KEGG T02227: VDBG

Verticillium alfalfae: VDBG_08875

Entry

VDBG_08875        CDS       T02227

Name

(RefSeq) pre-mRNA-splicing factor cwc22

K13100

pre-mRNA-splicing factor CWC22

Organism

val Verticillium alfalfae

Brite

KEGG Orthology (KO) [BR:val00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:val03041]
    VDBG_08875
Spliceosome [BR:val03041]
Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    VDBG_08875
Complex C
   U4/U6.U5 tri-SnRNP related factors
    VDBG_08875

SSDB

Motif

Pfam:

MA3 HEAT_5MP1_2 Phage_186_Dhr

Other DBs

NCBI-GeneID:

9534470

NCBI-ProteinID:

XP_003001079

UniProt:

C9SVF0

AA seq 845 aa
MASAEVESPRDGGAKSPPPRAPRSPRRDRDRAFKRDERRPRDGGDKYRPAPRERTPPPVK
TEEEKQAIAKAEYEKLLTMRSGAHTSRPPDSGASAGPDHDKSSKEYSASFVEIAVNFMRE
VGQHLQEMQPAIALAVWDQLRNVLHEADIDKRVQYMVEVLFQVRKDSFKDNPPIKDELDL
VEEEDQITHRVDLDGEIDVQDGLNIFKYDPEWEEHEEAYQKLKAEILGEGSDYEDDDDED
DESSEEEDNEEQKAMEIKDQSNTDLVNLRRTIYLTVMSSIDPEEAVHKLLRINLPAGQEP
ELPSMIVEICSQEKNFTKFHGLIGERFAKLNRLWTGLFEDSFIDYYNKIHRYETNRLRNI
AMFFSSLLASDAIGWHVLSAIHLNEEETTSSSRIFIKILFQHLAEELGMPKLQARTKDEM
LQPSLSGIFPRDNARNIRFSINYFTSIGMGALTEDMREYLQNMPKPALPAPVADDSDSDS
VSSYSSYTGSSYSRSRSRTPPRRAIDRGRSYSRSRSPESRSGRKRSHSRGNSSSRSRSYT
RSPSPPGRRARRDDSYSRSPSPKRGRRQSSYSRSPSPPARNAPRDRSLTRSPPPARRRRN
SSSVSRSRSPAPKRAAAREPARSLSPYSRRAAGLAARPRSPPAREPARREPPRREPSRSL
SPYSRRAAGLVGRARSPPPARVPAPPPGRRRESSAGGSAPRKKPRYDSRSRSRSRGSSYD
SRSPSRSRSPSSRRARPAADSRSPSPVPPRRVAASRSPSPLPAKDSRGGRQGSYDSRSPS
PAPRRDGGSARGRSRSPGAPGGGASKRRLHSESVSRSRSPPPPKRGRRNIWLRKGLATQK
PVSKL

NT seq 2538 nt +upstreamnt +downstreamnt
atggcctcggcagaggttgaatcacctcgcgatggaggcgccaagagcccgcctcctcga
gcaccacgatcccctcggcgcgatcgcgaccgcgccttcaaacgcgacgaacgccgtccc
cgtgatggcggcgacaagtaccgacccgcgccccgagagcgcacgcctcctcccgtcaag
acggaggaggagaagcaggcgatcgccaaggccgagtacgaaaagctcctgaccatgcga
tccggcgcacatacatcccgcccgcccgactccggcgcttctgcaggcccagatcacgac
aagtcgagcaaggaatacagcgcctcatttgtggagattgccgtcaacttcatgcgagag
gtgggccaacatctacaagaaatgcagccggccattgcgttggccgtgtgggaccagctg
cggaacgtgttgcacgaggcagacatcgacaagcgtgtgcagtacatggttgaggtgctc
ttccaggtgcgcaaagacagcttcaaggacaacccacccatcaaggacgagctcgacttg
gtggaggaggaggaccagatcacgcaccgcgtcgacctcgacggcgagattgacgtccag
gacggtctgaacattttcaagtatgacccggagtgggaagagcacgaggaagcctaccag
aagctcaaagccgagatcctcggcgagggcagtgattacgaggacgatgatgacgaagac
gacgagagctccgaggaagaagacaatgaagagcagaaggccatggagattaaggaccag
tccaataccgacctcgtcaacctgcgacgaacgatctacctcacggtcatgtcgtccatc
gaccccgaagaagcggtgcacaagctgcttcggatcaatttgccggctggccaagaaccg
gaactgccatccatgattgtcgagatctgctcgcaggagaagaactttaccaagttccac
ggactcatcggcgaacgctttgcgaagctcaaccgattgtggacgggtcttttcgaagac
tccttcatcgattactacaacaagatccatcggtatgagacgaaccgtctgcgcaacatt
gccatgttcttctctagcctgctggcaagcgatgcaatcggatggcatgtactttctgcg
atccatctaaacgaagaagagacgacaagttctagccgtatcttcatcaagattctgttc
caacaccttgctgaggaactcggcatgcccaagttgcaggctcgcacaaaggatgagatg
ctgcagcccagtctgtcaggcattttcccgcgcgacaatgcccgcaacatcaggttctcc
atcaactacttcaccagtatcggcatgggtgcgctcactgaagacatgcgagagtatctc
caaaacatgcccaagccagcactcccagccccggtggccgatgactcggactcggactct
gtctcgagctactcatcctacactggctcttcgtactctcgctcgaggtcacgcacacct
cctcgccgcgccatcgaccgcggccgctcatattcgcgatcccgatcgcctgaatctcgg
agcggcaggaagcgatcgcacagccgcggcaacagctcttcccgttcgcggtcttatacg
cgctctccttctcctcccggccgccgcgcgcgtcgcgacgactcgtactcccgcagtcct
tcgcccaagcgcggacgccgccaatccagctactcccgctccccatctccacccgcgcgc
aacgcgccccgcgaccgtagcctcactcggtccccgccacctgcgcgccgcagacgcaac
agctcttctgtgagcagatcccgctctcccgcgcccaagcgggccgcagctcgcgagcca
gcccgctcactcagcccctattcgcgcagggcagctggtctcgccgctcgcccccgcagc
ccgccggctcgcgaacccgctcgtcgtgagccacctcgtcgcgagccctctcgttcgctc
agcccctattcccgccgggcagctggtctagtcggtcgggctcgaagtcccccgcccgcc
cgcgttccggccccaccaccaggccgccgacgggagagctctgcgggcggcagcgcacca
cggaagaaaccccgctacgacagccgcagccgcagtcgcagccgcggttcgtcctatgat
tcccgctcgcctagcaggagccgttcgccctcgtcccgccgcgcgcgtcccgcagcagac
agccgctcgccctcgcctgtgccgccccgacgcgtggcggctagtcgatcaccctcgccc
ctgccggctaaggattcccgtggcggtcggcagggttcctacgactcgcggtccccgtcg
cctgcgccccgtcgagacggcggctccgctcgcggcaggtcgcgatcccccggtgccccc
ggcggcggcgcgtccaagcgcaggctgcacagcgagtccgtctcccgctcgagaagcccg
ccgcccccgaaacggggacgcagaaacatctggctgcgtaaaggcctagcaacacagaag
cccgtatccaagttataa

All links

Gene (337)   
   RefGene (334)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (343)   

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