ID A0AA39IY04_9AGAR Unreviewed; 976 AA.
AC A0AA39IY04;
DT 24-JAN-2024, integrated into UniProtKB/TrEMBL.
DT 24-JAN-2024, sequence version 1.
DT 28-JAN-2026, entry version 8.
DE SubName: Full=rRNA-processing arch domain-containing protein {ECO:0000313|EMBL:KAK0431667.1};
GN ORFNames=EV421DRAFT_1852849 {ECO:0000313|EMBL:KAK0431667.1};
OS Armillaria borealis.
OC Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes;
OC Agaricomycetidae; Agaricales; Marasmiineae; Physalacriaceae; Armillaria.
OX NCBI_TaxID=47425 {ECO:0000313|EMBL:KAK0431667.1, ECO:0000313|Proteomes:UP001175226};
RN [1] {ECO:0000313|EMBL:KAK0431667.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=FPL87.14 {ECO:0000313|EMBL:KAK0431667.1};
RG Lawrence Berkeley National Laboratory;
RA Ahrendt S., Sahu N., Indic B., Wong-Bajracharya J., Merenyi Z., Ke H.-M.,
RA Monk M., Kocsube S., Drula E., Lipzen A., Balint B., Henrissat B.,
RA Andreopoulos B., Martin F.M., Harder C.B., Rigling D., Ford K.L.,
RA Foster G.D., Pangilinan J., Papanicolaou A., Barry K., LaButti K.,
RA Viragh M., Koriabine M., Yan M., Riley R., Champramary S., Plett K.L.,
RA Tsai I.J., Slot J., Sipos G., Plett J., Nagy L.G., Grigoriev I.V.;
RL Submitted (JUN-2023) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the helicase family. SKI2 subfamily.
CC {ECO:0000256|ARBA:ARBA00010140}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KAK0431667.1}.
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DR EMBL; JAUEPT010000109; KAK0431667.1; -; Genomic_DNA.
DR AlphaFoldDB; A0AA39IY04; -.
DR Proteomes; UP001175226; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
DR GO; GO:0000460; P:maturation of 5.8S rRNA; IEA:TreeGrafter.
DR GO; GO:0006401; P:RNA catabolic process; IEA:InterPro.
DR CDD; cd18024; DEXHc_Mtr4-like; 1.
DR CDD; cd18795; SF2_C_Ski2; 1.
DR FunFam; 3.40.50.300:FF:000083; ATP-dependent RNA helicase DOB1; 1.
DR FunFam; 3.40.50.300:FF:000141; ATP-dependent RNA helicase DOB1; 1.
DR FunFam; 1.10.3380.30:FF:000002; superkiller viralicidic activity 2-like 2; 1.
DR Gene3D; 1.10.3380.30; -; 1.
DR Gene3D; 1.20.1500.20; -; 1.
DR Gene3D; 2.40.30.300; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR025696; Beta-barrel_MTR4.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C-like.
DR InterPro; IPR048392; MTR4-like_stalk.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR050699; RNA-DNA_Helicase.
DR InterPro; IPR016438; SKI2-like.
DR InterPro; IPR012961; Ski2/MTR4_C.
DR PANTHER; PTHR12131; ATP-DEPENDENT RNA AND DNA HELICASE; 1.
DR PANTHER; PTHR12131:SF7; EXOSOME RNA HELICASE MTR4; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF08148; DSHCT; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF21408; MTR4-like_stalk; 1.
DR Pfam; PF13234; MTR4_beta-barrel; 1.
DR PIRSF; PIRSF005198; Antiviral_helicase_SKI2; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM01142; DSHCT; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP001175226}.
FT DOMAIN 95..251
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 329..533
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 300..327
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 976 AA; 110543 MW; 3FB6F1ECA6A2AEC7 CRC64;
MNGVEEEPAG KKPRLDAPNP IVLDDFETEA KREVAASAGL QGSVEAGRLE LRHQVRHQVA
VPPGYNYTPI TKHVPPAKPD REYKFELDPF QKVSVYAIQR NESVLVSAHT SAGKTVVAEY
AIAQCLNRKQ RVIYTSPIKA LSNQKYREML AEFGDVGLMT GDVTINPTAT CLVMTTEILR
SMLYRGSEIM REVAWVVFDE IHYMRDKERG VVWEETIILL PHTVRYVFLS ATIPNAMQFA
EWICKSHDQP CHVVYTDFRP TPLQHYLFPA GGEGIYLVLN EKGEFKEDNF SKAMGQLQAN
AGEDPADPRG GKGKKGKTKK GGEKKGPSDI ARIVKKIMQG NYHPVIVFSF SKRDCEAHAL
SLTKYEFNSQ DEQDLVNNIF TNAIDNLSED DKQLPQIVTF LPLLRRGIGI HHSGLLPILK
EVIEILFQEG LIKVLFATET FSIGLNMPAK TVVFTGTRKF DGREQRSLSS GEYIQMSGRA
GRRGLDDRGV VILMCDEKLE PATAKEMIKG EADRLDSAFH VGYNMVMNLM KVEGISPEYM
LERCFFQFQS SAGIPQLENE LRKEEEAHKA FVIEDEELVA QYYEFRQQLD QMKGDFREVI
THPTYVLPFL KAGRLVKVKY KTLDFGWGVF INFEKRLPPK NRPMPKADDS ATPGGVLPCP
PHQKGQPLVV PVLLSTIEGI NLRSSESRDT LWKSVGEVHR RFPDGVPLLD PVQNMGIKDD
KFLGLVKKIE AMESQMFKSP LHDDKRLPEL YTLYSKKRDV QDRIRGLKKR IQSTHDVLQL
EELKCRKRVL RRLGFTTAED IVDVKGRVAC EISTGDELLL TELIFNGVFN TLEPEQCAAL
LSCFVFDEKS EQQTKLKEEL AAPLRIMQEI ARRIAKVSKE SKLPVDEDAY VSSFKVELMD
VVIQWCRGAS FSEICKLTDT FEGSLIRVFR RLGELLRQMA QAAKVIGNAE LQKKFEKSSE
MLERPNSVIF CSSLYL
//
