KEGG   Zingiber officinale (ginger): 122035367
Entry
122035367         CDS       T08725                                 
Name
(RefSeq) pre-mRNA-splicing factor CWC22 homolog
  KO
K13100  pre-mRNA-splicing factor CWC22
Organism
zof  Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:zof00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:zof03041]
    122035367
Spliceosome [BR:zof03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    122035367
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    122035367
SSDB
Motif
Pfam: MA3 HEAT_5MP1_2
Other DBs
NCBI-GeneID: 122035367
NCBI-ProteinID: XP_042450715
Position
1A:139147005..139155112
AA seq 809 aa
MAAGYSDDSYSYDSRSSHRSHGAVAVGYDRRNGYSPPGARDSKPLRHLEERLRSRRSDGR
REFDNEESDHERRRKRRRSARDSESDGEMKREGMRRVVDDEDNGVDKRDRRRSEEDEEEG
KRERRRSENVDRSPRRRKHEDGGRVRDRDDRRREKREDSPPRRRDCRSRARKGTPRREDS
EGESDWSDKEKGTRRRENHKERNERHEEKPAEGDKLPNQEIKKLDSQPPPMPDSNMGRTG
GIYIPPHRMAQLMREVQDKSSEAYQRLSWDALRKSINGLVNKVNATNIKNIIPELFSENL
IRGRGLFCRSCMKSQMASPGFTDVFSALVAVVNTKFPEIGRLLVVRIVLQLKRAYKRNDK
PQLLAATKFIAHLVNQLVAHEIIALELLTILLENPTDDSVEVAVGFIKECGALLQDISPQ
GLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGFPAIRPELDLVEQEDQFTHEI
SLDEEIDPETNLDVFKANPNFLEDEKAYENLKKTILGDESSDDEEDSDAASEDEDEDEEE
SEEEDDEMMKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIML
LECCSQERTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAH
LLGTDALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLNDTTMQDSFE
SIFPKDNPKNTRFSINFFTSIGLGGITENLREYLKNMPRLIMQQQKSVTDSEDEPENSSD
SSSQSDSESGSSSDESERNRRRSKKQNRN
NT seq 2430 nt   +upstreamnt  +downstreamnt
atggcggccggttactccgacgattcctattcctacgacagcagaagcagccatcgaagt
cacggagctgtcgccgtgggttatgaccgtcggaacggctacagtccaccaggtgctagg
gattcgaaacccttgcgtcatcttgaggaaagattgaggagccgcagatctgatgggagg
cgagagtttgacaacgaagaaagcgatcatgagaggagacggaaaagaaggcggagcgct
agagatagcgagagcgacggcgagatgaagagggaagggatgcggcgtgttgttgatgat
gaggacaacggggttgataagagggacaggaggcggagtgaagaggacgaagaggaggga
aagagggaaagaaggcgctctgagaatgtagacaggagtccgcggagacgtaagcatgaa
gatggtggcagagtccgtgatagagatgaccgccgcagggagaagagagaggatagtcca
cctcggagacgagattgccgctcaagagcacgaaagggtacccctcggcgtgaagacagt
gaaggagaaagtgattggtcggataaggaaaaaggtacacgaagacgggaaaatcacaag
gaacgcaatgaacgccatgaagaaaaacctgcagagggagataagttacctaaccaggag
ataaagaagctagatagtcagcctccacctatgccagattctaacatgggaaggacgggg
ggtatttacatccctcctcacagaatggcgcaattgatgcgagaagtgcaggataagagt
agtgaagcttaccagcgactgagctgggacgctctcagaaaaagtatcaatggtttggtg
aataaagtcaatgctaccaatatcaagaacattattcctgagctcttctctgagaattta
attcgtggaagggggcttttctgccgatcatgcatgaagtctcaaatggcttctcctgga
tttactgatgtattttctgcattggttgcagtcgttaatactaaatttccagagattggt
aggcttcttgtggtgagaattgtcttgcaactcaagagggcttataaaaggaatgacaag
cctcaactacttgctgcaaccaagttcattgcccatcttgtgaatcaactggtggcacat
gagatcattgctctggagcttctcactatattattggaaaaccctacagatgacagtgta
gaggtagctgttggatttatcaaggaatgtggtgcattacttcaagatatttcacctcaa
ggactccatggtatctttgaacgttttcgtggtatacttcatgaaggagaaattgataaa
agggtccagtttctgattgaaggcctttttgccatacgaaaagcaaaatttcagggattt
cctgctattcgtccagaactggatcttgttgagcaagaggaccaatttactcatgagata
tcacttgatgaagagattgatccggagactaatcttgatgtttttaaggcaaatcctaat
tttcttgaagacgagaaggcatatgagaatctgaagaaaaccattcttggggatgagtct
tctgatgatgaagaagattctgatgcagcttcagaggatgaagatgaagatgaagaagaa
tctgaggaagaggatgatgagatgatgaagataaaagatgaaaccgagacaaatcttgtc
aatttgcgaagaactatatatcttacaatcatgtcaagtgttgattttgaggaggctgga
cataaattgttaaaaatcaaacttgagcctggtcaggagatggaattatgtattatgttg
ctggaatgctgcagccaagagagaacatacctacgatattatggtcttcttgggcagaga
ttttgcatgattaacaaagttcatcaagaaaattttgagaaatgctttgttcagcaatat
tctatgatacatcgtcttgaaactaataaattgcgcaatgtagcaaaattctttgctcac
ttgcttggaacggatgcacttccttggcatgtgcttgcttatatacggttgactgaggaa
gacacaacttcctcttctcgaatcttcattaagattctctttcaggaattgtctgagcac
ttaggaattcgtttacttaatgagagactcaatgatactactatgcaagattcatttgag
tctatatttcccaaggataaccctaaaaatacaagattttccatcaactttttcacatcg
attgggttgggtggtatcactgaaaacctgagagaatatttgaagaacatgccaagacta
attatgcaacaacaaaaatcagtaactgattcggaagatgaacctgaaaattctagcgac
tcaagctcccagtcagattctgagtcgggatctagttcagatgaaagtgaaaggaatagg
agacgctccaagaagcagaacaggaactga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (9)   

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