KEGG   Zygotorulaspora mrakii: HG535_0A04200
Entry
HG535_0A04200     CDS       T06976                                 
Name
(RefSeq) uncharacterized protein
  KO
K14401  cleavage and polyadenylation specificity factor subunit 1
Organism
zmk  Zygotorulaspora mrakii
Pathway
zmk03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:zmk00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    HG535_0A04200
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zmk03021]
    HG535_0A04200
   03019 Messenger RNA biogenesis [BR:zmk03019]
    HG535_0A04200
Transcription machinery [BR:zmk03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     HG535_0A04200
Messenger RNA biogenesis [BR:zmk03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     HG535_0A04200
SSDB
Motif
Pfam: CPSF_A Beta-prop_RSE1_1st Beta-prop_RSE1_2nd
Other DBs
NCBI-GeneID: 59234116
NCBI-ProteinID: XP_037142208
UniProt: A0A7H9AVT4
Position
1:complement(836070..840038)
AA seq 1322 aa
MNIYDDVLDATVVSQSVTGHFTTREYEELLAVRTNILCIYRYTDEGKLFLTKEFRFHGKI
TDIGLVPLPNSNLDCLLLGTTTAKLSIVRYDDALGSIETLSLHFYEDKFKDISLFEMAKE
SQLRIDPGKNCIMLFNNDAIAILPFRTSNADEDEDEDDDDYDEIRKPKKAKTNKDRITEA
SSIFLAKELHKEIQNVIDIQFLAGFTNPAVAVLYEPKLGWAGNSKLVPHPVSYIILTLEM
VLNELNTNVDGTVIGKVEELNWDFHTLIPISNGCIIAGTNELAYVDNTGVLQSMILLNSY
SNTEFKKGRIIDKTKSEILFNKPIRFSWSLSDKDNNVNQILLLIDHQTNFYYVQLESEGR
LLTKFDIFKLPIVNETLKWNTNCTCISPLRDLSDGQTMVLFMGFLSGDSQVVKLNNVKSA
VETRDEHKPFLETVDDDDDDLYADENSISEDNKEVVVETVQPFDIEILSSLRNIGPITSL
TTGKVCSVEKWVKGLANPNKDEFSVVGTSGNGSGSHLTEIQESVRPEVELALKFISITQI
WTLKIKGVDKYLVTTDSNTKKSDIYRIADNFAIHKEGRFRKDDTTVYISMFGEKRIVQVT
SSNLYLYDSNFRRLTTMKFDYEVVHVSVMDAYILITVSRGDIKIYELDSKHKKKLSKVEL
PEVLKEMVITSGVILKSNMCNEFLTYLQDCEEEQLLFTFVTADNQIIFFGKEHNDRIFQF
NGVDQLNEMLYISTYQLPEEVIPDPSIKQVMINKLGHNNREEYLTILTFGGEIYQYKKSA
SRHSRFHKNANANDIKITGAPDNAYAKGVSSIERIMHYVPEYNDFSVIFVTGSVPYVIIK
EDDSNPKIFKFANIPLVSMTRWGKKSVMCVDDIKNARVYTLDCHDIYYGNRLPIKRIRIS
DVLEDYETLTNVTYHEKTELFIVSYAKRIDYDALGEDGERLLGYQENAPHASGFQAGILL
VNPKTWNVIDKKEFGANTIINDARTMLIQLDSKTRRKREYLVLGVAIVGTEDLPPSGSFA
VYDITEVVPEPGKPDTNFKLSEIFHEEVRGSVSTVCEISGRFLINQSQKVLVRDVQEDNS
VVPVAFLDIPVFVSDAKSFGNLLIIGDAMHGFQFVGFDAEPYRMIPLGRSITKLETVSIE
FLVNGGEIYFAVTDTDCILHVFKYSPDEPNSLSGQRLIHCTSFNLHSSNTALCLIPKSEA
FPATAKNPSTFQVVGAQTDGSIFKILPLKEDAYRRLYVVQQQFNEKDIQFGGLNPRMERL
SNVHYIHTHVLRPMLDNNIIKKFSMVCIDRRKQIAQRAGRRAYLEIWRDLIDIEFSLRSL
CE
NT seq 3969 nt   +upstreamnt  +downstreamnt
atgaacatttatgatgatgttcttgatgctacggttgtctcacaatctgtaacaggtcat
tttaccacgagagaatatgaagaactgttggcagtgagaaccaatatattatgcatttat
aggtacactgatgagggaaaactgtttctcacaaaggaattccggtttcatggcaagatc
accgacataggactcgttccgctgccgaactccaatttggactgcctactattgggcact
acaacagcaaagctatcgattgtacgatatgatgatgcattgggcagcatcgaaactttg
agtttacatttctatgaggataagttcaaggatatttctttgtttgaaatggccaaggag
tctcagctaagaattgatccaggtaaaaattgtattatgcttttcaacaatgacgccatt
gctatacttccctttaggacaagtaatgcggatgaggatgaggatgaggatgatgatgat
tacgacgaaattcgcaaaccaaagaaagcaaaaaccaataaagaccgaattacagaagcc
agctcaatatttttggccaaagaactgcataaagagattcagaacgtcatagatattcaa
tttttggcagggttcaccaatccagccgtggcggtattgtatgaaccaaagttgggttgg
gcaggtaatagtaagctggttccacaccctgtgagttacattattctaacattggagatg
gtgctcaacgagctaaacacgaatgttgatggcacagtaatcggcaaagttgaggaatta
aattgggattttcatactctgattccaatttctaatggctgcatcatagctggaactaac
gaactcgcgtacgttgacaatacaggtgtcctacaatcaatgatactattgaattcatat
tcaaataccgaatttaaaaagggaagaataattgataaaactaaatcggaaattctattt
aacaaacccatcagattcagctggtcgctttcagataaagacaacaatgtaaatcaaata
cttcttttgattgatcatcaaactaatttttattatgttcagttggaatcagaaggcagg
ttgttaacaaagttcgacatattcaaactaccaattgttaacgaaactctaaagtggaat
acaaattgtacatgcatttcacctctacgggatttatcagatggccaaacaatggtatta
tttatgggatttctgtccggtgactcgcaagttgtgaaactgaataacgtgaaatctgct
gtagaaacgagggatgaacacaaaccatttctggagacagtcgatgatgatgatgatgat
ttatatgcagatgaaaactccattagtgaggataacaaagaggtggtcgtagaaacagtt
caacctttcgacattgaaatattgtcttcgctccgaaatattggaccaataacctcattg
actacagggaaagtttgttcggttgaaaaatgggtgaaaggtctcgccaatcctaataaa
gatgaattttctgtggtgggaacttctggaaacggaagtggatctcatttaacggaaatt
caggaaagtgttcgacccgaagttgagttggcattaaaatttattagcattacgcaaatt
tggactttaaagattaagggagttgacaaatacttggttaccacggattcaaacaccaaa
aaaagtgatatctataggattgccgataattttgcaatacataaggaagggagattcagg
aaggatgacactaccgtgtacatatctatgttcggtgaaaaaagaattgttcaagtaaca
tcaagcaatctatacctttatgattcgaactttagaagacttacgactatgaagttcgac
tacgaagttgttcatgtatctgtaatggatgcatatatactaataacagtgtctagaggt
gacattaagatttatgagctagactcaaaacataaaaagaaactcagcaaagttgaatta
cctgaagtgctgaaagaaatggttataacatctggtgtaatactaaaaagtaatatgtgc
aacgaatttttgacgtatttacaagattgtgaggaggaacagttgctatttacgtttgta
acagcagacaaccaaataattttttttggtaaggagcataacgaccgcatatttcagttc
aatggagtcgatcaattaaacgaaatgctttatataagcacttatcagttgcctgaagaa
gttatacctgatccatcaatcaaacaagtgatgattaacaaattaggacataacaataga
gaggagtacttgacaattctaacttttggaggtgaaatatatcagtacaaaaaatctgca
tccagacatagtagatttcataaaaatgcaaacgcgaatgacattaagataacaggggct
ccagataatgcatatgctaaaggtgtgagctccatcgaaagaataatgcactatgttcca
gaatataatgacttttccgtcatatttgtcacgggaagtgttccatatgttattatcaaa
gaagatgattcaaatcctaagatttttaagtttgctaatataccattagtttccatgacg
agatggggcaaaaagtcagtaatgtgtgttgatgatatcaaaaatgcccgcgtgtacact
ttagattgtcacgatatttactatggaaacagactacctataaaaagaatccgtataagt
gatgtattagaagattatgaaacactcacgaatgtgacctaccacgaaaaaacggaatta
tttattgtttcatacgccaaacgtattgattatgatgcactaggcgaagatggcgagagg
ttacttggctatcaggagaatgcaccacatgccagtgggtttcaagccggtatactttta
gtaaaccccaaaacatggaatgttattgataaaaaggaatttggtgcaaatacaataata
aatgatgcaagaacaatgttgatacagttagactcgaaaaccagacggaaacgagaatat
cttgttttaggtgttgccattgttggaacagaagatctgccaccatctggttcttttgct
gtttatgatatcaccgaggttgttcctgaacccgggaagcctgataccaacttcaaatta
agtgaaatttttcatgaagaagtacgaggatccgtgagtactgtttgtgagataagtgga
agattcttgattaatcaaagtcaaaaagtacttgtacgtgatgttcaggaggacaactct
gttgttcctgtagcctttttggacatacctgtttttgtatcagatgcaaaaagtttcggg
aatctcttaataattggtgatgcaatgcatggttttcaatttgtcgggtttgatgctgaa
ccatatagaatgattcccctaggtcgcagcattacgaaattggaaacggtttcgatagag
tttttggtgaacggaggtgaaatatatttcgccgtcacagatactgactgtattctacac
gtgtttaaatattcgccagatgaacccaattcactctccggacaaaggttaattcattgt
actagcttcaatttgcactcttctaacacggctttgtgccttatacctaaaagtgaggct
tttccagctacagcaaaaaatccatcaacctttcaagtagtgggtgcccagactgatgga
tctattttcaagattcttccattgaaagaggacgcatatagaaggctatatgttgtccag
caacagtttaatgaaaaagatatacaatttggtggtctcaatcctaggatggaacgatta
tcgaatgtgcactatattcatacccatgtattgagaccaatgttggataataatataatc
aaaaaattcagtatggtttgcatagatcgaagaaaacaaattgcacaaagagcgggtaga
agagcttatttagaaatttggagggatcttatcgatatagaattctcattgaggtcactt
tgtgaataa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (8)   

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