KEGG T08725: 121976427

Zingiber officinale (ginger): 121976427

Entry

121976427         CDS       T08725

Name

(RefSeq) pre-mRNA-splicing factor CWC22 homolog

K13100

pre-mRNA-splicing factor CWC22

Organism

zof Zingiber officinale (ginger)

Brite

KEGG Orthology (KO) [BR:zof00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:zof03041]
    121976427
Spliceosome [BR:zof03041]
Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    121976427
Complex C
   U4/U6.U5 tri-SnRNP related factors
    121976427

SSDB

Motif

Pfam:

MA3 HEAT_5MP1_2

Other DBs

NCBI-GeneID:

121976427

NCBI-ProteinID:

XP_042384520

Position

1B:122876163..122884281

AA seq 796 aa
MAAGYSEDSYDSRSSHRSHGAVAAGYDRRNGYSPPVARVSKPFRQRSDGKEESDHERRRK
RRRSARDSESDGEMKREGMRRVADDEDNGVDKRDRRRRGSEEDKEEGKRARRRSENVDRS
PRRRKHEDGGRVRDRDDRRREKREDSPPRRRDARSRVRKGTPRREDSEGESDWSDKEKGT
RRRENHKERNERHEEKPAEGDKLPNQEIKKLDSQPPPMSDSNMGRTGGIYIPPHRMAQLM
REVQDKSSEAYQRLSWDALRKSINGLVNKVNATNIKNIIPELFSENLIRGRGLFCRSCMK
SQMASPGFTDVFSALVAVVNTKFPEIGRLLVVRIVLQLKRAYKRNDKPQLLAATKFIAHL
VNQLVAHEIIALELLTILLENPTDDSVEVAVGFIKECGALLQDISPQGLHGIFERFRGIL
HEGEIDKRVQFLIEGLFAIRKAKFQGFPAIRPELDLVEQEDQFTHEISLDEEIDPETNLD
VFKANPNFLEDEKAYENLKKTILGDESSDDEEDSDAASEDEDEDEEESEEEDDEMMKIKD
ETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRY
YGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLA
YIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLNDTTMQDSFESIFPKDNPKNTRF
SINFFTSIGLGGITENLREYLKNMPRLIMQQQKSVTDSEDEPENSSDSSSQSDSESGSSS
DESERNRRRSKKQNRN

NT seq 2391 nt +upstreamnt +downstreamnt
atggcggccggttactccgaggattcctatgatagcagaagcagccatcgaagtcacgga
gctgtcgccgcgggttatgaccgtcggaacggctacagtccaccggttgctagggtttca
aaacccttccgccaaagatctgacggaaaagaagaaagtgatcatgagaggagacggaaa
agaaggcggagtgctagagatagcgagagcgacggcgagatgaagagggaagggatgcgg
cgcgttgcagatgatgaggacaatggcgttgataagagggacaggagacggcgtggaagt
gaagaagacaaagaggagggaaagagggcaagaaggcgctctgagaatgtagacaggagt
ccgcggagacgtaagcatgaagatggtggcagagtccgtgatagagatgaccgccgcagg
gagaagagagaggatagtccacctcggagacgagatgcccgctcaagagtacgaaagggt
acccctcggcgtgaagacagtgaaggagaaagtgattggtcggataaggaaaaaggtaca
cgaagacgggaaaatcacaaggaacgcaatgaacgccatgaagaaaaacctgcagaggga
gataagttacctaaccaggagataaagaagctagatagtcagcctccacctatgtcagat
tctaacatgggaaggacggggggtatttacatccctcctcacagaatggcgcaattgatg
cgagaagtgcaggataagagtagtgaagcttaccagcgactgagctgggacgctctcaga
aaaagtatcaatggtttggtgaataaagtcaatgctaccaatatcaagaacattattcct
gagctcttctctgagaatttaattcgtggaagggggcttttctgccgatcatgcatgaag
tctcaaatggcttctcctggatttactgatgtattttctgcattggttgccgtcgttaat
actaaatttccagagattggtaggcttcttgtggtgagaattgtcttgcaactcaagagg
gcttataaaaggaatgacaagcctcaactacttgctgcgactaagttcattgcccatctt
gtgaatcaactggtggcacatgagatcattgctctggagcttctcactatattattggaa
aaccctacagatgacagtgtagaggtagctgttggatttatcaaggaatgtggtgcatta
cttcaagatatttcgcctcaaggactccatggtatctttgaacgttttcgtggtatactt
catgaaggagaaattgataaaagggtccagtttctgattgaaggcctttttgctatacga
aaagcaaaatttcagggatttcctgctattcgtccagaactggatcttgttgagcaagag
gaccaatttactcatgagatatcacttgatgaagagattgatccggagactaatcttgat
gtttttaaggcaaatcctaattttcttgaagacgagaaggcatatgagaatctgaagaaa
accattcttggggatgagtcttctgatgatgaagaagattctgatgcagcttcagaggat
gaagatgaagatgaagaagaatctgaggaagaggatgatgagatgatgaagataaaagat
gaaaccgagacaaatcttgtcaatttgcgaagaactatatatcttacaatcatgtcaagt
gttgattttgaggaggctggacataaattgttaaaaatcaaacttgagcctggtcaggag
atggaattatgtattatgttgctggaatgctgcagccaagagagaacatacctacgatat
tatggtcttcttgggcagagattttgcatgattaacaaagttcatcaagaaaattttgag
aaatgctttgttcagcaatattctatgatacatcgtcttgaaactaataagttgcgcaat
gtagcaaaattctttgctcacttgcttggaacggatgcacttccttggcatgtgcttgct
tatatacggttgactgaggaagacacaacttcctcttctcgaatcttcattaagattctc
tttcaggaattgtctgagcatttaggaattcgtttacttaatgagagactcaatgatact
actatgcaagattcatttgagtctatatttcccaaggataaccctaaaaatacaagattt
tccatcaactttttcacatcgattgggttgggtggtatcactgaaaacctgagagaatat
ttgaagaacatgccaagactaattatgcaacaacaaaaatcagtaactgattctgaagat
gaacctgaaaattctagcgactcaagctcccagtcagattctgagtcgggatctagttca
gatgaaagtgaaagaaataggagacgctccaagaagcagaacaggaactga

All links

Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (7)   

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