KEGG   Zygotorulaspora mrakii: HG535_0B03390
Entry
HG535_0B03390     CDS       T06976                                 
Name
(RefSeq) uncharacterized protein
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
zmk  Zygotorulaspora mrakii
Pathway
zmk03008  Ribosome biogenesis in eukaryotes
zmk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:zmk00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    HG535_0B03390
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HG535_0B03390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zmk03019]
    HG535_0B03390
   03009 Ribosome biogenesis [BR:zmk03009]
    HG535_0B03390
   03016 Transfer RNA biogenesis [BR:zmk03016]
    HG535_0B03390
   03036 Chromosome and associated proteins [BR:zmk03036]
    HG535_0B03390
Messenger RNA biogenesis [BR:zmk03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     HG535_0B03390
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     HG535_0B03390
Ribosome biogenesis [BR:zmk03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    HG535_0B03390
Transfer RNA biogenesis [BR:zmk03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    HG535_0B03390
Chromosome and associated proteins [BR:zmk03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    HG535_0B03390
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12
Other DBs
NCBI-GeneID: 59234961
NCBI-ProteinID: XP_037143028
UniProt: A0A7H9AY08
Position
2:complement(651025..655413)
AA seq 1462 aa
MGIPKFFRYISERWPLILQLIEGNHIPEFDNLYLDMNSILHTCTHGNSDDVTRRMSEEEV
FAKIFAYIDHLFHTIKPKQIFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALEKAIANGD
EIPKGEPFDSNAITPGTEFMAKLTKHLQYFIHDKITNDSKWREVKIIFSGHEVPGEGEHK
IMDFIRGLRADDSFDPNTRHCIYGLDADLIMLGLSVHAPHFALLREEVVFGRRSSTQASL
ENQNFYLLHLSLLREYMQLEFEEIADELKFEYNFERILDDFILVMFVIGNDFLPNLPDLH
LNKGAFPVILQTFKEALQHLDGYINDNGHINLGRLKVWLQYLSQFELMNFERSDVDVDWF
NQQLENISLEGEKQRARTGKKILLKQQKKIVGLVKPWITKVMSQKCSPNLSEDDIPTLLI
DDDRIKDNLDFLKEFAFQLGLFVTHSRSTDKYSLKLDVDAINPHETEQECDERQRSVRKT
LKMYQQAVLVEDQEELDTEKETYNERFVQWKDNYYRDKFGFSINDSEKLADLTGNYVEGL
QWVLYYYYRGCASWGWYYHYHYAPRISDLEKGLDQLIEFEKGKPFTPFQQLMAVLPERSK
ELIPSVFRPLMYDEKSPIKDFYPREVQLDKNGKTADWEAVVLISFVDQDRLIEAMEPYLP
RLTPEEKSRNSRGSDLIFTYNPQVDEVYKCPLSGIFSDIEHNHCVEREFVRPDFKQSQFR
YGLLAKSKVGADMLAGFPSLRTVTFTSELLYNETRVFQQPSKQQSMVLTIDDVYKARDLG
LDELAERYLGNVVYTRWPFLRESKLVSIRDRSHAKEISDKSSKPFSRQLNDSEKREFSTL
AASMVRKYSSAKATSLKEVTIIVAVLPVTDLIRTPQGAYVKAFASEPEHYPLQLMVEEVA
NVDERYVEREPVSIEEEFPESSHVIFLGDYAYGEEAIIDGYSSDTRLKLTVHKKSRRSEP
IIGKERAAMDRSMVKYFPSFVVAKKLNLHPLFLSKITSRFLVANQSGKNINVGVPIKFEG
RHEKVLGYARRNPKGWEYSTLAIQLLEEYKRLFPDFFKRLSANRSNMPTIQELFPELPTQ
KAADILPNVTNWLKSVTEKFVTVSLESDSLTKVSIQAVEDHVQKHSGHPDETERKQLAKV
PCKAVLDPKKSFTLLRTQRFELGDRVVYIQDSGKIPLFSKGTVVGYTTLGTNLSIQVLFD
HEIVAGNNFGGRLRSNRGIGLDASFLLNITNRQFIYHSKASKQTYKERSAQQKAKSNLDK
SGARAAKKNRAHDLLNHIKKADNTQTAKKDEKREVLNSEDSRQTAGGIGSNPVDSSEFIH
ETDQRTTSVANNIYHSVLNQYVPSGYLPQNMQFQSEVASVPAPSGLPYHLPPGILHPAGI
PLPGADVQLPRPFNGQLPQISHSQPPQSAADNDANSKNLNVVLNSAIEKRASRNKKPEAT
SNGKKNGRQGSRATAQQKPRID
NT seq 4389 nt   +upstreamnt  +downstreamnt
atgggtattccaaaattcttcagatatatctctgagagatggcctttgattcttcagtta
atcgaggggaatcacatccctgagtttgataacttgtatctggatatgaattcaattctg
catacatgtacgcacggaaacagcgatgatgttacgagaaggatgtcagaggaggaagta
tttgccaaaatatttgcttacattgatcatttatttcatacgattaaacccaagcagata
ttttatatggcaatcgacggggttgctccaagagcgaagatgaatcaacagagagcacgt
agatttagaactgcaatggatgcagaaaaggctctagagaaggcgattgccaacggtgac
gagattccaaagggcgaaccctttgattcaaatgccattacgcctggaacggagtttatg
gcaaagctaaccaaacatttgcaatattttatacatgataagataacgaacgattccaag
tggagggaggttaaaataatcttctcaggccatgaggttcccggtgaaggtgagcataag
atcatggatttcatcagaggattaagagccgatgatagtttcgatcctaacacaagacac
tgtatttacgggttagatgcagatttgatcatgttaggattgtccgtacatgcccctcat
tttgctctcttgagagaagaggttgtgtttggtcgaagatcgagcactcaggcttctctt
gaaaatcaaaatttctatctattgcacctttcattactaagggagtacatgcaattggaa
tttgaagagatcgctgatgagctgaaattcgagtacaattttgaacgcattttagatgat
tttatcctcgttatgtttgttataggtaatgactttctacccaatttaccggacttgcat
cttaacaaaggtgcattccctgtaatattacaaacttttaaagaggcattgcaacattta
gacggatatattaacgataatggtcacattaatttgggaagattaaaagtttggttacaa
tacttgtcgcaattcgaactgatgaattttgaacgttcagatgttgacgtagattggttc
aaccagcaactagaaaacatttcattagaaggtgaaaaacaaagggcaagaactggcaaa
aaaattttgttaaagcagcaaaagaaaattgttggcctggtcaaaccttggattacgaaa
gttatgtcccaaaaatgttcgcctaatctctcggaagacgatatcccaactctattgata
gatgacgatcgcataaaagacaatttagattttttaaaagaatttgcattccaattaggg
ttgtttgtaacgcattcccgttccacggataaatattctttgaagttggatgttgacgcc
ataaatcctcatgaaaccgaacaagagtgtgacgagcgtcaaagatctgtaaggaaaacc
ttaaagatgtaccaacaggctgtcctcgttgaagatcaagaggagcttgatacggaaaaa
gagacctataatgaaaggtttgttcaatggaaagataactattatagggataagttcggt
tttagtataaatgactccgagaaattggctgacttaacaggtaattatgttgaaggcttg
caatgggtgctatattactactacagaggctgtgcatcatggggttggtactatcattac
cattatgccccacgtatctctgatctcgaaaaaggattagatcaattgattgagttcgaa
aagggtaaaccttttaccccattccaacagctaatggcagttctaccagaacgctcgaaa
gaactcattcctagtgttttcaggccgcttatgtatgatgagaaatctccaatcaaagat
ttttatccaagagaagttcaactggataaaaacggtaaaacggctgattgggaagctgtt
gttttaatatctttcgttgaccaggatagattgattgaagcaatggagccatatctgcca
agattaacaccggaagaaaaaagtagaaatagtcgtgggagtgatcttattttcacatat
aatccccaagtcgatgaagtttacaaatgcccactaagcggtatcttttctgacatcgaa
cataatcactgcgttgaaagggaatttgttaggcctgatttcaagcaatcccaatttcgt
tacgggttgttggccaaatcaaaggtaggggctgatatgcttgctggttttccttcatta
cgcacagttacttttacaagtgaattactttacaatgaaaccagagtcttccagcaacct
tcgaagcagcaatcaatggtattgactattgatgatgtttacaaggcgagagacttgggg
ttggatgagttagcggaaagatacttaggaaacgttgtctatactagatggccatttctc
agagaatctaagttagtttccatcagggatcgctcacatgccaaggaaatatctgataaa
agttcaaaaccattctctagacaattgaatgacagtgaaaaaagagagttttccacattg
gcagcttccatggtgagaaagtattcctcggcgaaagcaacatcactaaaagaagttact
atcatcgtcgcagttctcccagtcactgatctaataaggacgccacaaggtgcgtatgtt
aaagcgttcgcttcggaaccggagcattacccactgcaactcatggttgaagaagttgct
aacgtggacgaaagatatgttgagcgagaacctgtgtctattgaagaagagtttccggag
agctctcatgtgattttccttggagattatgcatatggagaagaagccattatcgatggt
tatagtagtgatacaaggttgaaattaactgtacacaaaaagtctaggagatctgaaccc
atcattggtaaggagagggccgcgatggacagatcgatggtgaagtacttcccatcattt
gttgttgcaaagaagctcaatttgcaccctctttttttgtcaaagataacatctcgattt
ttagtggcaaatcaatctggcaaaaatattaacgttggtgttccaatcaagttcgaaggt
cgtcatgaaaaagtattaggatatgctagaagaaaccccaagggttgggaatattcaacc
ttggctatacaactgttagaggagtacaaaagattgtttcctgatttctttaaaaggtta
tccgcaaatcgttcaaatatgcccactatacaagagttgtttcctgaattgcctacacag
aaggctgctgatattttgcctaatgttacaaactggctgaaatctgtgactgaaaaattt
gtcacggtttctttagaaagtgactcactcaccaaagtttcgattcaagccgttgaggat
cacgttcaaaagcacagcgggcatcccgatgaaaccgagaggaagcaactagctaaggtc
ccttgtaaagctgtgttggatcctaaaaaatcattcactctgttgcgtacccaaagattt
gaactaggagatcgtgtcgtttatattcaggactctggtaaaattcctttattttccaaa
ggaactgttgttggatacacaacacttggtacaaacttatcaattcaggttctttttgat
catgagatagtagcgggaaacaattttggaggacgcttgagatctaatcgaggtattggc
ctagatgcctcatttctgttgaacataacaaatagacaatttatctatcattcaaaggct
tcgaagcagacttacaaagaacgctctgcacaacaaaaggctaaatccaatctggacaag
tcaggagcacgcgcagcaaagaaaaacagagctcatgatttactcaaccatatcaaaaag
gcagataatacacaaactgccaaaaaggatgaaaagagggaagttttgaactcagaagat
tctaggcaaacagcgggcgggataggctcaaatccagttgattcttctgaattcatccat
gagacagaccagagaacaacttctgttgcaaataatatctaccactctgttttgaatcaa
tatgttcctagcggttatttgccacagaacatgcaattccagtctgaagttgcaagtgtt
ccagcgccatctggtcttccttatcatctaccgcctggaatattacatccagctgggata
cctctccctggagcagatgtgcagttgccacgtccattcaatggccaacttcctcaaatt
agtcattcgcagccaccacaatcagcagcagataatgatgcgaattcaaagaatttgaac
gtcgtgttgaatagtgcgattgaaaagagagctagtagaaacaaaaaacctgaagcgacg
agcaatggcaaaaaaaatggaagacaagggagcagagctactgcccagcaaaaacctaga
attgattag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (10)   

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