KEGG   Viruses: 1491970
Entry
1491970           CDS       T40000                                 
Symbol
ORF1, NoVGI_gp1
Name
(RefSeq) Norovirus GI; nonstructural polyprotein
Virus
122928  Norovirus GI
SSDB
Motif
Pfam: Peptidase_C37 Calici_PP_N RdRP_1 RNA_helicase AAA_33 Zeta_toxin NLPC_P60 AAA_18 LRAT AAA_22 SRP54 AAA AAA_5 AAA_16 Rad17 RuvB_N KTI12
Other DBs
NCBI-GeneID: 1491970
NCBI-ProteinID: NP_056820
RS: NC_001959
UniProt: Q83883
Structure
Position
NC_001959:5..5374
AA seq 1789 aa
MMMASKDVVPTAASSENANNNSSIKSRLLARLKGSGGATSPPNSIKITNQDMALGLIGQV
PAPKATSVDVPKQQRDRPPRTVAEVQQNLRWTERPQDQNVKTWDELDHTTKQQILDEHAE
WFDAGGLGPSTLPTSHERYTHENDEGHQVKWSAREGVDLGISGLTTVSGPEWNMCPLPPV
DQRSTTPATEPTIGDMIEFYEGHIYHYAIYIGQGKTVGVHSPQAAFSITRITIQPISAWW
RVCYVPQPKQRLTYDQLKELENEPWPYAAVTNNCFEFCCQVMCLEDTWLQRKLISSGRFY
HPTQDWSRDTPEFQQDSKLEMVRDAVLAAINGLVSRPFKDLLGKLKPLNVLNLLSNCDWT
FMGVVEMVVLLLELFGIFWNPPDVSNFIASLLPDFHLQGPEDLARDLVPIVLGGIGLAIG
FTRDKVSKMMKNAVDGLRAATQLGQYGLEIFSLLKKYFFGGDQTEKTLKDIESAVIDMEV
LSSTSVTQLVRDKQSARAYMAILDNEEEKARKLSVRNADPHVVSSTNALISRISMARAAL
AKAQAEMTSRMRPVVIMMCGPPGIGKTKAAEHLAKRLANEIRPGGKVGLVPREAVDHWDG
YHGEEVMLWDDYGMTKIQEDCNKLQAIADSAPLTLNCDRIENKGMQFVSDAIVITTNAPG
PAPVDFVNLGPVCRRVDFLVYCTAPEVEHTRKVSPGDTTALKDCFKPDFSHLKMELAPQG
GFDNQGNTPFGKGVMKPTTINRLLIQAVALTMERQDEFQLQGPTYDFDTDRVAAFTRMAR
ANGLGLISMASLGKKLRSVTTIEGLKNALSGYKISKCSIQWQSRVYIIESDGASVQIKED
KQALTPLQQTINTASLAITRLKAARAVAYASCFQSAITTILQMAGSALVINRAVKRMFGT
RTAAMALEGPGKEHNCRVHKAKEAGKGPIGHDDMVERFGLCETEEEESEDQIQMVPSDAV
PEGKNKGKTKKGRGRKNNYNAFSRRGLSDEEYEEYKKIREEKNGNYSIQEYLEDRQRYEE
ELAEVQAGGDGGIGETEMEIRHRVFYKSKSKKHQQEQRRQLGLVTGSDIRKRKPIDWTPP
KNEWADDDREVDYNEKINFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFF
GEPLSSIAIHQAGEFTQFRFSKKMRPDLTGMVLEEGCPEGTVCSVLIKRDSGELLPLAVR
MGAIASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGVHAAA
TKSGNTVVCAVQAGEGETALEGGDKGHYAGHEIVRYGSGPALSTKTKFWRSSPEPLPPGV
YEPAYLGGKDPRVQNGPSLQQVLRDQLKPFADPRGRMPEPGLLEAAVETVTSMLEQTMDT
PSPWSYADACQSLDKTTSSGYPHHKRKNDDWNGTTFVGELGEQAAHANNMYENAKHMKPI
YTAALKDELVKPEKIYQKVKKRLLWGADLGTVVRAARAFGPFCDAIKSHVIKLPIKVGMN
TIEDGPLIYAEHAKYKNHFDADYTAWDSTQNRQIMTESFSIMSRLTASPELAEVVAQDLL
APSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWIITLCALSEATGLSPDVVQSMSYFSF
YGDDEIVSTDIDFDPARLTQILKEYGLKPTRPDKTEGPIQVRKNVDGLVFLRRTISRDAA
GFQGRLDRASIERQIFWTRGPNHSDPSETLVPHTQRKIQLISLLGEASLHGEKFYRKISS
KVIHEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRDLLPEFVNDDGV
NT seq 5370 nt   +upstreamnt  +downstreamnt
atgatgatggcgtcaaaagacgtcgttcctactgctgctagcagtgaaaatgctaacaac
aatagtagtattaagtctcgtctattggcgagactcaagggttcaggtggggctacgtcc
ccacccaactcgataaagataaccaaccaagatatggctctggggctgattggacaggtc
ccagcgccaaaggccacatccgtcgatgtccctaaacaacagagggatagaccaccacgg
actgttgccgaagttcaacaaaatttgcgttggactgagagaccacaagaccagaatgtt
aagacgtgggatgagcttgaccacacaacaaaacaacagatacttgatgaacacgctgag
tggtttgatgccggtggcttaggtccaagtacactacccactagtcatgaacggtacaca
catgagaatgatgaaggccaccaggtaaagtggtcggctagggaaggtgtagaccttggc
atatccgggctcacgacggtgtctgggcctgagtggaatatgtgcccgctaccaccagtt
gaccaaaggagcacgacacctgcaactgagcccacaattggtgacatgatcgaattctat
gaagggcacatctatcattatgctatatacataggtcaaggcaagacggtgggtgtacac
tcccctcaagcagccttctcaataacgaggatcaccatacagcccatatcagcttggtgg
cgagtctgttatgtcccacaaccaaaacagaggctcacatacgaccaactcaaagaatta
gaaaatgaaccatggccgtatgccgcagtcacgaacaactgcttcgaattttgttgccag
gtcatgtgcttggaagatacttggttgcaaaggaagctcatctcctctggccggttttac
cacccgacccaagattggtcccgagacactccagaattccaacaagacagcaagttagag
atggttagggatgcagtgctagccgctataaatgggttggtgtcgcggccatttaaagat
cttctgggtaagctcaaacccttgaacgtgcttaacttactttcaaactgtgattggacg
ttcatgggggtcgtggagatggtggtcctccttttagaactctttggaatcttttggaac
ccacctgatgtttccaactttatagcttcactcctgccagatttccatctacagggcccc
gaggaccttgccagggatctcgtgccaatagtattgggggggatcggcttagccatagga
ttcaccagagacaaggtaagtaagatgatgaagaatgctgttgatggacttcgtgcggca
acccagctcggtcaatatggcctagaaatattctcattactaaagaagtacttcttcggt
ggtgatcaaacagagaaaaccctaaaagatattgagtcagcagttatagatatggaagta
ctatcatctacatcagtgactcagctcgtgagggacaaacagtctgcacgggcttatatg
gccatcttagataatgaagaagaaaaggcaaggaaattatctgtcaggaatgccgaccca
cacgtagtatcctctaccaatgctctcatatcccggatctcaatggctagggctgcattg
gccaaggctcaagctgaaatgaccagcaggatgcgtcctgtggtcattatgatgtgtggg
ccccctggtataggtaaaaccaaggcagcagaacatctggctaaacgcctagccaatgag
atacggcctggtggtaaggttgggctggtcccacgggaggcagtggatcattgggatgga
tatcacggagaggaagtgatgctgtgggacgactatggaatgacaaagatacaggaagac
tgtaataaactgcaagccatagccgactcagcccccctaacactcaattgtgaccgaata
gaaaacaagggaatgcaatttgtgtctgatgctatagtcatcaccaccaatgctcctggc
ccagccccagtggactttgtcaacctcgggcctgtttgccgaagggtggacttccttgtg
tattgcacggcacctgaagttgaacacacgaggaaagtcagtcctggggacacaactgca
ctgaaagactgcttcaagcccgatttctcacatctaaaaatggagttggctccccaaggg
ggctttgataaccaagggaataccccgtttggtaagggtgtgatgaagcccaccaccata
aacaggctgttaatccaggctgtagccttgacgatggagagacaggatgagttccaactc
caggggcctacgtatgactttgatactgacagagtagctgcgttcacgaggatggcccga
gccaacgggttgggtctcatatccatggcctccctaggcaaaaagctacgcagtgtcacc
actattgaaggattaaagaatgctctatcaggctataaaatatcaaaatgcagtatacaa
tggcagtcaagggtgtacattatagaatcagatggtgccagtgtacaaatcaaagaagac
aagcaagctttgacccctctgcagcagacaattaacacggcctcacttgccatcactcga
ctcaaagcagctagggctgtggcatacgcttcatgtttccagtccgccataactaccata
ctacaaatggcgggatctgcgctcgttattaatcgagcggtcaagcgtatgtttggtacc
cgtacagcagccatggcattagaaggacctgggaaagaacataattgcagggtccataag
gctaaggaagctggaaaggggcccataggtcatgatgacatggtagaaaggtttggccta
tgtgaaactgaagaggaggagagtgaggaccaaattcaaatggtaccaagtgatgccgtc
ccagaaggaaagaacaaaggcaagaccaaaaagggacgtggtcgcaaaaataactataat
gcattctctcgccgtggtctgagtgatgaagaatatgaagagtacaaaaagatcagagaa
gaaaagaatggcaattatagtatacaagaatacttggaggaccgccaacgatatgaggaa
gaattagcagaggtacaggcaggtggtgatggtggcataggagaaactgaaatggaaatc
cgtcacagggtcttctataaatccaagagtaagaaacaccaacaagagcaacggcgacaa
cttggtctagtgactggatcagacatcagaaaacgtaagcccattgactggaccccgcca
aagaatgaatgggcagatgatgacagagaggtggattataatgaaaagatcaattttgaa
gctcccccgacactatggagccgagtcacaaagtttggatcaggatggggcttttgggtc
agcccgacagtgttcatcacaaccacacatgtagtgccaactggtgtgaaagaattcttt
ggtgagcccctatctagtatagcaatccaccaagcaggtgagttcacacaattcaggttc
tcaaagaaaatgcgccctgacttgacaggtatggtccttgaagaaggttgccctgaaggg
acagtctgctcagtcctaattaaacgggattcgggtgaactacttccgctagccgtccgt
atgggggctattgcctccatgaggatacagggtcggcttgtccatggccaatcagggatg
ttactgacaggggccaatgcaaaggggatggatcttggcactataccaggagactgcggg
gcaccatacgtccacaagcgcgggaatgactgggttgtgtgtggagtccacgctgcagcc
acaaagtcaggcaacaccgtggtctgcgctgtacaggctggagagggcgaaaccgcacta
gaaggtggagacaaggggcattatgccggccacgagattgtgaggtatggaagtggccca
gcactgtcaactaaaacaaaattctggaggtcctccccagaaccactgccccccggagta
tatgagccagcatacctggggggcaaggacccccgtgtacagaatggcccatccctacaa
caggtactacgtgaccaactgaaaccctttgcggacccccgcggccgcatgcctgagcct
ggcctactggaggctgcggttgagactgtaacatccatgttagaacagacaatggatacc
ccaagcccgtggtcttacgctgatgcctgccaatctcttgacaaaactactagttcgggg
taccctcaccataaaaggaagaatgatgattggaatggcaccaccttcgttggagagctc
ggtgagcaagctgcacacgccaacaatatgtatgagaatgctaaacatatgaaacccatt
tacactgcagccttaaaagatgaactagtcaagccagaaaagatttatcaaaaagtcaag
aagcgtctactatggggcgccgatctcggaacagtggtcagggccgcccgggcttttggc
ccattttgtgacgctataaaatcacatgtcatcaaattgccaataaaagttggcatgaac
acaatagaagatggccccctcatctatgctgagcatgctaaatataagaatcattttgat
gcagattatacagcatgggactcaacacaaaatagacaaattatgacagaatccttctcc
attatgtcgcgccttacggcctcaccagaattggccgaggttgtggcccaagatttgcta
gcaccatctgagatggatgtaggtgattatgtcatcagggtcaaagaggggctgccatct
ggattcccatgtacttcccaggtgaacagcataaatcactggataattactctctgtgca
ctgtctgaggccactggtttatcacctgatgtggtgcaatccatgtcatatttctcattt
tatggtgatgatgagattgtgtcaactgacatagattttgacccagcccgcctcactcaa
attctcaaggaatatggcctcaaaccaacaaggcctgacaaaacagaaggaccaatacaa
gtgaggaaaaatgtggatggactggtcttcttgcggcgcaccatttcccgtgatgcggca
gggttccaaggcaggttagatagggcttcgattgaacgccaaatcttctggacccgcggg
cccaatcattcagatccatcagagactctagtgccacacactcaaagaaaaatacagttg
atttcacttctaggggaagcttcactccatggtgagaaattttacagaaagatttccagc
aaggtcatacatgaaatcaagactggtggattggaaatgtatgtcccaggatggcaggcc
atgttccgctggatgcgcttccatgacctcggattgtggacaggagatcgcgatcttctg
cccgaattcgtaaatgatgatggcgtctaa

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
3D Structure (31)   
   PDB (31)   
Protein domain (17)   
   Pfam (17)   
Taxonomy (1)   
   TAX (1)   
All databases (84)   

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