KEGG   Alloyangia pacifica: CEW88_08160
Entry
CEW88_08160       CDS       T05431                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
ypac  Alloyangia pacifica
Pathway
ypac02024  Quorum sensing
ypac03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ypac00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CEW88_08160
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CEW88_08160
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ypac03019]
    CEW88_08160
   03036 Chromosome and associated proteins [BR:ypac03036]
    CEW88_08160
Messenger RNA biogenesis [BR:ypac03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CEW88_08160
Chromosome and associated proteins [BR:ypac03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CEW88_08160
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: AWI83653
UniProt: A0A1I6P8C9
Position
1:complement(1704129..1704368)
AA seq 79 aa
MASDRQNLQDAFLNHVRKTKVPVTVFLINGVKLQGVITWFDNFCVLLRRDGQSQLVYKHA
ISTIMPSQPINLYDGDDTA
NT seq 240 nt   +upstreamnt  +downstreamnt
atggcttcagacagacaaaatctacaggacgcatttcttaaccatgttcggaaaaccaag
gttccggttacggttttcctgatcaacggtgtaaaattgcagggtgtcatcacctggttc
gacaatttttgcgttctcctccgccgcgacggtcagtcgcagctcgtgtacaaacacgcg
atctcgaccatcatgccgtcgcagccgatcaacctttatgacggcgacgataccgcttga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (6)   

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