBA00004604}.
CC -!- SIMILARITY: Belongs to the lin-28 family.
CC {ECO:0000256|ARBA:ARBA00008840}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:NXO96530.1}.
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DR EMBL; VXBV01004849; NXO96530.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A7L1WFJ5; -.
DR OrthoDB; 422005at2759; -.
DR Proteomes; UP000536092; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:TreeGrafter.
DR GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
DR GO; GO:0003729; F:mRNA binding; IEA:TreeGrafter.
DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-KW.
DR GO; GO:0031054; P:pre-miRNA processing; IEA:TreeGrafter.
DR CDD; cd04458; CSP_CDS; 1.
DR FunFam; 4.10.60.10:FF:000007; Protein lin-28 homolog A; 1.
DR FunFam; 2.40.50.140:FF:000087; Protein lin-28 homolog B; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR011129; CSD.
DR InterPro; IPR002059; CSP_DNA-bd.
DR InterPro; IPR051373; Lin-28_RNA-binding.
DR InterPro; IPR054081; Lin-28A-like_Znf-CCHC_2.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR46109; PROTEIN LIN-28; 1.
DR PANTHER; PTHR46109:SF3; PROTEIN LIN-28 HOMOLOG B; 1.
DR Pfam; PF00313; CSD; 1.
DR Pfam; PF21890; Lin-28A-like_zf-CCHC_2; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR PRINTS; PR00050; COLDSHOCK.
DR SMART; SM00357; CSP; 1.
DR SMART; SM00343; ZnF_C2HC; 2.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR PROSITE; PS51857; CSD_2; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 3: Inferred from homology;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000536092};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW RNA-mediated gene silencing {ECO:0000256|ARBA:ARBA00023158};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00047}.
FT DOMAIN 28..100
FT /note="CSD"
FT /evidence="ECO:0000259|PROSITE:PS51857"
FT DOMAIN 127..141
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT REGION 1..28
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 97..125
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 167..249
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 8..17
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 113..124
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 167..176
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 209..218
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:NXO96530.1"
FT NON_TER 249
FT /evidence="ECO:0000313|EMBL:NXO96530.1"
SQ SEQUENCE 249 AA; 27201 MW; AC09428DD87B01DE CRC64;
SSAGASKGGD EPGKLPEQEE EEESQVLHGT GHCKWFNVRM GFGFISMSNR EGSPLESPVD
VFVHQSKLYM EGFRSLKEGE PVEFTFKKSS KGLESIRVTG PGGSPCLGSE RRPKGKTVQK
RKPKGDRCYN CGGLDHHAKE CSLPPQPKKC HYCQSIMHMV ANCPHKTVSQ QPTSSQGRHE
AEPQPSTSAF LREVGGTHGF SSPSYSQEGR SEISERSGRS PQEASSSKLS ASPEEPNRKG
PSVQKRKKT
//
