ID A3UBX0_CROAH Unreviewed; 623 AA.
AC A3UBX0;
DT 03-APR-2007, integrated into UniProtKB/TrEMBL.
DT 03-APR-2007, sequence version 1.
DT 02-APR-2025, entry version 84.
DE RecName: Full=RNA helicase {ECO:0000256|ARBA:ARBA00012552};
DE EC=3.6.4.13 {ECO:0000256|ARBA:ARBA00012552};
GN OrderedLocusNames=CA2559_08811 {ECO:0000313|EMBL:EAP86121.1};
OS Croceibacter atlanticus (strain ATCC BAA-628 / JCM 21780 / CIP 108009 / IAM
OS 15332 / KCTC 12090 / HTCC2559).
OC Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae; Croceibacter.
OX NCBI_TaxID=216432 {ECO:0000313|EMBL:EAP86121.1, ECO:0000313|Proteomes:UP000002297};
RN [1] {ECO:0000313|EMBL:EAP86121.1, ECO:0000313|Proteomes:UP000002297}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-628 / HTCC2559 / KCTC 12090
RC {ECO:0000313|Proteomes:UP000002297};
RX PubMed=20639333; DOI=10.1128/JB.00733-10;
RA Oh H.M., Kang I., Ferriera S., Giovannoni S.J., Cho J.C.;
RT "The complete genome sequence of Croceibacter atlanticus HTCC2559T.";
RL J. Bacteriol. 192:4796-4797(2010).
CC -!- SIMILARITY: Belongs to the DEAD box helicase family.
CC {ECO:0000256|RuleBase:RU000492}.
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DR EMBL; CP002046; EAP86121.1; -; Genomic_DNA.
DR AlphaFoldDB; A3UBX0; -.
DR STRING; 216432.CA2559_08811; -.
DR KEGG; cat:CA2559_08811; -.
DR eggNOG; COG0513; Bacteria.
DR HOGENOM; CLU_003041_21_1_10; -.
DR Proteomes; UP000002297; Chromosome.
DR GO; GO:0005829; C:cytosol; IEA:TreeGrafter.
DR GO; GO:0005840; C:ribosome; IEA:TreeGrafter.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003724; F:RNA helicase activity; IEA:TreeGrafter.
DR GO; GO:0033592; F:RNA strand annealing activity; IEA:TreeGrafter.
DR GO; GO:0009409; P:response to cold; IEA:TreeGrafter.
DR CDD; cd00268; DEADc; 1.
DR CDD; cd12252; RRM_DbpA; 1.
DR CDD; cd18787; SF2_C_DEAD; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR005580; DbpA/CsdA_RNA-bd_dom.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR050547; DEAD_box_RNA_helicases.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C-like.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000629; RNA-helicase_DEAD-box_CS.
DR PANTHER; PTHR47963:SF8; ATP-DEPENDENT RNA HELICASE DEAD; 1.
DR PANTHER; PTHR47963; DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL; 1.
DR Pfam; PF03880; DbpA; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00039; DEAD_ATP_HELICASE; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840, ECO:0000256|RuleBase:RU000492};
KW Helicase {ECO:0000256|ARBA:ARBA00022806, ECO:0000256|RuleBase:RU000492};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|RuleBase:RU000492};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741,
KW ECO:0000256|RuleBase:RU000492};
KW Reference proteome {ECO:0000313|Proteomes:UP000002297}.
FT DOMAIN 15..186
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 216..357
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 504..623
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 504..513
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 514..544
FT /note="Gly residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 545..554
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 564..575
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 623 AA; 69403 MW; 9DB5C00883F285EE CRC64;
MGFTEPSEVQ EKAIPILLEK DTDIVALAQT GTGKTAAFGF PLIQKIDAGY KKTQGLILSP
TRELCLQITN ELQNYSKYVK GLNPVAVYGG ASITEQAKQI KRGAQIIVAT PGRMQDMIRR
GLVDISEIQY CVLDEADEML NMGFYDDITE ILSHSPEDKF TWLFSATMPK EVARIAKDFM
NNPVEITVGS KNKGTENVSH EYYLVGGRDR YKALKRLCDA NPEIFSVIFC RTKRDTQKVA
EQLIQDGYSA GAIHGDLSQN QRDLVMRSFR TRQIQMLVAT DVAARGIDVD DITHVIHYTL
PDEPEVYTHR SGRTGRAGKS GTSMTIATKS EMRKIKAIEK RIQRNFERKD VPDGEEICQV
QLFHLASQIK DTEINHAIDK YVPQLEEELG DYTKEELIKK FFSVEFTRFH NYYSKDSISQ
VSADNRDYSE GDSDSVRYFI NVGGKDGFDW MSLKDFLKEQ LDLDRDGVYK VDVKNTFSFF
NTDADKLDKV MEVFADMTHE GRSVNVEVTK DKGGSGGGGG RRSGGGGRRS GGGGFKGKGG
GGRRSGGDRS KGSRDGGGFK GKRRSSDSDR GDSGRDRKKS SRRSSDSSSR SSSPKRERSS
EGSGSTRAEN VKSSISRRRS RRK
//
