KEGG   Vitis riparia (riverbank grape): 117923856
Entry
117923856         CDS       T07274                                 
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    117923856
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vri03400]
    117923856
DNA repair and recombination proteins [BR:vri03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     117923856
SSDB
Motif
Pfam: Tyr-DNA_phospho FHA FHA_2
Other DBs
NCBI-GeneID: 117923856
NCBI-ProteinID: XP_034698245
Position
10:complement(23455798..23466570)
AA seq 678 aa
MSLSQIGFLVPLNRNLEEDTSTPKLPISTGANVIGRNSISVSDKRLSRKHLTLIASGNGS
VDAVVEGTNPVVVASGNQRKKLRTGEKAVITNDDIIELIPGHYFFKYVTVAGEKCEKKGN
SMDAQNMESNEVSLSRKRMRQVSEDEAFARKLQAEMENDVLVQERSLVTGKSGYSQASTA
SIPSSHMNSEAIRHFSIPKDNLPLTYRLLRVKDLPAWANTSSVSIRDVIQGDVLIAVLSN
YMVDIDWLLSSCPTLTKIPHVLVIHGEGDGTLDHMKKNKPPNWILHKPPLPISFGTHHSK
AMLLVYPRGVRIIVHTANLIYVDWNNKSQGLWMQDFPWKVQKELSKGCAFENDLIDYLSV
LKWPEFTANLPALGSFNINSSFFKKFDYSNAVVRLIASVPGYHTGSNLKKWGHMKLRSVL
QECIFDKEFQKSPLAYQFSSLGSLDEKWMTELASSMSSGSCDDKTPLGLGKPLIIWPTVE
DVRCSLEGYAAGNAIPSPQKNVEKEFLKKYWAKWKATHTGRCRAMPHIKTYTRYNGQNLA
WFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLFLPSPINRGQGFSCTDNGSPSKNKCG
LSKDTKSQRTKLVTLTWEGNRSSDSSSEVIPLPVPYELPPKQYSSEDVPWSWDRRYYKKD
VCGQVWPRHVQLYSSPDS
NT seq 2037 nt   +upstreamnt  +downstreamnt
atgtctctatctcagattggattcttggttccactcaatcgcaatctagaagaagacact
tcaaccccaaaattgcccatttccactggcgccaatgtcatcggccggaatagcatctcc
gtctcagacaagaggctgagccgcaagcatctcaccttaatcgcctccggaaatggttcc
gtcgatgccgtcgtggaggggacgaacccagttgttgtggcatctgggaatcaaaggaag
aagctgcgaactggggagaaagcggtaattaccaatgatgatattatagagttgatccct
ggacattacttctttaagtatgtaacagtggctggtgagaaatgtgagaaaaaagggaat
tccatggatgcacagaatatggaatcaaatgaagtcagtctaagtcggaagcgaatgcga
caagtatctgaggacgaggcttttgcaaggaaattgcaggctgagatggaaaatgatgtc
cttgtacaggagaggtctttggtgaccggaaagtctggctactcgcaggctagtacagca
agtattccatcttcccacatgaactcagaggccattcgtcattttagtattcctaaagat
aatttacctttaacctatcggcttttgcgagtgaaagatctgcctgcatgggcaaataca
tcttctgtttctataagggatgtaattcagggggatgtgctcattgctgttctttcaaac
tacatggtggacatcgattggttgttatcttcttgtccaacacttactaaaatccctcat
gtgttggttattcatggagagggtgatggtactctggatcacatgaagaagaacaaacct
ccgaattggattctgcacaaaccgccactaccaatttcatttggaacgcaccattcgaag
gccatgcttcttgtctatcctcggggagtgagaattattgtacatacagcaaatttaata
tatgttgactggaacaacaaaagccaaggtttatggatgcaagatttcccttggaaggtc
caaaaagaactgagtaaaggatgtgcatttgaaaatgatctgattgattatctgagtgta
ttgaagtggccagaattcaccgctaatttaccagctcttggcagcttcaatatcaattca
tcctttttcaagaaattcgattacagcaatgcagtggtcagactaattgcatctgtccct
ggttatcacacgggttccaatctgaaaaagtggggacatatgaagctccgcagtgttcta
caggagtgtatttttgacaaagagtttcagaaatctccccttgcttatcagttctcttcc
cttggttctttggatgagaagtggatgactgaactagcatcctcaatgtcatcaggttcc
tgtgatgataaaacacctcttggtttaggcaaacccctgataatatggcctaccgtggaa
gatgtcagatgctctttggagggttatgcagctggaaatgcaattccaagtccacaaaaa
aatgtggagaaagaattcttgaagaagtattgggcaaaatggaaggcaacccacactggt
cgctgtcgtgcaatgcctcatataaagacatacacccgttataatggtcaaaaccttgct
tggttcttgttaacttcagcaaatctcagcaaagcagcctggggagcactccagaagaac
aattcccaattgatgatccgttcatatgagctgggagtactatttttaccatctcccatc
aaccgtggtcagggattctcttgtacagacaatggtagtccatcaaagaataaatgtggc
ttgtcaaaagacacaaaatcgcagagaacgaaactggtgactctgacctgggaaggaaac
agaagttcagattcatcttctgaagtaattccattgcctgtgccatacgaactccctcca
aagcagtactcctctgaagatgttccctggtcttgggacaggcgatactacaagaaggat
gtttgtggtcaagtttggccgagacacgttcagctgtacagttccccagattcctaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (9)   

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