ID A0A8J8Q0B9_9EURY Unreviewed; 955 AA.
AC A0A8J8Q0B9;
DT 25-MAY-2022, integrated into UniProtKB/TrEMBL.
DT 25-MAY-2022, sequence version 1.
DT 02-APR-2025, entry version 12.
DE RecName: Full=PAS domain S-box protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=CV102_24290 {ECO:0000313|EMBL:TYL36063.1};
OS Natronococcus pandeyae.
OC Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group;
OC Halobacteria; Halobacteriales; Natrialbaceae; Natronococcus.
OX NCBI_TaxID=2055836 {ECO:0000313|EMBL:TYL36063.1, ECO:0000313|Proteomes:UP000766904};
RN [1] {ECO:0000313|EMBL:TYL36063.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=LS1_42 {ECO:0000313|EMBL:TYL36063.1};
RA Kajale S.C., Sharma A.;
RL Submitted (NOV-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:TYL36063.1}.
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DR EMBL; PHNJ01000023; TYL36063.1; -; Genomic_DNA.
DR RefSeq; WP_148860566.1; NZ_PHNJ01000023.1.
DR OrthoDB; 106505at2157; -.
DR Proteomes; UP000766904; Unassembled WGS sequence.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00130; PAS; 4.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 4.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR031803; BAT_GAF/HTH-assoc.
DR InterPro; IPR052155; Biofilm_reg_signaling.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR007050; HTH_bacterioopsin.
DR InterPro; IPR001610; PAC.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR000700; PAS-assoc_C.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013656; PAS_4.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR00229; sensory_box; 4.
DR PANTHER; PTHR44757:SF2; BIOFILM ARCHITECTURE MAINTENANCE PROTEIN MBAA; 1.
DR PANTHER; PTHR44757; DIGUANYLATE CYCLASE DGCP; 1.
DR Pfam; PF15915; BAT; 1.
DR Pfam; PF13185; GAF_2; 1.
DR Pfam; PF04967; HTH_10; 1.
DR Pfam; PF00989; PAS; 1.
DR Pfam; PF08448; PAS_4; 2.
DR Pfam; PF13426; PAS_9; 1.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00086; PAC; 4.
DR SMART; SM00091; PAS; 4.
DR SUPFAM; SSF55781; GAF domain-like; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 4.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
DR PROSITE; PS50113; PAC; 4.
DR PROSITE; PS50112; PAS; 3.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000766904};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 28..99
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 106..156
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 157..203
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 237..289
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 286..332
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 357..411
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 487..542
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT COILED 530..560
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 955 AA; 106562 MW; A2D18B12D3F4A0C8 CRC64;
MTGDNDRETS HRTHVTDDVV SRSPLDLDEA TFFQTLAANT SEGLLTLDTE STIVYANPAV
ERILGYAPEE LVGTSKMKLI PERLRSAHAE GLRRYLETGE KHIDWDGVEL PALHKDGHEV
PVSISLREHE YDGQRLFTGI IRDITDQKAY EQKLQYERDT VQQLLETSPI GITVIDSNGE
IVRANAYAGV LYDRSPDELR GESYESIDQK LVNEAEEPLS SEAHPITRVF VTGESVYDTV
IGIKPTAWKR TWLSVSAAPI RGPDGSIERV ITAIEDITER KEREQRLRAF REALDHAGHA
IYLTDTDGTI EYVNAAFEEQ TGYAAEEALG ETPQILNSGE HDNAFYTDLW NTILSGETWT
GEVINQRKSG ETYTINQTIA PITTADGDIE RFIAVNVDVT DQKERERTVT RQRNTLQQLL
ETSPIGIMVV NADGELTRIN RKGRNILDIH DDRIEAYTPE DRPTYDEEGQ PVPADEHPFA
VALETGEVVE DRILRVERPD GESRWLSVSA APVFDEDGTL DRVITTAEDI TALEESKRTL
AQQRDTLEHQ RDTLERLRQI TTSLNSIHHA IMRASTRDEL EQQVCDSLGS SEAYTHAWIG
EYVAADETIR PSTWTGLTEE NLSDEVTAVN EAQYRDGITE EALQTGEVQA VQNLSNNPME
TIASDHAHRR GYNAAAAVPL RYGDTVYGVL RLHSDRAFAF DENERQLLGE LGERIGHAIY
ATKNRQLLHA ETRVELEFRS TDSDVPFIDV TERLDCRLSL KKSTPASDGA FIYYIDVKGS
LPGRVCDRLE TFAGIDFARS LQATGETGTI ECRVTTSSLV LTLIEEGVTP NSVVVEDGIG
RIIGETAPET NIRPIIEGLQ ATFPETEFIS KRTVTQSTSS ENVNAEIVFE SLTDRQQEVL
EVAYHAGYFD SPRRASGEEI AETLGISSAT FYQHIRKGSR RMLDKLTTDG SLATG
//
