KEGG   Vibrio parahaemolyticus BB22OP: VPBB_0488
Entry
VPBB_0488         CDS       T02409                                 
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vpb  Vibrio parahaemolyticus BB22OP
Pathway
vpb03410  Base excision repair
vpb03430  Mismatch repair
vpb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vpb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    VPBB_0488
   03430 Mismatch repair
    VPBB_0488
   03440 Homologous recombination
    VPBB_0488
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vpb03400]
    VPBB_0488
DNA repair and recombination proteins [BR:vpb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     VPBB_0488
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     VPBB_0488
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      VPBB_0488
SSDB
Motif
Pfam: DHH RecJ_OB DHHA1
Other DBs
NCBI-ProteinID: AGB09004
Position
1:522797..524536
AA seq 579 aa
MIEIQRRPEPDLSLLPDSIPPILKRIYINRGITDIAQLETSARGLHSYQKLGGIEQAVEL
LFQAIQEQKRIIVVGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVD
QALELGAEMIMTVDNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPEVDAMVNPNLDSCA
FPSKALAGVGVAFYLMMALCVHMRKHNWFAQQGMQEPKLMELIDLVALGTVADVVPLDEN
NRILVHQGLQRIRAGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFG
VELLMCNNIHAARRMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGENSELPYGLSLFQ
RDWHQGVIGILASRIKEKFHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGL
IIKFGGHAMAAGLTIKEQDFERFSRLFDEVVKKELDEAALKGVILTDGELKPEEFSMHIA
EQLRAGGPFGQAFPEPIFDGEFKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVD
LRRWPDASVKTVRLAYKLDVNEFRGNQSLQLMIDHIEAK
NT seq 1740 nt   +upstreamnt  +downstreamnt
atgatagaaattcaacgacgtcccgaaccggatctttcccttctcccagattccattcct
ccgatcttaaaacgcatttacatcaatcgcggtattactgacatcgcgcagctagaaacc
tctgctcgtggattgcattcgtaccaaaagcttggcggcattgagcaggcggttgagtta
ttgttccaagcgattcaagagcaaaaacgcatcatcgtggtgggtgactttgacgcagat
ggcgcaacgagttctgctctttctgtattggcattgcgtatgcttggcagcaataacgtc
gattacttggtgccgaaccgctttgaggatggctacggtttgagcccagaggtggtcgat
caagcattggaacttggcgcagaaatgatcatgacggtcgacaatggcgtatcgtcgatt
gaaggtgtgcgctacgccaaagaaaatggcattaccgtattggtgacagaccaccatttg
ccaggacaagttcttccagaagtggatgcgatggtgaacccaaacctcgacagttgtgcg
tttccttctaaagcgctggctggcgttggtgtggcgttctatttgatgatggcgttgtgc
gtccacatgcgcaaacacaactggtttgctcaacaaggcatgcaagagccgaaactgatg
gagctgatcgaccttgtcgcactgggcactgttgctgatgttgtgccgcttgatgagaac
aaccgaattctggtgcatcaaggtttgcagcgcattcgtgcggggaaagcgcgcccaggt
attcaagcactgattgaagtggcgaaacgcgatgcgcgacgtttggtggcatcggacttc
ggctttgcattggggccgcgtattaatgccgctggccgtttagacgacatgtcttttggt
gttgagctgctgatgtgtaacaacatccacgccgcacgtcgcatggccagtgagcttgat
gggctcaatcagactcgtaaagagattgaagaaggcatgaagcaagaagcgatggcgttt
tgtgaacgtttgcagtttggcgaaaacagcgagctgccatacggcttatcgctgttccag
cgcgattggcaccaaggtgtgattggtattctcgcttcgcgtatcaaagagaaattccat
cgtccagtcattgcctttgctgacggtggtgaagggacgatcaagggttcttgtcgttcg
attcctggattacacatgcgtgatgcgttggacttcatcgatacgcaaaatccaggtttg
atcatcaagtttggcggtcacgcgatggcggcaggcttaaccatcaaagagcaagatttt
gagcgtttcagtcgtttattcgatgaagtggtgaaaaaagagctcgacgaagcggctcta
aaaggcgtgattcttactgatggcgagttaaaaccggaagagttttctatgcacattgcg
gagcagttgcgcgctggtgggccattcggacaagcttttcctgagccaatctttgatggt
gagtttaaggtgttgcaccaaaaattggtgggagaaaaacatcttaaactgatgttggag
cctttatacaaagggcatccgaccaatgtgatgattgatggaattgcatttaacgtcgat
ttacgccgttggcctgacgcatcggtcaaaactgtacgtttggcttacaagctggatgtg
aatgaatttcgtggtaaccaatcattgcaactgatgattgatcacatcgaagccaagtaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (5)   

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