ID D7L976_ARALL Unreviewed; 455 AA.
AC D7L976;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 02-APR-2025, entry version 67.
DE SubName: Full=Predicted protein {ECO:0000313|EMBL:EFH59421.1};
GN ORFNames=ARALYDRAFT_672815 {ECO:0000313|EMBL:EFH59421.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; GL348715; EFH59421.1; -; Genomic_DNA.
DR AlphaFoldDB; D7L976; -.
DR STRING; 81972.D7L976; -.
DR EnsemblPlants; Al_scaffold_0003_2012; Al_scaffold_0003_2012; Al_scaffold_0003_2012.
DR Gramene; Al_scaffold_0003_2012; Al_scaffold_0003_2012; Al_scaffold_0003_2012.
DR KEGG; aly:9319229; -.
DR eggNOG; KOG1855; Eukaryota.
DR HOGENOM; CLU_033595_0_0_1; -.
DR OrthoDB; 435402at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:1990904; C:ribonucleoprotein complex; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR CDD; cd08033; LARP_6; 1.
DR CDD; cd12288; RRM_La_like_plant; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR034878; La-rel_plant_RRM.
DR InterPro; IPR045180; La_dom_prot.
DR InterPro; IPR006630; La_HTH.
DR InterPro; IPR002344; Lupus_La.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR009818; PAM2_motif.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR22792:SF62; LA-RELATED PROTEIN 7; 1.
DR PANTHER; PTHR22792; LUPUS LA PROTEIN-RELATED; 1.
DR Pfam; PF05383; La; 1.
DR Pfam; PF07145; PAM2; 1.
DR Pfam; PF00076; RRM_1; 1.
DR PRINTS; PR00302; LUPUSLA.
DR SMART; SM00715; LA; 1.
DR SMART; SM00360; RRM; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS50961; HTH_LA; 1.
DR PROSITE; PS50102; RRM; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00332}; Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 138..229
FT /note="HTH La-type RNA-binding"
FT /evidence="ECO:0000259|PROSITE:PS50961"
FT DOMAIN 236..324
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 1..27
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 348..396
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 414..455
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..19
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 455 AA; 48858 MW; ABA2C67DE2C9FCF6 CRC64;
MAQMQREEVE SVTTEKKGLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PATQVSPVSG
YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG GDPTAQHQHV HDPAAAFFIS
NPAVQFPANQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP
ISYIASTKKI KALTSNHHLV SLALRSSSKL VVSEDGKKVK RTSPFTDRDR EELQGRTVVA
ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL
TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR SFGIGLGVSL GIPSLGSHES
SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL
//
