KEGG   Yoonia rhodophyticola: AABB31_14160
Entry
AABB31_14160      CDS       T10513                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
yrh  Yoonia rhodophyticola
Pathway
yrh03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:yrh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AABB31_14160 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:yrh03400]
    AABB31_14160 (mfd)
Enzymes [BR:yrh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AABB31_14160 (mfd)
DNA repair and recombination proteins [BR:yrh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      AABB31_14160 (mfd)
SSDB
Motif
Pfam: TRCF DEAD CarD_TRCF_RID UvrB_inter Helicase_C ResIII MFD_D3 AAA_16 Cas3-like_C_2 UB2H SecA_DEAD AAA_30 RecG_dom3_C
Other DBs
NCBI-ProteinID: WZU66209
UniProt: A0AAN0NL22
Position
complement(711938..715387)
AA seq 1149 aa
MSDPKHITVCGAPEGFDARLILDEVAKSGPVLHVARDDKRLAAMQAALAFFAPDMPVFVF
PAWDCLPYDRVSPNADISATRMATLAALVHDMPARFVLLTSLAAATQRVPPRAVLREAAF
KASVGSRLDEAALRAFLVRMGFTQSPTVMEPGDYAVRGGIIDIFPPGQSGPVRLDLFGDV
LDGARRFDPATQRTTEKLTDVELAPVSEVILDEAAITRFRQNYRIEFGAAGTDDPLYEAI
SAGRKHAGVEHWLGFFEENLETLFDYLPDVTVTLDDQTASARVSRWDSIADQYGTRMHAL
SQKGRMDSVYKPAPPALLYLDDDAWTGAVAGHRVLQFSPLKQATGPGVIDAGGRIGRNFA
PERQQENISLFKSLSDHVKVRLDAGPVVIASYSEGARERLEGLIADEGISEAIRVKDFSR
VDKRGVHLAVWPLDHGFEAPGLTVISEQDVLGDRLIRQTKRKRRAENFLSEANSLSPGDL
VVHVDHGVGRFQGMEVVTALGAAHECLLLEYAESSKLYLPVENIELLSKYGHETGLLDKL
GGGAWQAKKAKLKERIRQIAERLIRVAAERELRTAPALDPPDGLWDQFLARFPYVETDDQ
LAAIEDVLDDIAAGKPMDRLICGDVGFGKTEVAIRAAFVAALSGVQVAIIAPTTLLARQH
YQNFAERFRGFPVNVAPLSRFVSAGDAAKTRDGITKGTVDIVVGTHALLAKGIRFKNLGL
LVIDEEQKFGVQHKERLKQLRTDVHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPIDRLA
IRTYVSEFDTITIREALLREHYRGGQSFLVVPRISDMAEMENFLKREVPEVTYISATGQM
AAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIVWRADMFGLSQLYQIRGRVGR
SKTRAYAYLTTKPRQKLTDTAQKRLRVLGSIDTLGAGFTLASQDLDIRGAGNLLGEEQSG
QMREVGYELYQQMLEEQISAIKSGAAEGIIDDGQWAPQINLGVPVLIPEDYVPDLDVRLG
LYRRLSELTTKVELEGFAAELIDRFGKLPKEVNTLMLVVRIKAMCKRAGIAKLDAGPKGA
TIMFHNDKFASPEGLVAFVHDQNGMAKVKDNKIIVRRDWAKERDKIQGAFNIARDLAQKL
ADKKKQAKA
NT seq 3450 nt   +upstreamnt  +downstreamnt
atgtctgatcccaaacacattacggtctgcggcgcgccggaaggtttcgacgcgcgactg
atccttgacgaggtcgcaaaatccggaccggtcctgcatgtggcccgcgatgacaagcgt
ctggccgcgatgcaagccgcattggcgttctttgccccggatatgcctgtctttgtgttt
ccggcctgggattgcctgccatatgaccgggtgtcgcccaatgccgatatctcggccacg
cgcatggcgacactggccgcgcttgtccacgatatgcccgcgcggtttgttctgctcacc
tcgctggcggcggccacgcaacgtgtgccgccacgcgcggtgctgcgcgaggctgcattc
aaggccagcgtcggcagccggctggatgaggccgcattgcgcgcgtttctggtgcggatg
gggttcacgcaaagccccactgtgatggaacccggcgattacgcggtgcgcggcgggatc
attgatatctttccgcctggccaatcgggacctgtccgccttgatctgtttggcgatgtg
ctggatggcgcccgccggtttgatccggcgacccagcggaccaccgaaaaactgacggat
gtggaactggcccctgtatccgaggtcattctggatgaggccgccatcacccggtttcgg
cagaactaccggatcgagtttggggccgctggcacggatgatccgctttacgaggcgata
agcgcgggccgcaaacatgccggtgtcgaacattggctgggatttttcgaggaaaatctg
gaaacactgtttgattacctgcccgatgtgaccgtcacattggatgatcagaccgcgtca
gcgcgggtgtcccgctgggacagtatcgccgatcaatacggaacccgcatgcacgccctg
tcgcagaaggggcggatggacagcgtctataagccagcgccgcccgcattgctgtatctt
gacgacgacgcctggacgggcgctgtcgcgggtcaccgcgtgctgcaattctcgcccctg
aaacaggcaacaggccccggtgtcattgatgcaggcgggcggatcggccggaactttgca
cctgaacgacaacaggaaaacataagccttttcaaatcactgtcagatcatgtgaaggtc
aggctagacgctggccccgtagtcattgcgtcttattccgaaggggcgcgcgagcgtctt
gaagggttgattgcggatgagggtatcagcgaagccattcgggtgaaggatttcagccgc
gtggataaacgcggggtgcatctggcggtctggccgctggatcacgggttcgaggcgccg
ggtctgaccgtcatttcggaacaggatgtgctaggcgaccgcctgatccgccagaccaag
cgcaaacgccgggcagagaactttctgtccgaggcgaacagcctgtcaccgggcgatctt
gtggtgcatgtggatcacggggttggccgctttcagggcatggaagttgtgacagccctt
ggggcggcgcatgaatgcctgctgctggaatatgccgaaagctccaaactgtatctgccg
gtcgagaatatcgaactgctttcgaaatatgggcatgagacgggtttgctggacaagctc
ggtggcggcgcctggcaggccaagaaggccaagctgaaagaacggatcaggcagattgcc
gaacggttgatccgcgtcgcagcagagcgtgagttgcgcacggccccggcgctggacccg
cctgacggcttgtgggatcagtttctggcccgctttccctatgtggaaaccgacgatcag
ctggccgcgattgaggatgtgctggacgacatcgccgccggcaagccgatggatcggttg
atttgcggcgatgtgggctttggcaaaacagaagtggccatcagggcggcttttgttgcg
gccttgtcaggtgtgcaggttgccattatcgcgcccacaacgttgctggcccgccagcat
tatcagaactttgccgaacggttccggggctttcccgtgaatgtggcacccttgtcccgg
tttgtcagtgcaggcgatgccgccaagacccgtgatggcatcaccaagggcacggtcgac
atcgtggtgggaacccatgcgcttttggcgaaggggatcaggttcaagaaccttggcctg
ctcgtcattgatgaggaacaaaaattcggggtgcagcataaggagcggctaaagcagttg
cgcaccgatgtgcatgtgctgaccctgacggcaaccccgattccacggacgctgcagctg
tcattgtcgggcgtgcgtgatctgtcgatcatcggcaccccgcccatcgaccggttggcg
atccgcacttatgtcagcgagttcgacacaatcaccatccgcgaggcgctgttgcgcgaa
cattatcgcggcgggcaatccttccttgttgttccgcggatttccgacatggcggaaatg
gagaatttcctgaaacgtgaagtgcccgaggtgacgtatatctcggccaccgggcagatg
gcggcgggcgagctggatgaccgcatgaacgcgttttacgacggtaaatatgatgtgctg
ctggccacgacgattgttgaatcgggcctcgatattccgaccgcgaacacgatgattgtc
tggcgggctgatatgtttggcctgtcacagctctatcagatcaggggcagggtgggtcga
tccaagacccgtgcctatgcctatctgacgacgaaaccgcgccagaaactgacggatacg
gcccagaaacggctgcgtgtgctggggtccattgacacgctgggggccgggttcacgctg
gcgtcgcaggatctggatattcgcggagcaggtaacctgctgggcgaagaacagtccggg
cagatgcgcgaggttggttacgaactttatcagcagatgctggaagaacagatatcagcc
atcaaatccggtgcggccgagggcattatcgacgacggtcaatgggcgccgcagatcaac
ctgggtgtgccggttctgatcccggaagactacgtgcctgatctggatgtccgccttggg
ctgtaccgccgcctgtcagagctgacgacgaaggtcgaactggaaggctttgcggctgaa
ttgattgatcggtttggcaaattgcccaaagaggtcaatacgttgatgttggtcgtgcgc
atcaaggcgatgtgcaaacgggccgggattgccaagctggatgcgggacccaaaggggcc
acgatcatgttccacaacgacaaattcgcctcccccgaggggttggtcgcattcgtgcat
gaccaaaacgggatggccaaggtcaaggataacaagatcatcgtgcgccgcgattgggcc
aaggaacgcgacaagatccagggcgctttcaacatcgcccgcgatctggcgcaaaagctt
gccgacaaaaagaaacaagcaaaagcctag

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