KEGG   Vibrio metoecus: QYQ96_02225
Entry
QYQ96_02225       CDS       T09673                                 
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
vmt  Vibrio metoecus
Brite
KEGG Orthology (KO) [BR:vmt00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vmt03009]
    QYQ96_02225 (rlmD)
Enzymes [BR:vmt01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     QYQ96_02225 (rlmD)
Ribosome biogenesis [BR:vmt03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    QYQ96_02225 (rlmD)
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 TRAM Methyltransf_25 RrnaAD TRM5-TYW2_MTfase PCMT Cons_hypoth95 Methyltransf_15 Methyltransf_11 MTS PrmA Methyltransf_4 Methyltransf_23 DOT1 Methyltransf_12 Ubie_methyltran FtsJ TPMT Ribosomal_L22 Methyltr_RsmB-F N6_N4_Mtase
Other DBs
NCBI-ProteinID: WKY93531
Position
1:453467..454789
AA seq 440 aa
MARFFQPKKHSTLDKKHQPVTIERLDHQGSGLAFLQKKPLFVEGALPGEEVLIQLTESKS
KYARGQLIKVLKPSPERVAPFCAHYAQCGGCDLQHLDRAGQINHKQQALSQLMVKFAGQS
LALSAPVCSDDQGYRRRARLSLMWDKKTQQLQFGFRRKQSKAIVNVTHCPVLEPSLNALL
PELNTLLSQWSQPELLGHVELVKGDNTPVLVLRHLGVLAEQDRQSLSDFATQKGLTLYLT
LEAGALQHVQGEPPYCEETGSCLRFLPNHFIQVNRSVNQQMVEQALNWLEVNKQDRVLDL
FCGLGNFTLPLAAQAQEVVGIEGVEEMVQHATHNAKLNQINNVAFYQANLEQDMTNASWA
QQKFAKVLLDPARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFHLEKLGM
LDMFPHTSHLESMALFVKKR
NT seq 1323 nt   +upstreamnt  +downstreamnt
atggcacgtttctttcaaccgaaaaagcacagcacgttagacaaaaagcatcaaccggtc
accattgaacggttggatcaccaaggcagtggactggcctttttgcagaagaaaccgttg
tttgtcgagggtgctttgccgggtgaagaggtgctgatccagctcaccgaaagcaaaagt
aaatatgcgcgtgggcaattgatcaaagtgctcaaacctagccctgagcgtgttgctcct
ttttgtgctcactacgcacaatgtggcggctgtgatttacagcatcttgaccgagccggt
caaattaaccacaagcagcaggcgttaagtcaattaatggtgaagtttgcagggcagagc
cttgctctatcggcaccggtttgttctgatgatcaaggctatcgccgccgagcaagatta
agcctgatgtgggataagaaaacccagcaactgcagtttggctttcgtcgtaagcagagc
aaagcgattgtcaatgtgacgcattgccctgtattagagccgagtttgaatgcgctttta
ccggaattgaacactttattgagccaatggagtcagcctgagttgcttggccatgttgaa
ttggtgaaaggtgacaacacaccagtattggtgttacgccatttgggcgtattggctgag
caagatagacagtctttatctgactttgctacgcaaaaggggctaaccttatacctaacg
ttggaagcgggcgcgttgcaacatgtgcaaggtgaaccgccttactgcgaagaaacgggt
agttgtttacgcttcttgccgaatcactttattcaggtgaaccgttcggtgaatcaacag
atggtggagcaagccctcaactggcttgaagtgaacaagcaggatcgtgtgcttgatttg
ttctgcggtttaggcaatttcactctgccgttagccgcacaagcgcaagaggtggtgggg
attgaaggcgtggaagaaatggtgcaacacgccactcataacgccaaattgaaccaaatc
aacaatgtggcgttttatcaggccaatttggaacaagatatgacgaacgcctcatgggcg
cagcagaaatttgctaaagtactgctcgaccctgcccgagcaggcgcagaagggattgtg
gatcagctcgcagcgcttggcgctgaacgagtggtgtatgtgtcgtgtaaccccgcgaca
ctggcgcgtgatagccaaagcttgctgagccaaggatttcacttagagaaactgggcatg
ctagatatgttcccgcacaccagtcatcttgagtccatggctttatttgtgaaaaaacgc
tag

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