KEGG   Yersinia pestis Pestoides F (biovar Antiqua): YPDSF_3594
Entry
YPDSF_3594        CDS       T00505                                 
Name
(GenBank) RNAse R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
ypp  Yersinia pestis Pestoides F (biovar Antiqua)
Pathway
ypp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ypp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    YPDSF_3594
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ypp03019]
    YPDSF_3594
   03016 Transfer RNA biogenesis [BR:ypp03016]
    YPDSF_3594
Enzymes [BR:ypp01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     YPDSF_3594
Messenger RNA biogenesis [BR:ypp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     YPDSF_3594
Transfer RNA biogenesis [BR:ypp03016]
 Prokaryotic type
  tRNA degradation factors
   YPDSF_3594
SSDB
Motif
Pfam: RNB CSD2 OB_RNB HTH_12 S1 Rho_RNA_bind HTH_20 LexA_DNA_bind OB_Dis3
Other DBs
NCBI-ProteinID: ABP41944
Position
complement(4127347..4129872)
AA seq 841 aa
MSQDPFLEREAEKYESPIPSREFILAHLAKRETPASREELANELNLTGEEPLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGTVIGHRDGYGFLRVEGSKDDLYLSAEQMKMAIH
GDVVLAQVVGADRKGRREARIVRVLVPKTSQIVGRYFTDAGTGFVVPDDSRLSFDILIPA
EATCGARMGFVVVVELTQRPTRRTKAVGKIVEVLGENMGTSMAVDIALRTHEIPHTWPPQ
VEKQVADLKEQVPEEAKKGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPQTALDDEARSRGNSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SQGKLSSYKFYEAVMSSHARLTYTKVWRIIDGEESLREQYKPLVPHLEELHAMYKVLDQA
RAERGGIAFETEEAKFIFNAERRIERIEPTVRNDAHKLIEECMILANIAAARFVEKHEEP
ALFRVHDRPSDDHIVALRSVLNELGLTLGGGLKPQPKDYSVLMDEISDRPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALASYGHFTSPIRRYPDLAMHRAIKYQLAKEHGNLKDRWTPT
GGWHSDFEDMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFTGIIASVTGFGF
FVRLDDLFIDGLVHVSSLDNDYYRYDNIGQRLIGESSGVVYRLGDTVEIRVDAVHMDERK
IDFALVSSTRKPRGEGKTARDKAKNNGQRTLRSNSAGRGSSSGSSRRDGAPTAGGQKRPR
RAKKPVNFEPDSAFRPDAAAAKPDDKALAEKKAKAKAKRASAKTKKNCCGDQSQASKEKN
H
NT seq 2526 nt   +upstreamnt  +downstreamnt
atgtcacaagatccattcctggaacgagaagcagagaaatatgagtcaccaatccctagc
cgggaatttattttggctcatctcgcgaagcgcgagacacctgccagccgtgaagagctg
gccaatgaacttaatttaaccggtgaagagcctttagaggcgctacgccgtcgtttgcgt
gcgatggaacgtgatgggcaattggtcttcacccgtcgtcagtgctacgccttgccagag
cgtctggatttactgcgcggtacggttattggtcaccgtgatggctatggctttttgcgg
gttgaaggcagtaaagatgatctgtatctctccgcagagcagatgaaaatggcgatccat
ggtgatgtcgtcttggcacaagtggtcggggctgatcgtaaaggccgccgtgaagcgcgt
atcgtgcgtgtattggtcccaaaaaccagccagatcgtgggtcgctactttaccgatgca
ggtacgggctttgtcgtgccggatgacagtcgtcttagctttgatatcttgatcccagca
gaggcgacctgtggtgcgcggatgggctttgtggtcgtagtcgaattgactcagcggcca
actcgccgtactaaagcggttggtaagattgttgaagtacttggcgagaatatgggcacc
agcatggcggtggatatcgcattgcggacccatgagatcccgcacacctggccgcctcaa
gttgaaaaacaagtcgcagatctgaaagaacaggtaccggaagaagcgaaaaaggggcgg
gtagatttgcgcgatctgcctctggttacgattgatggtgaagatgcccgcgacttcgat
gatgccgtgtattgcgagaagaaacgtggcggcggttggcggttgtgggtagcgattgcg
gatgtcagttattatgtgcgtcctcaaaccgcattggatgacgaagcccggagccgtggt
aactcggtctacttcccatcgcaagtgataccgatgctgccggaagtgctatcaaacggc
ctttgctcccttaatccacaggtagaccgcctgtgtatggtgtgcgagatgaccatctct
tcgcagggcaaactctcgtcttataagttctacgaagcggtaatgagctcccatgctcgt
ctgacctacactaaggtgtggcggattatagatggtgaggaatcgctgcgtgagcaatat
aagccgctggtgccacatctggaagagctgcacgcgatgtataaagtgctggatcaggcg
cgcgcagagcggggagggattgctttcgaaacagaagaagccaagtttatctttaatgct
gaacggcgcattgaacgtatcgaacccacggtacgtaatgatgcccataagctaattgaa
gagtgcatgattctggcgaatatcgcggcggcgcgttttgtggaaaaacacgaagaaccg
gcgttgttccgagtgcatgatcgcccaagcgatgaccatattgtggcattgcgcagtgtg
ttgaatgagttggggctaacactcgggggcgggctgaagccgcaaccaaaagattattca
gtgttgatggatgaaatttctgatcgccccgatcatgaaatgctgcaaaccatgttgcta
cgctccatgaaacaagcggtttatgatccagaaaaccggggtcactttggtttggcgctg
gcttcttatggccacttcacctcacctattcgtcgttaccctgatttagcgatgcatcgg
gctattaagtatcagttagccaaagagcacggtaatttaaaagatcgctggacacctacg
ggcggctggcacagcgatttcgaagatatgctgcaattgggccaacactgttcgatgacc
gagcgccgagcggatgaagcaacccgcgatgtcgctgactggctgaagtgtgacttcatg
ctagatcaggtcggtaatgtcttcaccggtattattgccagtgtgaccggttttggcttc
ttcgtgcgtctggatgacctctttatcgatggtctggtgcatgtctccagcctggataac
gattactaccgttacgacaacattggtcagcgtctgatcggtgaatcttccggtgtagtt
tatcggctgggtgataccgtggagattcgagtcgatgcggttcatatggatgagcgtaaa
attgactttgctctggtctccagtacccgcaagccacgtggtgaaggcaagaccgcccgt
gataaggcgaaaaataacggccagcgtacattacgcagtaattctgcaggtcgtggctct
tcatccggctcatcgcgccgtgatggtgcgccaactgcgggtggacaaaaacgcccacgt
cgggcgaaaaaaccggtaaacttcgagccggacagtgcgttccgtccagatgctgccgcg
gctaagccagacgataaagccttagctgagaagaaagccaaggcgaaggcaaaaagagcc
tcggctaagaccaaaaaaaattgctgcggcgaccaaagccaagcgagcaaagaaaaaaac
cactag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (11)   

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