KEGG T03450: VDAG

Verticillium dahliae: VDAG_06536

Entry

VDAG_06536        CDS       T03450

Name

(RefSeq) pre-mRNA-splicing factor cwc22

K13100

pre-mRNA-splicing factor CWC22

Organism

vda Verticillium dahliae

Brite

KEGG Orthology (KO) [BR:vda00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vda03041]
    VDAG_06536
Spliceosome [BR:vda03041]
Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    VDAG_06536
Complex C
   U4/U6.U5 tri-SnRNP related factors
    VDAG_06536

SSDB

Motif

Pfam:

MA3 MIF4G HEAT_5MP1_2 Cnd1 Phage_186_Dhr

Other DBs

NCBI-GeneID:

20707999

NCBI-ProteinID:

XP_009657209

UniProt:

G2X7S8

Position

AA seq 951 aa
MASAEVESPRDGGAQSPPPRAPRSPRRDRDRDRAFKRDERRPRDGGDKYRPAPRERTPPP
VKTEEEKQAIAKAEYEKLLTMRSGGTYIPPARLRALQAQITDKSSKEYQRLMWEALKKSI
NGLINKVNYSNIKHIVPELFGENLIKGRGLFCRSMMKAQAASLPFTPVFAAMAAIVNTKL
PAVGELLVKRLIMSFRKGFKRSDKAVCVSSTTFLAHLINQQVAHEMLAGQMLLLLLHKPT
DDSVEIAVNFMREVGQHLQEMQPAIALAVWDQLRNVLHEADIDKRVQYMVEVLFQVRKDS
FKDNPPIKDELDLVEEEDQITHRVDLDGEIDVQDGLNIFKYDPEWEEHEQAYQKLKAEIL
GEGSDYEDDDDEDDESSEEEDNEEQKAMEIKDQSNTDLVNLRRTIYLTVMSSIDPEEAVH
KLLRINLPAGQEPELPSMIVEICSQEKNFTKFHGLIGERFAKLNRLWTGLFEDSFIDYYN
KIHRYETNRLRNIAMFFSSLLASDAIGWHVLSAIHLNEEETTSSSRIFIKILFQHLAEEL
GMPKLQARTKDEMLQPSLSGIFPRDNARNIRFSINYFTSIGMGALTEDMREYLQNMPKPA
LPAPVADDSDSDSVSSYSSYTGSSYSRSRSRTPPRRAIDRGRSYSRSRSPESRSGRKRSH
SRGNSSSRSRSYTRSPSPPGRRARRNDSYSRSPSPKRGRRQSSYSRSPSPAPRDRSLTRS
PPPARRRRNSSSVSRSRSPAPKRAAAREPARSLSPYSRRAAGLAARPRSPPAREPARREP
PRREPSRSLSPYSRRAAGLVGRARSPPPARVPPPPPGRRRESSAGGSAPRKKPRYDSRSR
SRSRAGAVRPRPAARVPQQTAARPRLGRPDARRIVDHPSPPPAKGSRSGRQGSYVSRSPS
PAPRRGGGGGGSARGRSRSPGVSGGAAPKRRLHSESISRSRSPPPPKRGRR

NT seq 2856 nt +upstreamnt +downstreamnt
atggcctcggcagaggttgaatcacctcgcgatggaggcgcccaaagcccgcctcctcga
gcaccacgatcccctcggcgcgatcgcgatcgcgaccgcgccttcaaacgcgacgaacgc
cgtccccgtgatggcggcgacaagtaccgacccgcgccccgagagcgcacgcctcctccc
gtcaagacggaggaggagaagcaggcgatagccaaggccgaatacgaaaaactcctgacg
atgcgatccggcggcacatacatcccgcctgcccgactccgcgctctgcaggcccagatt
accgacaagtcgagcaaggaataccagcgcctcatgtgggaggccttgaagaagtccatc
aacggcctgatcaacaaggtcaactactcgaacatcaagcacattgtccccgagctcttt
ggcgagaacctcatcaagggccgcggcctgttctgccgcagcatgatgaaggcgcaggcg
gcgtctctgcccttcacgcccgtgttcgccgccatggccgccattgtcaacaccaagctg
cctgccgtcggcgagcttctcgtcaagcgcctcatcatgtccttccgcaagggcttcaag
cgtagcgacaaggccgtctgcgtgtccagcacgaccttcctcgcgcacctcatcaaccag
caagtcgcccacgagatgctcgccggccagatgctcctgctgctgctgcacaagccgacc
gacgacagtgtggagattgccgtcaacttcatgcgcgaggtggggcaacatctccaagaa
atgcagccagctattgcgttggccgtgtgggaccagctgcggaacgtcttgcacgaggca
gacatcgacaagcgtgtgcagtacatggttgaggtgctcttccaggtgcgcaaggacagc
ttcaaggacaacccacccatcaaggacgagctcgacttggtggaggaggaggatcagatc
acgcaccgcgtcgacctcgacggcgagattgacgtccaggacggtctgaacatcttcaag
tatgacccggagtgggaagagcacgagcaagcctaccagaagctcaaagccgagatcctt
ggcgagggcagtgattacgaggacgatgatgacgaagacgatgagagctccgaggaagaa
gacaatgaagagcagaaggccatggagatcaaggaccagtccaataccgacctggtcaac
ctgcgacgaacaatctacctcacggtcatgtcgtccatcgaccccgaagaagcggtgcac
aagctgcttcggatcaatttgccggctggccaagaaccggaactgccatccatgattgtc
gaaatctgttcgcaggagaagaactttaccaagttccacgggctcattggcgaacgtttt
gcaaagctcaaccgattgtggacgggtcttttcgaagactccttcatcgactactacaac
aagattcatcgctatgagacgaaccgtctgcgcaacattgccatgttcttctcaagcctg
ctggcaagcgatgcgatcggatggcacgtactttctgcgattcatctgaacgaagaagag
acgacaagttctagccgtatcttcatcaagatcctgttccaacaccttgctgaggagctc
ggcatgccgaagttgcaggcgcgcacaaaggatgagatgctgcagcccagtctgtcaggc
atcttcccgcgcgacaatgcccgcaacatcaggttctccatcaactacttcaccagtatc
ggcatgggtgcgctcacggaagacatgcgagagtatctccaaaacatgcccaagccagca
ctcccagccccggtggccgatgactcggactcggactctgtctcgagctactcatcctac
actggctcttcgtactctcggtcgaggtcacgcacacctcctcgccgcgccatcgaccgc
ggccgctcgtactcgcgatcccgatcgcctgaatctcgaagcggcaggaagcgatcgcac
agccgcggcaacagctcttcccgttcgcgctcttatacgcgctctccttctcctcccggc
cgccgcgcacgtcgcaacgactcgtactcccgcagtccttcgcccaagcgcggacgccgc
caatccagctactcccgctccccatcccccgcgcctcgcgaccgtagcctcacgcggtcc
ccgccacctgcgcgccgcagacgcaacagctcctctgtcagcagatcccgctctcccgcc
cccaagcgggccgcagcgcgcgagcccgctcgctcactcagcccctattcgcgcagggca
gctggtctcgccgctcgcccccgcagccccccggctcgcgaacccgctcgtcgtgagcca
cctcgtcgcgagccctctcgttcgctcagcccctattcccgccgggcagccggtctagtc
ggtcgggcccgcagtcccccgcccgcccgcgtcccacccccaccaccaggccgccgaagg
gaaagctccgcgggcggcagcgcaccacggaagaaaccccgctacgacagccgcagccgc
agccgcagccgcgcaggagccgttcgccctcgccccgccgcccgcgtcccgcagcagaca
gccgctcgccctcgcctgggccgccccgacgcgcggcggatagtcgatcacccctcgccc
ccgccggccaagggttcccgcagcggtcggcagggttcgtacgtctcgcggtccccgtcg
cctgcgccccgtcgaggcggcggcggcggaggctccgctcgcggcaggtcgcgatccccc
ggtgtctccggcggcgccgccccgaagcgcagactgcacagcgagtccatctcccgctcg
agaagcccgccgcccccgaaacgaggacgcaggtaa

All links

Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (11)   

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