KEGG   Vibrio metoecus: QYQ96_08925
Entry
QYQ96_08925       CDS       T09673                                 
Name
(GenBank) sigma-54 dependent transcriptional regulator
  KO
K10912  two-component system, repressor protein LuxO
Organism
vmt  Vibrio metoecus
Pathway
vmt02020  Two-component system
vmt02024  Quorum sensing
vmt05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vmt00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    QYQ96_08925
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    QYQ96_08925
   05111 Biofilm formation - Vibrio cholerae
    QYQ96_08925
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:vmt02022]
    QYQ96_08925
Two-component system [BR:vmt02022]
 Lux family
  LuxQN/CqsS-LuxU-LuxO (quorum sensing)
   QYQ96_08925
SSDB
Motif
Pfam: Sigma54_activat Sigma54_activ_2 Response_reg HTH_8 AAA_5 AAA_16 Mg_chelatase AAA AAA_2 HTH_23 AAA_19 HTH_29 AAA_22 TIP49 HTH_30 HTH_7 UBA HTH_38 PIF1
Other DBs
NCBI-ProteinID: WKY94430
Position
1:complement(1959242..1960609)
AA seq 455 aa
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESISRREPDLILLDLRLPDMTGMDVLH
AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN
DVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRG
DKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHL
PPLRERGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRHYEWPGNVRQLQNVLRNVV
VLNEGREITLDMLPPPLNQMPTPINRALPLAHENKVSVHEIFPLWMTEKQAIEQAIEACD
GNIPRAATYLDVSPSTIYRKLQAWNEKVQEKEKER
NT seq 1368 nt   +upstreamnt  +downstreamnt
atggtagaagatacagcgtcggtggcggcgttgtatcgctcttatctcaccccgctggat
attgatatcaatatcgtcggcacagggcgcgatgcaattgaaagcatcagtcgccgtgag
ccggatctgatcctgcttgatttacgtttaccggatatgacggggatggatgtcctgcat
gcagtaaaagaaaaatcaccagatgtacccattgtgttcatgacggcgcacggttcaatt
gataccgcggttgaagcgatgcgccatggtgctcaagactttttgattaagccttgtgag
gcggatcgcttgcgggtcacggtgaataacgcgatccgtaaagcatcgaaactcaaaaat
gatgtcgataataaaaatcagaactatcaaggctttatcggtagtagccaaaccatgcag
gcggtgtaccgcaccattgactctgcggcgagcagcaaagccagtatttttattaccggt
gaaagtggtacaggtaaagaggtgtgtgccgaagcgattcacgctgcgagcaagcgtgga
gataaaccgtttattgccattaactgtgctgcgatcccgaaagatctgattgaaagtgag
ttgttcggccacgtaaaaggggcttttaccggtgcggcgactgaacgccaaggtgctgcg
gaagccgctgatggtggcacgctatttttggatgagttgtgcgaaatggatttggattta
cagaccaaactgctgcgctttatccaaaccggaacattccaaaaagttggttcatcgaaa
atgaaaagcgtggatgtgcgctttgtgtgtgcgaccaaccgtgacccctggaaagaagtg
caagaagggcgttttcgtgaggacttgtactaccgcttgtatgtgatcccactgcactta
ccaccattgcgcgagcgtggtgatgatgtgatagagattgcctactcgctgcttggcttt
atgtccaaggaagaagggaaagattttgtacgcttgtcggccgaagtggtcgagcgcttc
cgtcactacgagtggccgggtaacgtgcgtcaattacaaaacgttttacgtaatgtcgtg
gtactgaatgaaggccgtgaaatcacgttagatatgctcccgccaccactaaaccaaatg
ccaactccgatcaatcgagctttaccgctcgcccatgaaaacaaagtgtcagtgcatgaa
attttcccattgtggatgacggaaaaacaggccatcgagcaagccattgaagcgtgtgat
ggtaacatcccccgcgctgcgacctatctggatgtcagtccttcaaccatttatcgcaag
ctgcaagcttggaatgaaaaagttcaagaaaaagagaaggagcggtaa

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (19)   
   Pfam (19)   
All databases (20)   

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