>Copia_1731 
MGLEYKALLANETWKLADLPRNRRCVACKWVYSLKRDVSGRIERFKARLVAKGCSQKFGVDYFETFSPVCRLESVRLILA
LAAEMQLYLHHMDVCTAYLNSELKDTVYMKQPQGFTDAANPDQVLLLRKAIYGLKQSGREWNSKLDGVLKDLGFKACNHE
PCLYQQSGQGNLMLILVYVDDLILACQSREDMEDLKAKISESFECTDKGPLHLFLGMEVQRDGDLGEITLGHSQYIKELL
RDYG
>Gypsy_17.6 
LNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQI
EMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLA
KANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA
>Gypsy_297 
LNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQI
EMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLA
DANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYA
>Gypsy_412 
IKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQ
IELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKC
REYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFA
>Gypsy_Amn-ichi 
LREFIETNLRKGFIRPSQSPAASPVMFVKKKSGDLRLVVDYRALNNITKRNSYPLPLISDLLDRLRGAKVYTKLDLRGAY
NLVRIREGDEWKTAFQTKFGLFESRVMNYGLCGAPATFQHFVNDIFQDYLDRFLIIYLDDFLVFSRSQSEHENHVKMVLQ
RLRDHGLYAKLEKCAFDLQEVDFLGYRISPLGLSMDPAKVSAVLERAPTNKKEVQRFLGFANYYRKFIPDFA
>Gypsy_Amn-ni 
MESYIEESLAAGIIRQSTSPAGAGFFFVGKKDGGLRPCIDYRGLNKITIRNRYPLPLMSTAFEILQEASIFTKLDLRNAY
HLVRIKQGDEWKTAFNTPTGHYEYLVMPFGLTNAPAVFQALINDVLRDMLNKFVFVYLDDILIFSSSLQEHIFHVRKVLQ
RLLNNHLYVKPEKCQFHVTQVKFLGFIIKPGQIQMDPQKIQAMVDWPSPSSVKEVQRFLGFANFYRKFILNFS
>Gypsy_Amn-san 
MKEYISENLQRGFIRPSTSPAGAGFFFVEKKDGGLRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAY
NLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALS
RLRENFLFAKLEKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKDFS
>Copia_Araco 
MDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIIS
LAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYE
HALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKK
FK
>Retrovirus_ASSBSV 
LGADCIYATSSPWNTPILPVPKADGKTYRMVQDFRAVNDVTTGVDLPVPDPHVSLSNLSPKHQYFTVVDLANAFFSIPLH
VDSQPLFAFTYDNQQYTYSVLPQGYRCSPGIFNRVLKDHLKEIVIPDGVVLIQYVDDLLLAACSSDQCLAATKILLDFLA
TKGYKVKRSKVQTCRRTVLFLGREVSAEGAGLSTAHRNSILHHPRPTTVSGLLSFLGLTGYSRTHIPDYT
>Gypsy_Athila41 
LDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNEKDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHP
YYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGPSFS
SCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIVLDHKISEKGIEVDKGKVEVMMQLQPPKTVKDIRSFLGHAGFYRRFI
KDFA
>Gypsy_B1147A04.5 
LVSFLRANADVFAWRPADMPGVPREVIEHRLAVRSGARPVRQKVRRQAPERQAFIRSGYHQIRMAREDEEKTAFITPIGT
YCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDDLVVKTRNQETLLSDLAETFESLRSARIKLNPDKCVFGVPAG
KLLGFLVSARGIEANPEKIRAIERMRPPSKLRDMQCVTGCMAALSRFISRLG
>Retrovirus_BAEVM 
LELGVLRPCRSPWNTPLLPVKKPGTQDYRPVQDLREINKRTVDIHPTVPNPYNLLSTLKPDYSWYTVLDLKDAFFCLPLA
PQSQELFAFEWKDPERGISGQLTWTRLPQGFKNSPTLFDEALHRDLTDFRTQHPEVTLLQYVDDLLLAAPTKKACTQGTR
HLLQELGEKGYRASAKKAQICQTKVTYLGYILSEGKRWLTPGRIETVARIPPPRNPREVREFLGTAGFCRLWIPGFA
>Gypsy_Bagy1 
LNKGFIRPSSSPSCPVLFVKKKDGMDRMVVDYRPVNLVTIKNKYPLPRINDLYDQLTGSSFFSKMDLRLGYHQIKIKNGD
IPKKAFVTRYGQYEYTVMSFGLTNAPATFSRLMNSIFMEYLDKFVVVYLDDILIYSMNEREHAEHLRLVLMKLREHRLYA
KFSKCEFLGHVISGKGIAVNPERVQAVLDWTQPESVKQVRSFLGLASYCRRFVENFS
>Gypsy_Bagy2 
LEAGIIYPVAHSDWVSPVHCVPKKGGITVVPNDKNELIPHRIVTGYRMVIDFRKLNKATRKDHYPLPFIDKMLERLSNTH
FCFLDGYSGFSQISAAQSDQEKTTFTCPFGTFAYRRMAFGLCNAPATFQRCMMAISSDFCEKIIEVFMDDFSVYGSSFDD
YLSNLDRVLQRCKDTNLVLNWEKCHFMVNEGIVLGHKISAKGIEVDKAKVDAIEKMPCPIDIRGIRSFLGHAGFYRRFIK
DFS
>Copia_Batata 
MQEEMNSLYVNDTFELVKAPKNRKALKNRWVYRVKHEEGTSVPRFKARLVVKGFSQKKGIDFDEIFSPVVKFSSIRVVLG
LAARLDIEIEQMDVKTAFLHGDLDEEIYMEQPEGFKVKGKEDYVCRLKKSLYGLKQAPRQWYKKFTSVMSKHGYKKTSSD
HCVFVNRYSDDDFVILLLYVDDMLIVGRNASRIQELKQELSKSFSMKDMGPAKQILGMKIIRDRQNKKLWLSQEKYIEKV
LERFH
>Gypsy_Beetle1 
LAKGFVQESLSPCAVPVILVPKKDGTMRMCVDCRAINNITIKYRYPIPRLDDLLDELHGATIFSKIDLRSGYHQIRIKEG
DEWKTAFKTKSGLYEWRVMPFGLTNAPSTFMRLMHEVLRPFIGSFVVVYFDDILVYSNSEQDHLIHLKKVFLKLREKKLY
AKMEKCEFFTSSVSFLGFIISSQGISMDESKVEAIKSWPIPKSITEVRSFHGLASFYRRFIRGFS
>Retrovirus_BFV 
LRQGVLRQQNSEMNTPVYPVPKADGRWRMVLDYREVNKVTPLVATQNCHSASILNTLYRGPYKSTLDLANGFWAHPIKPE
DYWITAFTWGGKTYCWTVLPQGFLNSPALFTADVVDILKDIPNVQVYVDDVYVSSATEQEHLDILETIFNRLSTAGYIVS
LKKSKLAKETVEFLGFSISQNGRGLTDSYKQKLMDLQPPTTLRQLQSILGLINFARNFLPNFA
>Retrovirus_BIV 
LAEGKISEAAWDNPYNTPVFVIKKKGTGKWRMLMDFRELNKITVKGQEFSTGLPYPPGIKECEHLTAIDIKDAYFTIPLH
EDFRPFTAFSVVPVNREGPIERFQWNVLPQGWICSPAIYQTTTQKIIENIKKSHPDVMLYQYMDDLLIGSNRDDHKQIVQ
EIRDKLGSYGFKTPDEKVQEERVKWIGFELTPKKWRFQPRQLKIKNPLTVNELQQLVGNCVWVQPEVKIPL
>Gypsy_Blastopia 
VEQSIVRKSTSNVASRIVVVRKKDGTLRVCVDYRKLNTMVLMDCFPVPIMEEVLEKLQSAKWFTTMDLQNGFFHVAVEEA
SKPYTAFVTREGLFEFNKAPFGFKNSPAAFIRFVQFIFQELINSNIMQLYMDDIIVYAATPEECMEKTEMVLKRAAEFGL
KIKWKKCNFMQRRIHFLGHIIEGGQICPGKEKTSAVNSFGTPQNVKAVQGFLGLTGFFRKFIPGYA
>Retrovirus_BLV 
LEAGYISPWDGPGNNPVFPVRKPNGTWRFVHDLRATNALTKPIPALSPGPPDLTAIPTHLPHIICLDLKDAFFQIPVEDR
FRSYFAFTLPTPGGLQPHRRFAWRVLPQGFINSPALFERALQEPLRQVSAAFSQSLLVSYMDDILIASPTEEQRSQCYQA
LAARLRDLGFQVASEKTRQTPSPVPFLGQMVHNQIVTYQSLPTLQISSPISLHQLQAVLGDLQWVSRGTPTTR
>Gypsy_Boudicca 
RSRELIRSSNSPWSSPLHMVPKKDSNDWRPTDVYRRLNAKTIPDRYPLPHIHDLTATLKGTTVSSKIDLVKAYDQIPMAT
NEIPKTAIITLFGLYEFLQMPFGLRNAAQTFQRFIDDVFRGLNFVHAYVDDCLIASPDRESHLKHLDIVFDRLQRHGITV
NIQKCQIGTNSLDFLGHTIDAQGIRPLRSKMVAILDYPEPTTIKQLRTFNGLVSFYRRFIPKCA
>Caulimovirus_BRRV 
LINKGLIRPSKSPHSAPAFYVENHSEIKRAKRRIVINYKAMNEATIGTPKTLPRADYIMNRLKGKIWFSTLDVKSAYWQL
RLTEESKPLTAFSYPPPKHYEWNVLPMGLKQAPGIFQEFMNRSLHNLEHICLVYVDDIIIFSEKDKNDHLSKVLQVLKRC
EDEGIILSQPKAKIAHKEIDFFGLHISEGEIILQPHILEKLVLFPDEIENRKQLQRFLGNLNYISEKGFFKDFA
>Caulimovirus_BsCVBV 
LLKMGLIRPSTSRHRTMAMIINSGTTVDPVTGEEKRGKERMVFNYKTLNDNTYRDPYSLPGINTIIQKVGRSKIYSKFDL
KSGFHQVAMDPESIPWTAFLTPQGLFEWLVMPFGLKNAPAIFQRKMDNCFSRYSDFIAVYIDDILVFSESERDHEKHLRV
MLQVCQENGLVLSPTKMKVAVKTIEFLGAILGNQCVQLQPHIIQKIVDFDEEHLQTKQGIRSWLGILNYARTYIPNIG
>Caulimovirus_BSGFV 
IDRLKRLGFIGEEPLRHWKRNQIKCKLEIKNPDLIIEDRPLKHVTPAMKETMTKHVQRLLDIKVIRPSTSKHRTTAIMVN
SGTEIDPITGAEKKGKERLVFNYKRLNDNTEKDQYSLPGINTIIARISHSKIYSKFDLKSGFHQVAMEEESIPWTAFWAI
NGLYEWLVMPFGLKNAPAIFQRKMDNCFRGTEKFIAVYIDDILIFSDSKEAHRTHLRQFITICEENGLVLSPTKMKIGVQ
QVDFLGATIGDSKVRLQPHIVKKVLETKEESLSETKALRRWLGILNYARAYIPDLGKILGPLYSKTSGKGERKL
>Caulimovirus_BSMyV 
LLQLKVIRPSSSRHRTTAMIVESGTEVDPKTGQEKRGKERLVFNFKRLNDNTEKDQYSLPGINTIISRIGNAKVYSKFDL
KSGFHQVAMDPESIPWTAFLANNELYEWLVMPFGLKNAPAIFQRKMDTCFKGTEAFIAVYIDDILVFSETEQLHRDHLRK
FLEISKANGLILSPTKMKIGVKTIDFLGASIGNSKIKLQPHIIKKIADFDDHRLKETKGLRAWLGILNYARNYIPNLG
>Caulimovirus_BSOLV 
IGKMKKLGYIGEEPLKHWEKNQVKCRIEVKNPDMIIEDRPLKHVTPTMKETMAKHVQKLLELKVIRPSSSKHRTTAMIVE
SGTEVDPMTGKERRGKERLVFNYKRLNDNTEKDQYSLPGINTIIKRIGNAKIYSKFDLKSGFHQVAMDPESIPWTAFWAI
DGLYEWLVMPFGLKNAPAIFQRKMDNCFRGTEDFIAVYIDDILVFSETIHQHKEHLKKFMTICEKNGLVLSPTKMKIGTR
QIDFLGATIGNSKIKLQPHIIKKIIEMKDEELKEVKGLRKWLGILNYARSYIPKLGKILGPLYAKTSPNGERRM
>Caulimovirus_BSVAV 
LLELKVIRPSTSKHRTTAIIVQSGTEIDPLTGKEKRGKERLVFNYKRLNDNTEKDQYSLPGINTIISRIGKSKIYSKFDL
KSGFHQVAMDPESIPWTAFWAIDGLYEWLVMPFGLKNAPAIFQRKMDNCFRGTEEFIAVYIDDILIFSDNISDHRKHLSK
FLEICKANGLVLSPTKMKIGAKEIDFLGATIGNSKIKLQPHIIKKIIETKDEELKETKGLRKWLGVLNYARAYIPNLG
>Gypsy_Burdock 
LKDGIIRPSSSPYNNPVWVVDKKGTDEEGNTKKRLVIDFRKLNLKTIDDKYPIPNVVWILSNLGKARFFTTLDLKSAFHQ
ILLAEKDRAKTAFSVGNGKYEFCRLPFGLKNAPSIFQRAIDDVVRDRIGKSCYVYVDDVIIFSNGIEDHVNDVAWVLDRL
SGANMRVSKEKSFFFKESVEYLGFMVSSGGITTSPSKVEAIQKYNQPTNLFSVRSFLGLASYYRCFIKDFA
>Retrovirus_CAEV 
VEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYE
PYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIV
KDLANYIAQYGFTLPEEKRQKGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQKLVGELVWRQSIIGKS
>Gypsy_Calypso 
VARSRPHPISDSAWVSPVQVVLKKGGMTVIKNDKDELISTRTVTGWRMCIDYRKLNNATWKDHYPLPFMDHMLERLARQS
YYCFLDGYSSYNIAIDIKDQEKTTFTFPFGVFAYRCMPFGLCNALATFQRCMMAIFSDMVEKCIEVFMDDFSVFGPSFDG
CLSNLERVFRCEESNLVLNWEKCHFMVQEGIVLGHKISVRGIEVDKVKIDVIEKLPPPMNVKRMRSFLGHDGFYRLIKDF
S
>BEL_Cer10-1 
AGIVERVWPNMIGADDVKYYTPHRAVIKETSNTTKLRIVLDASSPPGPEPSLNDCLYAGDNLVTPLYGILLRGRIYPYVV
VADIEKAFHQVRLPTEFRNASLFLWLKDITKPPTPDNICTYRFTRIPFGVASSPWLLAASILHFLDRNPNPLNQRVRENL
YVDNCLIGTFDKSEITEIIKNSKDIFMKMKMNLREYVTNSEEHMVAIEVEDQAKHRVIKLLGCEWDSHEDIDTLSVALAV
LDIDHPTKRQVASKMAETFDPLGLITPLIVSFKRLMQNLW
>Gypsy_Cer1 
LNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYTVFDMIAGFWQIPLDEK
SKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMK
LRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFA
>Gypsy_Cer2 
IQSERIVESNTPWTSPIVLVKKKNGSLRVCLDFRKLNEVTIPDNYPLPRIDAIIEKVGGSRYFSVLDMANGYLQLRLDAE
SSYKCGFITENKVYAYTHLPFGLKSAASYFQRALRQVLDGLEDVMVYIDDVLIYSKTFEDHIRTLEMVLERFRKFNLKAS
PNKCEFFKESIVFLGHEISRDNYSPNRVNVETIRSMPTPTNVNEVRRFVGMSGFFRKFIPNFS
>Gypsy_Cer3 
IQSGRIVESNTPWTSPIVLIKKKNGSLRVCLDFRKLNEVTVPDNYPLPRIDSIIEQIGGSKYFTSLDMANGYLQLRLDAE
SSDKCGFITENKVYAYTHLPFGLRSAASYFQRDLKQVLGLEKEVTVYIDDVLIFSKTFEEHLNSLRKVLERFRKFNLKVS
PNKCEFFKQSITFLGHEINADNYKPNRINVDAIVNLPTPRNVGDVRRFIGMSGFFRKFLPNFS
>Gypsy_Cer4 
LDLEVLEPITHSDWAAPIVVIRKKDTGKVRVCADFKCSGLNNSLIEEIHPLPTSDDLFGTLQGCIFSKIDLKDAYLQIAL
DSESQKLAVINTHKGLFKYRRMTFGLKPAPAKFQKIIDKMIAGLPGVAAYLDDVIVSANSLEEHEKVLHELLKRIKDYGF
RISPEKCNFAQSEITFLGFIIDKRGRRPDPKKTSVIRSMKAPTDQKQLMSFLGAICFYGRFVPKMS
>Gypsy_Cer5 
QEMGVIVPITYAKWAAPIVVIKKKGTGKIRVCADFKCSGLNAALKDEFHPLPTSEDIFSRLKGTVYSQIDLKDAYLQVEL
DEEAQKLAVINTHRGIFKYLRMTFGLKPAPASFQKIMDKMVSGLTGVAVYLDDIIISASSIEEHEKILRELFERIKEYGF
RVSAEKCAFAQKQVTFLGFIVDEHGRRPDPKKTEVIRSMKAPTDQKQLASFLGAVSFYSRFVPKMS
>Gypsy_Cer6 
KDMGVITPITYSKWAAPIVVIRKKESNKIRVCADFKCSGLNSALKDEIHPLPTCEDLFAKLKGSVFSKIDFRDAYLQIEL
DDESQELAVINTHLGLFKYVRMAFGLKPAPAVFQKIVDKLISGIPGVSAYLDDLIIAASSYDEHEAILRQLFDRIREYGF
RVSPEKCMFAVSEISFLGFIVDEKGRRPDPNKASKIRSMKAPGDQKQLSSFLGAVCFYSRFVPKMS
>BEL_Cer7 
KNILEEVDVSKDTEGMRIHYNPHSPVLTPQKTTTKCRVVIDGSAHFKNEPSLNDAIYQGPTILPDSVDTRFRSGKTVLLA
DVEKAFLQVHLNESDRDVTRVLWVKNPDLPPTRENLRVLRFTRVLFGLNVSPFLLGATILFHLDRMEDKKLANTIARNLY
VDNLIIATDDDSEAMFKLYNKVKTVFNGLSMNIREFQSNDQSFTDLLDECDKTSESEVKVLGVKWSTKTDQITSSTTDID
ILENSRRTVSSAIASIYDPMGLLVPLLLPLKLFQRKLW
>Gypsy_Cereba 
LDKGYIRESLSPCDVPIILVPKKGWYIAYVCLLEALIILLFVIVILFLGMICIDELSGYTIFSKVDLRSGYNQICMKLGD
EWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVLYFDDILIYSRSLEEHLDHLRVVFLALRDARLFG
NLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGLAGFYRHFVRDFS
>Caulimovirus_CERV 
PLDLKVIKPSKSPHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLPNKDELLALVRGKKIYSSFDCKSGFWQV
LLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPSIFQRHMQTAFNQHSKYCCVYVDDILVFSNTEEEHYIHVLNILRRCEK
LGIILSKKKAQLFKEKINFLGLEIDQGTHCPQNHILEHIHKFPDRIEDKKQLQRSLGILTYASDYIPKLA
>Gypsy_CFG1 
LDRLVAEGTISPVEFSEWATPIVPIVKSDKSIRICGDYKVTVNKVSKLDNYPIPKTEDLYATLGGGTDYSKLDLSQAYQQ
LELDDSSKPYTTINTHKGLFVYNRLPYGVASAPGIFQRTMENLLQGIPQVIVRVDDILVTGKNRRQHLENLEAVLNRLEK
AGVKLKRSKCYFLRKEVEYQGHRINSEGMQPIEGKVMAIKDAPAPTNVKELQAFLGMLNYYSCYLPRLS
>Gypsy_Cft-1 
LAKGWIRRSTSSAGTPCMFVPKANGKLRLVQDYRKLNEITIKNRYPLPNIEEAQDRLTGSDWYTKIDLRDAFYAIRMAEG
EEWKTAFRTRYGLYEFLVMPMGLTNAPASCQDLVNETLRDLLDVCVVAYMDDILVYTKGSLQEHTKQVQDVFERLTKSGF
KTAPEKCEFHKKEVKFLGFIISTTGITIDPAKTQSIREWPEPKTVKDVQSFLGLANYNRKFIKDYS
>Gypsy_Cgret 
LKKGYIRESTSPAGSPILFVPKKNGKLRLCVDYRMLNEMTIKNRYPLPLIDELQRLLHGANWFTALDLKGAYNLIRMKEG
EEWKTAFRTRKGHFEYLVMPFGLTNAPATFQNMINQVLRKFVDIFVVVYLDDILIFSPTLKQHKEHVHLVLQALQNAKLL
VEPEKSKFHAQEVEYLGFTITPGHIHMSKDKVRSIQEWPTPTNLKEVQSFLGLVNFYRKFIKYYG
>Copia_Cico1 
KAAELQSWKQNKVYEEVPNIGQKCISVRWVCTVKDHECGPKPKARLVARGFEERNTQDLDKDSPTCSTDALRVTITIIEH
NNWKLNSIDVKTAFLQGELLDRNIFVKPPAAAKVSKDVIWKLKKCVYGLADASKSWYKRVQSFLISIGAQITKVDQSVFY
WHFKGKLQGVVALYVDDILWGGTAIFEESVIQLLRNQFTIGKESSEKFKYIGLEVKQSMNHTEICQDDYIKNVTQIV
>Gypsy_Cigr-1 
LEEEIIEPSNSPWRAQVLVAREGSKKPRMVIDYSQTVNVFTELDAYPLPSIESIVNKVTQDKVYSSLDLRSAYHQIPLKD
SDRPFTAFEAEGQLYQYKRLPFGVTNGVSAFQRIINRFIQDNHLNKVYAYLDDITVTGETLEEHDRNLKKLLVAAKRHNL
TINEEKSKLRMTSIDFLGYRISYGDARPDPERLRPLLNLPPPDTPRELKRIQGMFAYYAKWISRFS
>Gypsy_Cinful-1 
LSAGVIREVKYPEWLANTVMVKKANGKWRMCIDFTDLNKACPKDEFPLPRIDSLVDATASSELMSLLDCYSGYHQIWMKR
EDEPKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQENHIADLQETFASFRQAGL
KLNPEKCVFGVKKGKFLGCLVSTKGIEANPSKIEAILRMEPPTTKKGAQRLTGRLASLNRFISRSA
>Gypsy_Circe 
VKSIVRLRWMLKRHLHRLGHLQLPCISNQARCDFVSMQENMQSLQTAKSSNLTSKMFRSRIPCQDCFHRSKAPLSVQKNP
FGLSIHKPCAVCTSLYPINNRMYSTSKICWFCQTISKTIFCICPKRKAGLTINVQKSQFCLKTVDYLGYLVGEGTLQVNP
NKIAAVGDFPVPKTKQLRRFLGMTGWYQRLISNYS
>Caulimovirus_CLNV 
LLELKVIRPSKSRHRTTAMIVQSGTEMVLQKDKNGKEKMVEKRGKERLVFNYKRLNDNTEKDQYSLPGINTIIQRIGRSK
IYSKFDLKSGFHQVAMDPASIEWTAFWAIDGLYEWLVMPFGLKNAPATFQRKMDMCFAGTEHFIAVYIDDILVFSETEED
HVKHLHQMLHICEKEGLVLSPTKMKIGATSIDFLGATIGRSKIRLQPHIIKKITEAKEEELQTTKGLRAWLGILNYARSY
IPNLG
>Caulimovirus_CmYLCV 
VSSTLEEVCDENPLDVKNTNTELVKIELINPEKEVNVPNNIPYSLRDINEFSQECADLVRKGIIEESKSPHSAPAFYVEN
HNEIKRKKRRMVINYKALNKATIGNAHKLPRIDSILTKVKGSNWFSTLDAKSGYWQLRLHPQSKPLTAFSCPPQKHYQWN
VLPFGLKQAPGIYQNFMDKNLEGLENFCLAYIDDILVFTNSSREEHLSKLLVVLERCKEKGLILSKKKAIIARQTIDFLG
LTLQENGEIKLQPNVLEKLELFPDAIEDRKQLQRFLGCLNYIADKGFLKEIAKETKNLYPKVSITNPWHW
>Copia_CoDi2.4 
ESIERAQLHEYETFVDIGKATTLGKHVTNAPKGYKKIRVHTVYDVKHDGRHKARMVAGGHLTPVPTESVYSGVVSLRSLR
IVVFLAELNGLKLWGADIGNAYLEAKTKEKVFIVAGPEFAELEGHILVINKALYGLRSSGLRWHERFADTLRDLGFTASK
ADSGVWMRENSGVYEYIAVYVDDIAVAAQDPEGIIRQLKEKYKYKLKGVGPLQYHLGCTFERDKDGTLSYHPRKYISRMM
EQYE
>Copia_CoDi3.1 
IRKEMDTLESMKTFTIKDKGERAPSDYKRIPMWIIFDVKMDFRRKARLVAGGHVTDPPDEDTYSSVASRESVRLGFLLAS
LNNLDLVSVDIGNAYVNADCREKVFSIAGPEFGEHEGKVVLIAKALYGLKSSGAAWHSHLAQNLRFLGFVSSKADPDMWF
RKAQRLDKTEYYEYIISYVDDLTIVSADTKAILKALENIPYTLKGGSAPRTFLGATTGVHTFNDGTKAWYMSAKQYLTNA
ILNIE
>Copia_CoDi4.1 
IAKEMKNVMPAFEFRDDDRMPVGHKEITCHMIFDIKAFSLQRKARLVAGGHTTDPPKDMTFASVVSRDSVRIAFLLAALN
DLDILAADVQNAYLNAATKEKVWTRAGKEFGSNAGRPVVIVRALYGLKSSGARWRDHMAATLREADYTSSRADPDVWMRP
ATKPDGFKYWEYVLVYSDDILVVSHDPKRTMDFLESKNTLKNGTVAEP
>Copia_CoDi4.3 
IRKEMKNVMPAFKVLEPNASKPVGYTWIPCHMIFDIKMDFTRKARFVAGGHVTDPPSSITYASVVSRDSVRIALLIAALN
SMQILGADAQNAYLNAPVREKVYTTCGPEFGNSTEGRYAIIVRALYGLKSSGAAWRAHLAATMEELMFTSCIADPDVWLR
PFQNEGGLKFYEYVLIYTDDFLCISHDPKSILDTIGKHFKLKPESIKTPDTYLGANLGHFSLPDKPDKPRWSMSSTNYVK
QAVANVE
>Copia_CoDi4.4 
IEKEMANVMPAFKFLEGDENLPVGCQKIDCHIIFDVKLDLTRKARYVAGGHMTEAPAALTYSSVVSRESVRIAFMAAALN
GLDILAADAQNAYLNADCRESVYTIAGPEFGAARQGLRVLIVRALYGLKSSGAAWHAHLAQTMSDLKFRPCVADPDVWLR
PAVKGNGDKYYEYVLIYVDDILAVSEKPDRIMETLSSLYKFKEDPKTRKKYGPPDRYLGANVGKYKLPGATKEHWYMSSD
DYVKAAVTNVE
>Copia_CoDi4.5 
IKKEMQNVRIAFDILPDGTTAPIGYQHVRCHMIFDVKMEDFRRKARLVAGGHTTEAPPTLTYASVVSRETVRIALTMAAL
HGLPIMAADVMNAYVTAPNKEKIWTTLGPEFGSDCGKKAIIVRALYGLKSAGAAFRSHLGECMRNLGYKPCLADPDLWMK
PEYDPSDSFKYWSYILCYVDDILVIHHQPEDVIKKIDKYFPLKPGSVGKPDMYLGTKLREITFTNGEKAWAMSPSKYVQE
SVSNCI
>Copia_CoDi5.1 
AANEIGRLTQGNPPHSTTGSQTMHFIAHNAIPPGRKATYLRIVASIRPQKSEPKRIRFTVGGNLVQYPGKVSTPTADITT
AKILFNSVLSTPAAKFMCIDIKDFYLGTPMARYEYMRIPVPDIPPTIMAHYQLAPLIHNNSITVEIRKGMYGLPQAGILA
HDRLVEHLAAHGYIKTKHTAGLFRHVTRPIQFTLVVDDFGVKYTGTEHAQHLIDTLQALYTITIDWDGTRYLGLTLAWDY
ERRTLDMSMPDYIDQALTRFQ
>Copia_CoDi5.2 
AANEMGRLSQGVQPHMPTGTNTIHFIPHTEKPHDRKATYLKIVAAIKPHKAEKYRIRFTVGGDRIEYSGPTSTPTAALPA
IKILVNSVISTDGAHFMTCDLKDFYLGTPLPVYKYMRIPAKHIPACIMEQYKLAPLVHNDNVLVEIRKGMYGLPHAGRIA
NDRLLQHLALDGYHQAKHTPGFFTHESRPISFSLVVDDFGVKYVGKEHAEHLVQCLEKLYTVTTDWTGSLYCGLTFTWDY
NARHVDMAMPGYIEKALQQFQ
>Copia_CoDi5.3 
AANEMGRLSQGVKPNMPTGTDTMHFIPHTAKPHDRKATYLKIVAAIKPHKAEKYRIRFTVGGDRIEYNGPTSTPTAALPA
IKILVNSVISTKGARFMTCDLKDFYLGTPLPVYEYMRIPAVHIPDCIMEQYKLAPLIHKGNVLVEIRKGMYGLPHAGRIV
NDRLIDHLALDGYHQAKHTPGFFTHETRPISFSLVVDDFGVKYVGREHAEHLLHCLEKLYTVTTDWTGALYCGLTFTWNY
EQRHVDMAMPGYVDKALQRFQ
>Copia_CoDi5.4 
YANELGRLTQGIRDIPGTNTMFYITKSEIPEDRRKDITYGRIVVVVRPQKKEQERTRLTVGGNLIDYPWEVATPTADLTT
AKLLFNSVISTPGAVFVVLDCKNFYLQTPMKRPEFMRLKLSLIPQEIIDKYKLNDKVDDRGWIYVRIEQGMYGLPQAGRL
ANELLAKRLDKEGYYQCQYTPGLWRHKWRPITFSLVVDDFGIKTVGLSHAKHLKNALEKHYEVTTDWKGNLFCGIKLTWD
YKNRTVDLSMPDYIPKALTRFQ
>Copia_CoDi5.5 
CANEIGRLAQGIGKRIDGTNTMFFINKQDIPNDRFKDITYAKFVCDYRPGKSEPNRTRLTMGGDRINYPGEVGTPTADLL
LVKILFNSIISTHGARCMTADIKNFYLNTPMQRYEYLRIRLSDIPQEVITEYGLLNKVAADGYVYLEVRKGMYGLPQAGL
LAQELLEKRLAEHGYFQSKIIPGLWKHVTRPVCFTLVVDDFCVKYIGKQHAEHLMGVLKQHYEITEDWKGEKYCGLTIDW
DYNNKKVHLSMPGYVNKALKRFG
>Copia_CoDi5.6 
FGKEIGSLAQGDDLTGTKGTDTIVFLDRIGIKNIPKDRVITYARIVVDYRPQKEDPNRVRITAGGNLINYPGELTTRTAD
LTTAKLMWNSVISTDNARYACYDVKNFYLGTPLDRYEYMRIPLHLIPQHIIDQYDLTNKALNGFVYVEIRKGIYGLPQAG
MLANKLLKERLAPHGYLEVRDTPGLFIHKTRPIMFTLVVDDFGVKYVGKEHADHLVSVLKRYYTLSEDWTGSLYCGVSLK
WNYKERWVDISMPGYIKNALQRYN
>Copia_CoDi6.1 
VVKEVNGHIENNHWQLVPRSEVPPDAEVVPSVWAMRRKRNLTTNEITKYKARLNMHGGKQTYGVNYYETFAPVVSWFGIR
LLVVFAIVFKWSLRQVDFVMAYTQAPIEMDMYMELPAGLSTKHGDSKSHVLKLLANLYGQKQAGRVWNEYLVGKLRSIGF
EQSKVDDCIFYRGDVVFIVYVDDGMFLGRCDRQLTSIIKELVGLGLDIEDQGHPADYVGVNIRKLQDGSYEFTQRAIIDS
VIADVG
>Copia_CoDi6.2 
IMKEWNDMKKRNVWIVQKRCDMPKDRRCVKSKWVFKLKRNGVFRARIVACGYSQIPGVDFEESYSPVMNDITLRILLVIW
IVMTLKAIIADVETAFLYGKLLEVIFMECPPGMMGTTKDDVLRLLMCIYGLVQAAARYYAYMAKTLRSMGFKGGDVDPCL
FVKWINGRVCFVGLYVDDNLIIGHPELVDDTIKQLRQKGLILKISDLDDYLSCHIVLSKDKRRAWLGQPHLIASIVNKFG
>Copia_CoDi6.3 
IRKEFRDMVKRKVWRRVKKSSIPSNRRCVKSKWVFKIKRNGVFRARLVACGYSQIPGVDFSESYSPVANDITIRLLLVAM
ILFGLSAKIVDVETAFLYGELEEEVYMENPEGLEDSNDDEALLLLTTIYGLVQAARQYYKKARGILRKIGFTGGDVDPCL
FVKKSSLGIVFIALYVDDNLLVGHPKAIECAIEQMKRHGLILKVEDDLKDYLSCEIQFSKDKTKAWLGQPHLISNLMSKF
G
>Copia_CoDi6.4 
AAKEMESIRDRNVLGGLIKLSSLPTGTRVLGTRWIFKWKQDGFDHDKYTEKARLVVKGYEQISGVDYTESYSPVANETTV
NLGIALGLYYKHVLKQDWIEHVIDVETAFLHAERLNSDKKTYIKVPSGFEELTGIKTGTDDVIELTGVLYGEVDAPLAWA
ITFKKILTKIGFKQSLIDPCLYIMQDKKMTLEVLMMVHVDDCKITGSREKVMWIKKEIKKHVPIKDLGELRKFLGVNYKA
GTDKIGPYIGVDMTEYVEEIIRDYE
>Copia_CoDi6.5 
AVNEIMNFISRGSWKKVPRSQARKSGKTILPTKWVFKKKDEQDGTTRYKSRIVTKGFMQIPGVDYSESFSPVANDTSVRI
GIAKTLANNDWVIEVIDIEAAFLEGQLDRDTYIEWPEGMVKLGFITADESERACIQLTKSMYGNVDAARRFYIEYKKHLT
GVPMGMESSEVDPCVFYRKRGNKVCLVAMTHVDDTILFGPKQEIEWFKVGVKKRFNYSDLGKLKKHLGVWYEWKENNSEE
RHLIGSMPKLVKEIIESFE
>Copia_CoDi6.6 
MNKELQQLHDKGTYEIVAKDTVQGKIIPTTWVFKRKRLPDGTIYKYKARLCIRGDLQAPQLDRNDTYAPVASWDTIRLMF
SLCVQHGIKSRQIDFANAFVQADRDEPIYLSLPPGFSQTSSTHCMKVTKSLYGDARAPRMWYDHLTTALVALGFTPSPID
PCLFLRKDCIFLFWVDDAIICSHDDSTIVSVIDDLRQRNFNIDNDTGVGSMENYLGIKLAPDNSISGSIHLTQPHLISRI
VDSTC
>Copia_CoDi6.7 
MQEEVQAHTENKLWELYPRRLVPQGTPIIPAVWSMKRKRRISTREVYKWKARLAFDGSKQIHGVNFWETYAPVASWPTIR
YILTLALINRWHMQQIDFVLAYTQAEAECEMFMKIPKGFTVEHDNSEEYVLRIKKNYYGLKQAGRVWNQHLVSKLQECGF
KQSEHDQCLFYRGRSVYVLYTDDSILAGPDLEELEQIKIDMANSGLKLTSEPGVSDFLGVKIDRKGDEIHLTQPHLINSI
LDDLR
>Copia_CoDi7.1 
IKLEITSLIDLECFEFKPSDFSPGNEFQKTTLMTVFDVKQDLRRKARLVAGGHLVDALDHDIYSSTVKGISVKLLHVIAH
KANLKQLCGDVANAYVNAYTNEKVYAKAGPEFGSDLVGSIVIIRKALYGLRSSSERWHAHFADTLRALQFKQSRYDKDVW
IRLGNESLFYEYVCTHVDDFMIVSKTPEKIMESIKAIYSVKSVGPPDYYLGNDYKKDRKGRWCIGCKKYLVEAIKRVE
>Caulimovirus_ComYMV 
LLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKGKERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDL
KSGFWQVAMEEESVPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFKGTEKFIAVYIDDILVFSETAEQHSQHLYT
MLQLCKENGLILSPTKMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDEKLATPEGMRSWLGILSYARNYIQDIG
>Gypsy_CRM 
LDKGYVRESLSPCAVPVILVPKKDGTWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGAIVFSKVDLRSGYHQIRMKLG
DEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGKFVVVYFDDILIYSKSMDEHVDHMRAVFNALRDARLF
GNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHGWPMPKTITQVRSFLGLAGFYRRFVKDFS
>Gypsy_CsRN1 
LELDIIRTSSSHWSSPLHMVPKKSKGDWRPCGDYRSLNNATIPDRYPIPHIHDFASTSCHTNIFSKLDLVRAYYHIPIAP
DDIPKTAIATPFGLFEFTRMPFDLRNAAQTFQRFMDEVLRGLPFVYAYLDDVLIASTSPMEHAAHLRAVFERLSTYNIRL
NIDKCLFGATNLDFLGHHIDSTGISPLPDRILALESFPIPTTLTQLRRFIGIINYYRRFIPHCA
>Caulimovirus_CSSV 
LLDIGVIRPSKSKHRTTAFIVESGTVIDPVTKKTIHGKERLVFNYKRLNDNTEKDQYSLPGIQTILKRVGNKKVFSKFDL
KSGFHQVAMAEESIPWTAFWVPQGLYEWLVMPFGLKNAPAVFQRKMDQCFKGTEEFIAVYIDDILVFSENMAEHTKHIGI
MLKICQENGLVLSPSKICLAQREIEFLGTVISQGQMKLQAHVIKKIVNKANIELETTKGLRSFLGLLNYARIYIPNLG
>BEL_Cubel 
EQKGYIRKLTDAEERADRDRVWYLPIFVVTNPNKPGKLRIVWDAAAEVRGISLNSVLLKGPDQVTSLVDVLLRFREYRTA
VTGDIKEMFHQVRVHLDDQHCQRFLWNNGAPGSTPSVYVMQVMTFGASCSPSCAQFVKNINAERFAEDSPAAAKAIINDH
YVDDMLSSVETEQEAIKLASSVRDIHGQGGFEIRGWRSNSKAVLAALNSQECEDKNLSEASQFSTEKVLGMWWDSSTDTF
TFRLPTKPDKDLLNGLRVPTKKEVVRVLMSIFDPLGLLANVLMFLKVLIQEIW
>Gypsy_Cyclops2 
LDARMIYPISDSPWVSPVHVVPKKGGNTVIRNDKDELIPTKVATGWRMCIEYRRLNTATRKDHFPLPFMDQMLERLSGQQ
YYCFLDGYSGYNQIAVDPADHKTAFTCPFGVFAYRKMSFGLCNAPTTFQRCVQAIFADLNEKTMEVFMDDFSVFGVSFSL
CLANLKTVLERCVKTNLVLNWKCHFMVTEGIVLGHKVSSRGLEVDRAKVEVIEKLPPPVNVKGIRSFLGHVGFYRHFIKE
FS
>Caulimovirus_CYMV 
LLKIGAIRPSKSRHRTTAIIVNSGTSIDPITGKEVKGKERMVFNYKRLNDLTNKDQYSLPGIQTILQRLKGSTIFSKFDL
KSGFQQVAMHPDSVEWTAFWVPSGLYEWLVMPFGLKNAPAVFQRKMDHCFKGTEAFIAVYIDDILVFSKTEKEHEEHLQI
MLSICQRNGLILSPTKMKIAQAEIEFLGAIIHNGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLNYARSYIPHMG
>Gypsy_Dane-1 
LRKGFIRPSSSPTASPVLFVKKPGGGLCFCVDYQRLNWILVKDQYPLPLVKETLNNLKGMRYFTKIDIISAFNNIRIKKG
QEYLTAFRTCLGLYESLVMPFGLTGAPATFQHYINDTLRDYLDIFCTAYLDNILIYSQTRSEHIQHVRKVLQKLREAGLF
AKLVKYEFTVHETKFLGLIVARDRIKIDPEKVQTIAAWATPTCITDIQAFIRFANFYRRFIKDFS
>Caulimovirus_DBV 
LLKLKVIRASKSRHRTTAFIVYSGTTVDPVTGKENKGKERMVFNYKRLNDNTEKDQYSLPGINTILKRVGQSKIYSKFDL
KSGFHQVAMAPQSVEWTAFLAPGGLYEWLVMPFGLKNAPAVFQRKMDNVFRGTEEFIAVYIDDILVFSETEEEHLKHLRI
LLQICQQHGLVLSPTKMKIGTKTIEFLGAVIGNRKIKLQEHIIKKIADFSDDELKTTKGLRSWLGILNYARAYMPNMG
>Gypsy_Del 
LNKGFIRGSTSPWGAHVLFDPKKDDSKRMCIDYKLNSVTVKNKYPLPRIDDLFDQLNGAYFSKIDLRFRYHQLRIRADIP
KTAFRTRYGHYEFLVMPFGLTNVPTAFMNLMNRVFREYLDKFIVVFVDYVLIYSRTQKDHEHHLRISLQLLRNNQLYAKL
SKCEFWMEKVKFLGHVVSREGIVVDPVKVKAVMNWELPKNIFEIRSFLGLAGYYRRFIKGFA
>Gypsy_Diaspora 
LQAGIIYPISDSQWVSPVQVVPKKTGLTVIKNEKEELIPTRVQNNWRVCIHYRRLNQVTKKDHFPLPFIDQILECLAGKS
HYCFLDGFSGYMQITIALEDQEKTTFTCLFGTFAYRRMSFGLCNAPGTFQRCMISIFSDFLENCIEEFMDDFTVYGSSFD
GCLDSLEKVLNRRIETNLVLNFEKCHFMVEQGIVLGHIISNKGIEVDPAKISVISQLPYPSCVEVRSFLGHAGFYRCFIR
DFS
>Retrovirus_DrFV1 
KRKGIIKEVDNAPTNSPIQAVAKPDGGWRLVTNYKALNKQTVPDTRYLINARDATGAAPEGRLLSKIDLANGFWSVPLKP
ESRARTAFTFENKQYVYNVLPQGFKNSPNAFQAIMMEILKGLPVVVYIDDILIVTNDEEEHLKILDETLSRLTKEGFRLN
YKKMEIAKDDVEFLGFQITGNERFLSQTTENKELRGKEITSLKQLQSMLGTLNFVRDLIPGYA
>Gypsy_DRM 
LDRLEKAGIITPVKYSEWAAPIVPVVKKDKTLRLCGDYKLTVNQAVTTEIYPLPRIEELMATLSGGTIFSKIDLASAYQQ
VLLEDESKELLTINTHRGLFVYNRLPFGVSSAPSIFQRIMENLMRDLDVIVYLDDLLVTGKTEQEHLQRLQAVLKRLQEN
GLRVKKSKCEFGKSQIEYLGFVLNSQGLHPSPDKVDAVKNAPVPTCVKELKAFLGLVNYYGRFLPNQS
>Caulimovirus_DrMV 
VQRLLQQNISDDPLKFWAKNKVTCQLEIINPDLTIQDKPLKHVTPLMEQQFKRHVEALLQLKVIRPSKSRHRTMAMIGNS
GTSVDPTTGKEVKGKERMVFNYRSLNDNTHKDQYSLPGINTIIQKIGRATVYSKFDLKSGFHQVAMSPESIEWTAFIVLG
GLYEWLVMPFGLKNAPAVFQRKMDHCFAGTEKFIAVYIDDILIFSANDEEHVEHLKVFCAIVEKHGLILSSNKMQLGKRE
IDFLGATLGNRKIKLQAHIIKKIAAFPEAQLAEKKGLRSWLGILNYARSYIPRLGILLGPLYQKTSPHGDKRM
>Retrovirus_EFV 
LKQGVLKQQTSPMNTPVYPVPKPDGRWRMVLDYRAVNKVTPAIATQNCHSASLLNTLYRGQYKTTLDLANGFWAHPIQES
DQWITSFTWNGKSYVWTTLPQGFLNSPALFTADVVDLLKDIPNVEVYVDDVYFSNDTEEEHLKTMDLLFQKLQTAGYIVS
LKKSKLGQHTVDFLGFQITQTGRGLTDSYKSKLLDITPPNTLKQLQSILGLLNFARNFIPNYS
>Retrovirus_EIAV 
LSEGKISEASDNNPYNSPIFVIKKRSSKWRLLQDLRELNKTVQVGTEISRGLPHPGGLIKCKHMTVLDIGDAYFTIPLDP
EFRPYTAFTIPSINHQEPDKRYVWNCLPQGFVLSPYIYQKTLQEILQPFRERYPEVQLYQYMDDLFVGSNGSKKQHKELI
IELRAILLEKGFETPDDKLQEVPPYSWLGYQLCPENWKVQKMQLDMVKNPTLNDVQKLMGNITWMSSGVPGLT
>Copia_Endovir11 
MEEELEEFSRHQVWDLVPRPPQVNVIGTKWIFKNKFDEVGNITRNKARLVAQGYTQVEGLDFDETFAPVARLECIRFLLG
TACGMGFKLHQMDVKCAFLNGIIEEEVYVEQPKGFENLEFPEYVYKLKKALYGLKQAPRAWYERLTTFLIVQGYTRGSVD
KTLFVKNDVHGIIIIQIYVDDIVFGGTSDKLVKTFVKTMTTEFRMSMVGELKYFLGLQINQTDEGITISQSTYAQNLVKR
FG
>Caulimovirus_EVCV 
IEELLELACSENPLDPEKSKGLLTASIKLIDPNKIIRVKPIPYPPNIRQEFDIQIKELLAMNLIVPSKSPHMSPAFMVNK
GAEQRRGKMRMVVNYKALNDATIGDAHNIPNRDSLMALISGKRIFSSFDCKSGFWQVLLDKPSQELTAFTCPQGHYQWLV
MPFGLKQAPAIFQRHMQIALNEHSAYSCVYIDDILVFSENEKDHEIHVSKVLNRCINLGIILSKKKSQLFKETIDFLGIS
IDKGTHSPKPHILENIHNFPERFKDVNQCRKFLGIITYAMRYIPELSRKRMFLQDKLKKNVPWTW
>Retrovirus_FeLV 
LDQGILKPCQSPWNTPLLPVKKPGTEDYRPVQDLREVNKRVEDIHPTVPNPYNLLSTLPPSHPWYTVLDLKDAFFCLRLH
SESQLLFAFEWRDPEIGLSGQLTWTRLPQGFKNSPTLFDEALHSDLADFRVRYPALVLLQYVDDLLLAAATRTECLEGTK
ALLETLGNKGYRASAKKAQICLQEVTYLGYSLKDGQRWLTKARKEAILSIPVPKNSRQVREFLGTAGYCRLWIPGF
>Retrovirus_FFV 
LKQGVLIQKESTMNTPVYPVPKPNGRWRMVLDYRAVNKVTPLIAVQNQHSYGILGSLFKGRYKTTIDLSNGFWAHPIVPE
DYWITAFTWQGKQYCWTVLPQGFLNSPGLFTGDVVDLLQGIPNVEVYVDDVYISHDSEKEHLEYLDILFNRLKEAGYIIS
LKKSNIANSIVDFLGFQITNEGRGLTDTFKEKLENITAPTTLKQLQSILGLLNFARNFIPDFT
>Retrovirus_FIV 
EREGKVKRADPNNPWNTPVFAIKKKSGKWRMLIDFRELNKLTEKGAEVQLGLPHPAGLQMKKQITVLDIGDAYFTNPLDP
DYAPYTAFTLPRKNNAGPGRRFVWCSLPQGWILSPLIYQSTLDNIIQPFIRQNPQLDIYQYMDDIYIGSNLSKKEHKEKV
EELRKLLLWWGFETPEDKLQEEPPYKWMGYELHPLTWTIQQKQLEIPEKPTLNELQKLAGKINWASQTIPELS
>Caulimovirus_FMV 
LLDLGLIIPSKSQHMSPAFLVENEAERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQV
VLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNGADKFCMVYVDDIIVFSNSELDHYNHVYAVLKIVEK
YGIILSKKKANLFKEKINFLGLEIDKGTHCPQNHILENIHKFPDRLEDKKHLQRFLGVLTYAETYIPKLA
>Copia_Fourf 
VRSEMESIMSNGTWEVVDRPYGCQPIGCKWIFKKKLRPDGTIERYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRTLIA
VAASYGLIIHQMDVKTAFLNGELDEEIYMDQPEGFIADGQENKVCRLIKSLYGLKQAPKQWHEKFDNTLTAAGFVVNESD
TCVYYRYGGGESVMLCLYVDDILIFGSNLNVIEEVKNLLSSNFEMKDLGEADVILNIKLVRKADGGVTLLQSHYVEKVLS
RFG
>BEL_Gabel 
RRAAMKLTKDVLREWTGPVWYISHLIAPNPHSVTTPVRLVWNSSQKCRGVSLNDLLLKGPDVLNSIRAVLLKFRRGGFAA
LGDVKKMYNSVWLEDQEVHLHRFLWRDSEEEELAEYAVTRVNIGDKPAGCIAQLAMRETANLPQFSHLEEERRVLQEDSY
VDDLLTSHDNLDQLKVITGNVEQILKAGGFELKPWVFTGQSRRESSGNDQAVTPRTVILPNQLKEEDNKALGLGYTLEDD
KLHVMVGINFSRRKRKMRLGQDLRLEQVRAQTPDPLTQRELLSQVSGLYDPIGLTTPVKQKGAILVRRAF
>Gypsy_Galadriel 
LDAGLIQPSKAPYGAPVLFQKKQDGTMRMCVDYRALNKATIKNKYSVPLVQDLMDRLSKACWFTKLDLRAGYWQVRIAEG
DEPKTTCVTRYGSYEFLVMPFGLTNAPATFCNLMNNVLFDYLDDFVVVYLDDIVIYSRTLEEHVNHLSLVLSQLRKYTLY
VKMEKCEFAQQEIKFLGHLVSKNQVRMDPKKVQAIVDWQAPRHVKDLRSFLGLANYYRKFIAGYS
>Copia_GalEa1 
KEKEITNWKDNKVYKEVEDVGQRALSVRWVVTEKVKDGQTVVKARLVARGFEEETGNLRKDSPTCSKEAVRLALSVAATC
GWVCYSLDVKAAYLQGDQIDRDVYLCPPPEFNDGSLWKLKRTVYGLCDAARHWYLRVRSQLLDLGAIASSLDPVLFSWRC
GRNLEGVICVYVDDLIWAGTNSFKEQVIDRLSQIFRMGNSESKAFKYVGLNIVSYSDGSITLDQNQYAATLTPIS
>Retrovirus_GALV 
LDLGVLVPCRSPWNTPLLPVKKPGTNDYRPVQDLREINKRVQDIHPTVPNPYNLLSSLPPSYTWYSVLDLKDAFFCLRLH
PNSQPLFAFEWKDPEKGNTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRALNPQVVLLQYVDDLLVAAPTYEDCKKGTQ
KLLQELSKLGYRVSAKKAQLCQREVTYLGYLLKEGKRWLTPARKATVMKIPVPTTPRQVREFLGTAGFCRLWIPGFA
>Gypsy_Gimli 
LESGIIQPSSSSFASPVVLVKKKDGSWRLCVDYRKVNGITVKNCFPIPLIEDLMDELGGAVIFSKFDLRAGYHQVRMVEK
DIPKTAFKTHSGHFEYLVMPFGLTNALATFQGLMNSVFQKFLRKFVLVFFDDILIYSKSKKEHLQHLKLVLEVMREHKLF
AKRSNCAFATSRVEYLGHFIDRDGLSTDPSKVLAVKEWPAPTNLKQLRGFLGLANYYRRFVKNFG
>Gypsy_Gloin 
LQCGIIRPSKSPFSSLVLLVKKKDGSWRFCVDYRALNRVTVLDKFPIPMIDELLDELHGTTIFSKLDLCLGYHQIRMRED
DIEKTAFRTHDGHFEFLVMPFGLTNAPASFQSLMNELFGPFLGKFVLVFFDDILIYSNNLTNHVKHLTLVMEVLAKHQLF
ANRKKCLLRQSQIDYLGHVISAHGVATDPSKTEAMIHWPTPKSVKELFGFLGYYRHFVKGYG
>Gypsy_Gmr1 
LKLGVIEESRSAWASPIVLVPKPDGTHRFCNDFRRLNEVSDFDSYPMPRVDELIERLGPARYLSTLDLTKGYWQVPLAPS
SREKTAFATPGGLFQYTVLPFGVHGAPATFQRMMDQVLRPHSSYAAAYIDDIIIHSASWDEHVKHVRAVLNGLRAAGLTA
NPAKCRLGREETAYLGYRVGRGNVRPQEDKVAAIREWPQPQTKKQVRSFLGLVGYYQRFIPGYA
>Gypsy_rGmr1 
LKLGVIEPSRSPWSSPIVMVPKPDGTLRFCNDFRKLNEASSFDGYPMPRVDELLDRLGSARFISTLDLTKGYWQVPLAPG
AKEKTAFTTPSGHWHYRVLPFGLHGAPATFQRMMDILLRPHQSYAAAYLDDVVVHSMCWEEHLTRLRRVLLELRRAGLTA
NPKKCHLGLAEAKYLGYHIGRGLIQPQQAKVEALQKTPRPTNKSQVRAFLGLAGYYRCFIPNFS
>Gypsy_Grande1-4 
VAAGFIREVLHPEWLPTLFLYSKRIKWIGACASTILISTNTVRRDPFGLPRIDQVVDSTAGCSMLSFLDCYSWYHQISLA
KEDEEKTAFITPFGAFCYTSMSFGLKNGRATYQRAIQTCLANHWGKRVEAYVDDVVIKIENSENFIEDLQLVFNSLRRYR
WKLNPEKCVFGVPAGKLLGFIVSHRGIEANPDKIEAIMKMEAPRSQKKVQRLTGCMAALSRFISRLG
>Gypsy_Grasshopper 
MDKGWIRASSSSAAAPVLMVRKASGGWRLCVDYRALNSITMQDRYPLPLIKETIRSLTGARWFTKVDVRAAFHKLRIAEG
DEHLTAFRTRFGLFEWLVCPFGLAGAPATFQRYVNGVLGDTLGDYASAYLDDILIYSSGSKSDHWSKVTRVLDKLAAAGL
NLDLDKSAFAVKEVKYLGFIVKAGEGVQADPEKIKAIRDWEAPTRLRGLRGFLGFANFYRDFIDGYA
>Gypsy_G-Rhodo 
YSHGLARDSLSEYASPVTLAPKPDGTWRFCTDYRALNSITQEAKFPLPRIDDSLDQLRGARYFSKIDLRSGYWQVRIEEK
DIHKTAFRTPFGHHEWLVMPFGLQGAPSTFQRMMNHYLRQYLGDFVICYLDDVLIYSKTKEDHLEHIRKVLEILRKHKLY
AKASKCDFGRTQVQYLGFIVRQGQVDKDPKKIEAIRDWPLPSTVREVRSFLGLAGFYRKFVEGFA
>Gypsy_Gulliver 
LERLYMNVISPVSYSVATPLVFIKKADGKLRVCGDFSTGLNKALQDHLYPLPIPEDLFTILNGCVVFSKIDFSDAYFQVE
VAEESRLLLTVNTHRGLFQYNRLPFGVKCAPAIFQQIMDTMLADLPFSMAYMDDIIVTSKNEKEHYAHSQKVFRRLSEYG
FCMKLEKCSFFMSSIKYLGIIIDLNGGRPNPEKVNAVVHMSIPSNVQKPSILGMINYYNSLCLTCT
>Gypsy_Gypsyvir 
LDDGIIRPSRSPYNSPTWVVDKKGTDSYGNPKKRLVIDFRKLNEKTIPDRYPMPRIPMILANLGKAKYFTTLDLKSGYHQ
IYLAEHDREKTSFSVSSGKYEFCRLPFGLRNASSIFQRAIDDILREHIGKICFVYVDDVIIFSKNETEHLQHINIVLKCL
IDANMRVGPEKTRFFKESIEFLGFIVTKDGATSDPKKVKAIQEFPEPKNVYSVRSFLGLANYYRVFIKDGA
>Retrovirus_HERV-E 
RTFRIIVPCQSPWNTPLLPVPKPGTKDYRPVQDLRLVNQATVTLHPTVPNLYTLLGLLPAEDSWFTCLDLKDAFFSIRLA
PERQKLFAFQWEDPESGVTTQYTWTQLPQRFKNSPTIFGEALARDLQKFPTRDLGCVLLQYVDDLLLGHPTAVGWPREQM
LYSGTWRTVGIRCPRKKAQICRQQVCYLGFTIQQGEHSLGSERKQVICNLPEPKTRRQVREFLGAVGFCRLWIPNF
>Retrovirus_HIV-2 
EKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAYFSIPLH
EDFRPYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANKDVIIIQYMDDILIASDRTDLEHDRV
VLQLKELLNGLGFSTPDEKFQKDPPIHWMGYELWPTKWKLQKIQLPQKEIWTVNDIQKLVGVLNWAAQLYPGIK
>Gypsy_HMS-Beagle 
LHDGIIRPSRSPYNSPVWIVPKKLDSSGKKKYRVVIDYRKLNMVTVADRYPIPDINEVLAQLGDNKIFSVLDLKSGFHQI
LLKESDIEKTAFSINNGKYEFTRLPFGLKNAPSIFQRALDDILHEHIGKICFIYIDDIIIFSKDDETHYQNLDTIFRTLQ
QANMKCQLDKCEFMKRKVEFLGFVVSDKGIETSPTKVQAISDFPIPRTLKELRSFLGLSGYYRRFIPNYA
>Copia_Hopscotch 
GDTSPGPHHDAAGSSAAPEVIAATEQGDINARPKTRLQSGIRKKKIYTDGTVKYGCFTSSGEPQNLAEALGDRNWKEAMD
KEYYALMKNETWHLVPPKKGINIIDCKWVYKIKRKADGSLDRYKGRLVAKGFKQRYGIDYEDTFSPVVKAATIRTVLSLV
ASKDTSLFFYDKNGVTMFMLVYVDDIIVSSSSEKATSALLQDLNQEFALKDLGDLHFFLGIEVKKVNDGLVLTQEKYASD
VLRRVG
>Retrovirus_HTLV-1 
LEAGHIEPYTGPGNNPVFPVKKANGTWRFIHDLRATNSLTIDLSSSSPGPPDLSSLPTTLAHLQTIDLKDAFFQIPLPKQ
FQPYFAFTVPQQCNYGPGTRYAWRVLPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMDDILLASPSHADLQLLSEA
TMASLISHGLPVSENKTQQTPGTIKFLGQIISPNHLTYDAVPKVPIRSRWALPELQALLGEIQWVSKGTPTLR
>Retrovirus_HTLV-2 
LEAGHIEPYSGPGNNPVFPVKKPNGKWRFIHDLRATNAITTTLTSPSPGPPDLTSLPTALPHLQTIDLTDAFFQIPLPKQ
YQPYFAFTIPQPCNYGPGTRYAWTVLPQGFKNSPTLFEQQLAAVLNPMRKMFPTSTIVQYMDDILLASPTNEELQQLSQL
TLQALTTHGLPISQEKTQQTPGQIRFLGQVISPNHITYESTPTIPIKSQWTLTELQVILGEIQWVSKGTPILR
>Copia_Humnum 
VQDELLSFEKNSAWELVDVPKDGTIVQCKWVLRKKYDSENKVHYRARLVAKGFTQKHGVDYTETFSPVVRHTTLRLLFAL
SVKLDLNVTHLDVKTAFLNGDLEETIYMKLPDCYNSSSSSDCKVLKLKKAIYGLKQASRAWNKKVDNCLVSNGYKRSKIE
PCMYVKDISKCKIIVTVYVDDFFIFSNDKVETENLKQILSNKFSIKDLGQVKQCLGMNVTFNREKGYVTLSQETYVDQLL
SKFQ
>Copia_Hydra1-1 
MDEEIQSLTNNDTFIITELPANKKVVGGRWIYTIKGNNNKIIYKARYVAKGYNQIQGIDYLETFSPTARMESVRILMQIS
AQYNLILHQMDVKSAYLHAPIEHEIYVNQPPGYEKTHNNKQLVWKLNKSLYGLKQSGRNWQNVLSDFLKEIQFIQSNADN
CVFVRRSNTEVAMILVWVDDIIIAANSNELLIKVKKKLSKRFKMKDLGPLTSFLGIQFKSTSNCVTMNQSDYLQNVLQKF
G
>Copia_Hydra1-2 
MEDEISSLQENNTFTLTTLPEGKHAVGGRWVYSIKSNIDETETYKARYVAKGYSQVLGVDYIETFSPTANITSIRALMQM
AAQYDLELHQMDVKTAYLHAPIDCKIYMEQPKGFEVKSNRGDKLVCKLNKSLYGLKQLGRNWNKILHVYLTENDLIQNLA
DYCVYSKRSGKDRVIIIIWVDDLIIAASDNSLLKDVKEMLTSKFKMKDLGKLKHFLGIDFDQSKGTVRVNQKRYILRILE
RFN
>Gypsy_Hydra2-1 
LDRLISSGIYRPVSHSRWAAPIVPVLKKDGTIRLCGDYKQTVNQAAMCDSYPLPRTEDLFATLAGGQKFTKLDLAFAYQQ
LLLDKSSCELLTVNTHRGLFEPTRLQFGVHSASGIFQREIEKLIGNLPFTKVRVDDILVSGRSDEEHLKNVETVLLILEK
AGLKLKENKCVFMSPEVEYLGFKLTKDGVVPLEDKLNAIRNAPEPKDTTQVKSFLGMINYYHRHLPNLA
>BEL_Hydra3-1 
SGVIEKVNNYDSSIGEVHYLPHRPVCRKDKTSTKVRIVFDASSTLSGPSLNDCINAGPSLATPLFFILLRFRANKYAFIA
DIEKAFLQIALDKNDRNYLRLIWFDDIYNINNSNLFSSALATYRICRVPFGVTSSPFLLNATLIYHAERYCLNDNNISSK
LLQSLHIDDLISSCVTIEEGILFFNKCKDILKEGGFNLRKFESNSSAFEKQINGDNYERQTNTRVLGLKWNKTEDSIIYS
FEDLLNVASIVPTKREVMSFIASIYDPIGLINPVVVTCKNLFQRIC
>Gypsy_Idefix 
IEQGIVRKSKSPYCSPIWVVPKKADASGKQKFRLVVDYRNLNEITVNDKFPIPRMDEILDKLGRCQYFTTIDLAKGFHQI
QMDENSIAKTAFSTKHGHYEYTRMPFGLKNAPATFQRCMNNLLEDLIYKDCLVYLDDIIVYSTPLEEHILSLKKVFEKLR
DANLKLQLDKCEFMKKETEFLGHIVTTNGIKPNPNKTKAITNFPLPKTPKQIKSFLGLCGFYRKFIPNFA
>Gypsy_Ifg7 
LEAGIIQPSQSSFSDPVVLVHKKDGSWCMCPDYRELNKLTIKDKFPIPVIDELLDELHGSIYFTKLDLRSGYHQIRMKTE
DIPKTTFRTHEGHYEFFVMPFGLTNTPSTFQGLMNSIFKPFLRKFVLVFFDDILIYNKSWKDHVEHVDRVLQLLEEKKLY
AKRSKCFFVVQEVEYLGHIVSEGVKVYPNKIKAIKEWKIPTSIKHLRGFLGLTGCYRKFAKNYG
>Retrovirus_JSRV 
LRLGHIEPSTSAWNSPIFVIKKKSGKWRLLQDLRKVNETMMMHMGALQPGLPTPSAIPDKSYIIVIDLKDCFYTIPLAPQ
DCKRFAFSLPSVNFKEPMQRYQWRVLPQGMTNSPTLCQKFVATAIAPVRQRFPQLYLVHYMDDILLAHTDEHLLYQAFSI
LKQHLSLNGLVIADEKIQTHFPYNYLGFSLYPRVYNTQLVKLQTDHLKTLNDFQKLLGDINWIRPYLKLPT
>Gypsy_Kabuki 
QELGICRPSKIAWASPLHIVPKKNGDLRPCGDYRQLNAITKPDRYPIPRRHDFTYILDDKKIFSKLDINRAFHCIDVAPE
DIEKTAIITPFGLFEFPKMTFGLRNAPQTFQRFMNNTVLHGLEFLFSYLDDVIIASESPTQHNEHLRIVFERFNSYGITI
NLDKCCFGQPKVEFLGHEVSVNGITPLKNKVEAIINFPKPETVSDLRRFLGMVNFYRPHLPNSA
>Copia_Koala 
MDEEYQALVTNKTWHLVPPNKNIIDCKWVYKVKRKQDGTLDRYKARLVAKGFRQRYGIDYEDTFSPVIKMTTIRIILAIA
VSKGWFLRQLDVKNAFLHGILEEEVYMYQPPGYEDKQHPNYVCKLDKALYGLKQAPRAWFARLSHKLNQLGFQESKADTS
LFFYNREGLTVFLLIYVDDIIVVSSKSEAIPILLQNLQQDFALKDLGNLHYFLGIEVNQSPNGIVLTQAKYANDLLRRSG
>BEL_Kobel 
NGYAEKVPDGVTAKKGKEWYIPHHGVYHPRKPNKIRVVFDCAAKCDGTSLNDVLLPGPNLMNDLKGVLMRFREFPVAFAS
DIECMFYQVKVPESQRDLLRFLWLPKGDLDQKPKVYRMAVHLFGAVSAPSCANYSLRRTGIDNICNAREETVNTLHNNFY
MDDGLKSVENVEQAIQLVKELKALCKEGGFNLTKWSSNEREVLREIPLDDRAKELMDLDLESSQLPTERTLGVLWNAETD
EFQFKCQIKKTEVTRRSMLSEVSSIYDPLGFIAPLLIPAKSVLQEMC
>Copia_Koco 
IKTELNAHDINNTWTIMQKPENKNIVDSRWVFSVKYDELGAPIKYKARLVARGFTQKYQVDYDETFAPVARIASFRLLLS
LAVQYNLKVHHMDVKTAFLNGTLKEEIYMQPPQGVACNVGYVCKLNKAIYGLKQAARCWFQVFEQALKECSFVNSPVDRC
IYILEKGDIKKNIYVLLYVDDVVIATGDMEGMINFKSFLNKKFRMTDLDEIRHFIGIRIETYEDKICLSQAAYVERILNK
FN
>Retrovirus_KoRV 
LDLGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVQDIHPTVPNPYNLLSSLPPSHTWYSVLDLKDAFFCLKLH
PNSQPLFAFEWRDPEKGNTGQLTWTRLPQGFKNSPTLFDEALHRDLASFRALNPQVVMLQYVDDLLVAAPTYRDCKEGTR
RLLQELSKLGYRVSAKKAQLCREEVTYLGYLLKGGKRWLTPARKATVMKIPTPTTPRQVREFLGTAGFCRLWIPGFA
>Caulimovirus_KTSV 
LLQSKVIRPSTSKHRTTAIIVESGTEVDPITGKEKRGKERLVFNYKRLNDNTEKDQYSLPGINTIIKRIGTSKVYSKFDL
KSGFHQVAMAEESIPWTAFWAIDGLYEWLVMPFGLKNAPAIFQRKMDECFRGMEEFIAVYVDDILIFSNSVQDHKRHLQR
FFEVCTKEGLVLSPTKMKIGVREVDFLGATIGNSKIKLQPHIITKIIDMRDEEIKETRGLRKWLGILNYARSYIPRLG
>Gypsy_Legolas 
LDKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPT
DVRKTAFRTRYDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLREHELF
AKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFA
>Caulimovirus_LLDAV 
LLELKIIIPSKSPHQSPAFLVENEAERRRGKKRMVVNYKAINTATIGDAHNLPNKDELLTLIRGKSIFSSFDCKSGFWQV
LLDEDSQLLTAFTCPQGHYQWIVVPFGLKQAPSIFQRHMNNAFRDFASYCCVYVDDILVFSNNIKDHYAHVAQVLRKCAE
LGIILSKKKAQLFKCRINFLGLDIDEGTHRPQNHILEHIHKFPNKIEDKKQLQRFLGILTYASDYIPQLA
>Retrovirus_LPDV 
LKDGRIIPSRSQWNSPIFVIQKKDKSKFRMLHDLRAVNALIKDWGALQPGTPWPGAIPSEWPVIAMDISDCFFSIPLAER
DSERFAFTIPSPNLREPAKRYQWTVLPQGMKNSPYICQQVVAEVIRPIRERFRDAVIIHYMDDILIAAAEERQTEVIFEA
VKTTCHEKGLKINEAKTQRAPEVSYLGWRVMETGIAPLTVQLPETVTNLVQLQRLLGIIQWLKPILSLRP
>BEL_Mabel 
SNIIEKVSSEMNEVGIIHYLPHHEVITPNKTTTNLRIVYDASAHCKGMKSLNDVLYRGPITLPDLVGVLLRFRTMKNVII
ADVEKAFLQIELHPTDRNCTRFLWLKDIRSPVNEENVSCYRFQRVPFGIVSSPFLLSATLNYHLETCKSKIALELRKNLY
VDNIIIPTKGTNEALSNYKEIKIIFNEASMNVREFLSNDQEVNEKLPVQDRAEVSSIKKILGLNWYHKQDIIQVTLKPWF
GKKLTKRIILQFVASQYDPLGFIVPILIRFKLFLQTLW
>Gypsy_Mag 
LAAGVIKPVDHSDWATPLVVVRKADGGLRICADYKVTLNKVLAIDRFPVPKMEDLFSNLSGNKFFTKLDLSQAYNQIVLS
ERSSEYTVINTHRGLFKYSRLVYGLASSPGIFQKLMVNMFKNVPNVVVFYDDILIRNQDLDSHLKSIKEVLDILERYGLK
IKRSKCEFMVTEVRYLGFIIDQNGVRVDPEKVKSIATMPHPNNVTELKSFIGMVNFYSKFIQDLA
>Gypsy_Maggy 
LKKGFIRPSSSSVASPVLFVKKQGGGLRFCVDYRALNNITVKDRYPLPLVRETLNNLAGMKFFSKIDIVSAFNNIRIKKG
EEYLTAFRTRFGLYESLVMPFGLTGAPATFQRYINDSLREYLDVFCTAYLDDILIYSRTRTEHEEHLKLVLEALRKAGLY
ANAAKCEFFVTETKFLGLLVGVEGVKMDPEKITAVLDWQTPKKLTDVQAFLGFGNFYRRFIRDFA
>Gypsy_marY1 
LASGRIRPSKSPMASPFFFVKKKDGSLRPVQDYRRLNNITVKNRYPLPLISELVNQLHGARYFTKLDVRWGYNNVRIKEG
DEWKAAFRTNRGLFELLVMFFGLTNSPATFQTMMNDIFHDLILEGVVCIYLDDILIFTRMVEEHRRITRLVLERLRRYKL
YLHQDKCEFERTKIEYLGLIISEGQVEMDPIKVNRVTAWPTPTNKKEVQSFLGFINFYRRFIKDFS
>BEL_Max 
LGHMKEVPPTHNSPSYHLPHHAVVKPESTTTKLRVVFNASSPSANGISLNDILHAGPVLQSDLTIQVLKWRYFQYVFSAD
ITKMYRQIWVDPKHTPFQRILFRNKEGDIRDFELKTVTFGVNCAPFLAIRVLQQLAEDIQVPFPNASRIIQQHMYVDDVL
AGANSVNEAQSSIRELQAALSASGFPLRKWTSNNKSVLKDVPAEHLLHSEFLDIDAESTAKTLGIRWRAKSDEFYFVPPD
IVVEASYTKREVLSQIARLFDPAGWLAPFIIRSKIFMQEIW
>Retrovirus_MdEV 
LDQGILVACQSPWNTPLLPVRKPGTNDYRPVQDLREVNKRVLDIHPTVPNPYNLLSSLPPERTWYTVLDLKDAFFCLRLH
PKSQLLFAFEWRDPEGGQTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRAQNPQLTLLQYVDDLLIAAASKELCQQGTE
RLLTELGNLGYRVSAKKAQICQTEVIYLGYTLRGGKRWLTEARKKTVMMIPPPTTPRQVREFLGTAGFCRLWIPGFA
>Gypsy_Mdg1 
IKDGIVEQSISEYNSPLLLVPKKSLPNSEEKRWRLVVDYRQINKKLLADKFPLPRIEDILDQLGRAKYFSCLDLMSGFHQ
IELDERSRNITSFSTSTGAYRYTRLPFGLKIAPNSFQRMMTLAFSGLTPSQAFLYMDDLVVIGCSEKHMLKNLTDVFKLC
RQHNLKLHPEKCTFFMKEVTYLGHKCTDKGILPDDSKYEVIKNYPKPVNADEARRFVAFCNYYRRFIKNFA
>Gypsy_Mdg3 
LENGFIRPSDSEYASPIVLVKKKTGDLRMCVDFRKLNKMTMKDNYPLPLIDDLLDRMNEKTVFTKLDLKNGFFHVHVKKE
SIKYTSFVTPLGQYEWLRMPFGLKNAPSVFQRFVNKIFADMIRENKVVVYMDDILLATENINEHLETLKEIFKRLVENKL
ELRIDKCEFMQSSIKYLGFIINKDGIMPNDKGIEAIKNFPIPNNVHTVQSFLGLCSYFRRFIKDFS
>Copia_Melmoth 
VDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLK
VSASKKWFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKK
THGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGISICQRKYALE
LLQSTG
>Gypsy_MGLR3 
LQKGFIEPGSTPWAAPILFARKGDGGLRFCVDYRKLNALTKKDVCPLPLIEETLARISKARFFTKIDIRQAFHRIRMNPE
HRDYTTFRTRYGTFRYNVLPFGLTNGPATFQKFINEILMEYLDDFCSAYMDDILIWSETEEEHQTHVRQVLERLKKAGLQ
ADIKKCEFHVTETRFLGFIIGTKGVAVDPDKVAAVKQWAPPTTVKGVQSFLGFCNFYRKFVPEYS
>Gypsy_Micropia 
IRCNIVRPSCSPFASPMLLVKKKNGTDRLCVDFRELNSNTISDKYPLPLISDQIARLRGANYFTCLDMASGFHQIPIHPE
SVEYTAFVPDGLKNAPSVFQRTVINALGDLANSFVIVYMDDIMVVSPTKELALERLKTVLNVLTKAGFTFNLAKCSFLKT
TVQYLGYEVRAGEIRPNVRKIASLSSLPPPQTVSGVRQFIGLASYFRKFVSGFA
>Caulimovirus_MiMV 
IEQLLEKVCSENPIDPEKSKGWMKAEIKLIKPETVVRVKPMVYSPEDRKEFEIQIKELLDLKVIIPSKSQHMSPAFLVEK
EAEKRRGKKRMVVNYKKLNEVTIGDSHNLPNMQELITLLRGKNIFSSFDCKSGFWQVLLDDESQKLTAFTCPQGHYQWRV
VPFGLKQAPSIFQRHMQDALRGLEEFSLVYVDDIIVFSDNKNDHQDHVMKVLRRIESLGIILSKKKANLFKEKINFLGLE
IDRGTHTPQNHILDHIHTFPDRIEDKKQLQRFLGVLTYADSYIPKLAEKRKPLQVKLKKDQVWIW
>Retrovirus_MMTV 
LQLGHLEESNSPWNTPVFVIKKKSGKWRLLQDLRAVNATMHDMGALQPGLPSPVAVPKGWEIIIIDLQDCFFNIKLHPED
CKRFAFSVPSPNFKRPYQRFQWKVLPQGMKNSPTLCQKFVDKAILTVRDKYQDSYIVHYMDDILLAHPSRSIVDEILTSM
IQALNKHGLVVSTEKIQKYDNLKYLGTHIQGDSVSYQKLQIRTDKLRTLNDFQKLLGNINWIRPFLKLTT
>Gypsy_Monkey 
LSGGLIRSSKAPFGAPVLFQKKQDGSLRLCVDYRALNKVTVKNKYPIPLIADLFDQLGKAKYFSKLDLRSGYWQVCIAEG
DEAKITCVTRYGAFEFLVMPFGLTNAPATFCTLMNQLFKEYLDKFVVVYLDDIVVYSQTLEEHVKHLWMIFKVLRENTLF
VKREKCYFAQTEILFLGHRIGDGSIWMDKSKVQVVAEWRTPKKVPELRSFLGFVNYYRRFIAGYS
>BEL_Moose 
IQLGHMVPVSPDNLDAATCCYLPHHPVFKETSSTTKMRVVFDGSAPTSTGHSLNDALLVGPVIQDDLLSLIIRFRKFQVA
LVPDLEKMYRQVLVHPEDRPLQRYGGAYELRTVTYGLAPSSFLATRTLQQLAEDEGDAFPTAKDTLKKQLYMDDLIAGSN
SVDGAIQLREELSALAQRGGFTFRKWCSNSLAVLSDVPAEQLATKSSLRFDDKETISTLGICWEPEIDTFQFNISITTKS
ERDTMRTILSMIAELYDPLGLISPVIITAKVLMQSLW
>Retrovirus_MPMV 
LEAGHITESSSPWNTPIFVIKKKSGKWRLLQDLRAVNATMVLMGALQPGLPSPVAIPQGYLKIIIDLKDCFFSIPLHPSD
QKRFAFSLPSTNFKEPMQRFQWKVLPQGMANSPTLCQKYVATAIHKVRHAWKQMYIIHYMDDILIAGKDGQQVLQCFDQL
KQELTAAGLHIAPEKVQLQDPYTYLGFELNGPKITNQKAVIRKDKLQTLNDFQKLLGDINWLRPYLKLTT
>Copia_Mtanga 
MEEEIKSLHENATWEIASLPKDRKAVGSKWVFKRKMDGDGKIVQYKARLVAKGFSQVYGADYDEVFAPVAKQTTFRTLLS
IAARRKLIVKHVDVKSAYLYGDLAETIYMKQPTGFEIGSKNDVCLLKKSLYGLKQAGRVWNQTITEVLRSLGFHSSEADP
CLFVKNKRDRWSFILLYVDDMLVACSEDREYEDIENTLKRHFKITTLGDVRNYLGIRIERGQNGEYLLDQASYIRRIAKR
FG
>Retrovirus_MuERVL 
KDAGVVVPTTSPFNSPIWPVQKTDGSWRMTVDYRKLNQVVTPIAAAVPDVVSLLEQINTSPGTWYAAIDLANAFFSVPVH
KDHQKQIAFSWQGQQYTFTVLPQVYINSPALCHNLVRRDLDRLDLPQSITLVHYIDDIMLVGPSEQEVATTLDSLVTHMR
IRGWEINPTKIQGPSTSVKFLGVQWCGACRDIPSKVKDKLLHLAPPTTKKEAQRLVGLFGFWRQHIPHLG
>BEL_Nabel 
TKVIEEYLKLGHGFYLPHHGVPKLDSLTTMLRVVFNASVTPSDGGCSLNDCLLVGPTIQDDLITLLLRFRTHTYVILADI
EKMYRQFLVRDSDRKYQKILWFVNDEIREFVLNTVTFGVAAAPFLAIRCLHQLADDEQERFPLAAKILKRDMYVDNMLTG
TNSVEEARSICTQMTQVLRTAGMNMRQWAANDPNILSDIESKNLDANFDLSNDNTLKTLGIRWRAKTDSFVYKIKPISVT
ERFTKRKILSEIAKIFDPLGLLGPIILFAKKIMQDIW
>BEL_Ninja 
VSKGYARRLQPEEVAVRSDRLWYLPHFSVENPNKPGKVRLVFDAAAKVGGTSLNSELDKGPQHYKPLPAVLFHFREGAVG
VCGDIKEMFHQVLIRPEDRCSQRFLWRDGDDERDPDVYEMNVMTFGAACSPSAAHYVKTMNALKYRDSDPRAVKAITDYH
YVDDYVDSFATESEAISVSTRVKEIHKDAGFELCQFSSSSPTVETALGPGRVKSVGWGEAEEKILGMRWQVATDDFRFNV
EYHRVPSSVLSGDRVPTKREYLSLVMSTFDPLGFLCCLMVTAKLLLREIW
>Gypsy_Nomad 
LQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQI
HMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLS
KANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYA
>Gypsy_Ogre 
WDAGFLAVTSYPPWMANIVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPHIDVLVDNTAQSSVFSFMDGFSGYNQIKMAP
EDMEKTTFITPWGTFCYKVMPFGLKNAGATYQRAMTTLFHDMMHKEIEVYVDDMIAKSQTEEEHLVNLQKLFDRLRKFKL
RLNPNKCTFGVRSGKLLGFIVSEKGIEVDPAKVKAIQEMPEPKTEKQVRGFLGRLNYIARFISHLT
>Copia_Olco1 
KVKEIKNWRDNDVFVEVQDEGQKYISTRWVCTLKETHTGLMPKARLVARGFEELQVSELQKDSPTCASESLRLLVAVICQ
RQWSLNSMDIKAAFLQGAELSRDLYIRPPPEADSKGTLWKLKKCVYGLADASLYWYNRVKEIMQTLGGKVSKVDPAVFYW
LDEKNTVIGVLACHVDDFIWGGTQSFSTTVIPELRSAFQVGLEQHGSFCYVGIDFVSLKEKIQLHQENYIQHLQPIM
>Copia_Opie2 
MQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLG
VACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGID
KTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKK
FG
>Copia_Oryco1-1 
MEDEIHMIEKNNTWELVDRPRDREVIGVKWVYKTKLNLDGSVQKYKARLVAKGFKQKPGIDYYETYAPVARLETIRTIIA
LAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENKVFRLKKALYGLKQAPRVWYSQIDKYFIQKGFAKSISE
PTLYVNKTGTDILIVSLYVDDLIYTGNSEKMMQDFKKDMMHTYEMSDLGLLYYFLGMEVHQSDEGIFISQRKYAENILKK
FK
>Copia_Oryco1-2 
MQDELDAIVDNDTWSLTDLPHGHRAIGLKWVYKLKRDEQGAIVRYKARLAAKGYVQRQGGGLRRGLHTCRPAGIDWQVHH
MDVKSAFLNGKLLEEVYVSQPPGFVDDNHKNKVYRLHKALYGLRQAPRAWNAKLDSSLLSFGFHRSSSEHGVYTRTRGGR
RLTVGVYVNDLIITGDHDDEIRSFKGEMMKLFKMSDLGHSDTTSASRLPWTVMGSRWGKLHMPARFLRGQD
>Copia_Osser 
MDEELASIRANEVWRLEIPPKSVRPLPVKWVFSLKKDEHGEIVRYKARLVAKGFAQVEGRDYEEVWAPVSKHTTLRALLS
VAARDLELHQLDVKTAFLNGELEETVYIQQPPGYVEGEPYLACKLEKALYGLKQAPRAWYARLRSELEAMNFTVSQADPG
LFYRDVLGERVYLLVYVDDLLLIAAKDINIVRQLKDKLKSILMCVTWVRPVCFLGFEIERNRAERTMKVSQKRYAKGLVE
KYG
>Gypsy_Osvaldo 
LVKGCIEPSKSPHTRTYSNGQGRKNGKWRLCVDFRQLNSRSIKDAYPLPRVHHILDQLREARYITSLDLKDGYWQIPMEK
SSRPLTAFTVPGKGLFQWKVMPFGLHSAPATFQRALDQVIGPDMMPHAFAYLDDIIVIGRTRQEHMDNLREVFRRLRAAN
LRINIDKCDFFKKELKYLGHKVTENGIRTDPEKVAAIAQLKPPTNVKELRQYVGVASWYRRFVPDFA
>Copia_pCal 
MNAELEKFRSKDVYEEVPIPTGVKPISMGWVHTEKIDSLKGVVRKSRCVVHGNRQKEKLDYDPFSVSSPVIDLVTIRLLT
IIGCELGMTIQHLDVESAYLNASITHSNPIYVFPPKSVPLKKNHCWLLKRSVYGLKQSGLEWYHTIKRVLEDIGFTQVLH
NDGLFHIEYEEGSVIYLGLYVDDILMVGSSQKVIDNFVDQLRDHFEVKVFGEISNYLGIEFRKTESGYILSQEKFK
>Copia_pCretro3 
MDAEMAQLEANGTWKKGELPPGRKAIGSKWVFAIKRHQDGSIDKYKARLVAQGFSQIAGQDYFDTFSPVVRQETFRVATA
LAATENLDSDALDIVGAYLHGPLEEEIYMRQAPGYDDGSGQVYVLIKALYGLKQAGRVWNHLLNHVLTSLMGWTRSEADP
CLYFKHEGKLNMALVHVDDTALYGERSILDRFKADVAKHFAITTNGTLSSFVGLQVTRKNGAISILQTRYLETILERFG
>Copia_pCretro6 
MQREYDQLTKLGCWDLVDLPAGRKAIGCKWVYRIKRNFSGAIIKYKARLVAQGFSQVPGVDYDETYAPVMRPESLHILAA
IAVILNLEWDIENAVGAYLNSQLKLTIYMRQPEGFDDGSGRVCKLNLALYGLKQSGREWNLLLDEFLRGIGFRASSVDPC
VYLRIDEGSPTFLAVHVDDFSLFAKTREIMDKLKGELSSRFEMTDLGPVRQILGYEVIRERDQRTLMLRQAAYIRKVLDR
FN
>Caulimovirus_PCSV 
VTQLLEAICSQNPLDPQKNRNQIIVHIDLIDPTKEVNVPNRIPYTQKDIDEFREETSKQIELGILRQSKSPHSAPAFYVE
NHNEIKRGKRRLVINYKMNKATKGDAYNLDRLYLTDRESNWFSTLDAKSGFLQLRLDEETKPLTAFSCPPQMHLEYNVMP
MGLKQAPSQFQRFMDNNLRGLEDISLAYIDDIIVFTKGTKDYHLKQVARVLIQLGNHGVILSKEKAKIAFEEIEFLGLKI
LKNGFIEPQKHLLEKIAEFPDQLQDRKQIQKFLGCLNYIGEKGFFKELAKERKVLQKMLSEKLPWKW
>Gypsy_Peabody 
LDKKFIRPSVSPWGAPVLLVKKKEGTMRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLVGASVFSKIDLRSGYHQIRVKTE
DIQKTAFRTRYGHYEYSVMPSGVTNAPGVFMEYMNRIFHPYLDKFVVVFIDDILVYSKSEEEHVEHLRVVLGVLREKKLF
AKLSKCEFWLEEVSFLGHVISRGGVAVDPSKIEAVSKWEAPKSVAEIRSFLGLAGYYRKFIEGFS
>Retrovirus_PERV-MSL 
IQQGILVPVQSPWNTPLLPVRKPGTNDYRPVQDLREVNKRVQDIHPTVPNPYNLLCALPPQRSWYTVLDLKDAFFCLRLH
PTSQPLFAFEWRDPGTGRTGQLTWTRLPQGFKNSPTIFDEALHRDLANFRIQHPQVTLLQYVDDLLLAGATKQDCLEGTK
ALLLELSDLGYRASAKKAQICRREVTYLGYSLRDGQRWLTEARKKTVVQIPAPTTAKQMREFLGTAGFCRLWIPGFA
>Copia_Poco 
MNEELRMIEKNQTWKLVDMSEHKKPIGVKWVYRTKLNADGTINKHKARLVVKGYAQIFGVDFSETFAPVARLDTIRMLLA
VAAQKGWKIFQLDVKSAFLNGYLQEGIFVEQPKGFVVRGEEEKVYLLKKALYGLKQAPRAWSRIDEHLLKLDFKKSLSES
TLYIRNSNSDYIVVSLYVDDLFVTGNNQSMIDNFKAEMMKVFEMTDLGEMAYFLGMEVQQNQHGIFICQQKYAKEILKKF
K
>BEL_Purbel 
MGFAKKLEKDEMTMYKGPVHYISHHAVIRPDNKSTPLRIVFNSSAIYKGHCLNEYWKKGPDLLNNLFGVLLRFREHPVAI
CADISKMYHRILIPERDQHVHRFLWRDMNQEKEPDVYMMKVVTFGDKPAAAMAQIGVRLTAEEGEAKYPEAAAILKRNIY
MDDICDSVETEDTAKKRIAEVDELLEAGGFKVKGWQSNKPLDGGNKQEKMKLLEEIAEEKVLGVVWERHNDTFSYKVKLQ
ETDKETEKLTKRKILGKVARIYDPIGFAAPIIIKAKTGLQKLW
>Caulimovirus_PVCV 
LQQFDLIEPSDSQWACEAFYVNKRSEQVRGKLRLVINYQPLNHFLQDDKFPIPNKLTLFSHLSKAKLFSKFDLKSGFWQL
GIHPNERPKTGFCIPDRHFQWKVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLFSETLEDHIKLLNQFISLVKK
FGVMLSAKKMILAQNKIQFLGMDFADGTFSPAGHISLELQKFPDTNLSVKQIQQFLGIVNYIRDFIPEVT
>Retrovirus_PyERV 
LDNGHLEPSLSPYNTPVFVIKKKSGKWRLLHDLRAVNAIIKPMGALQCGLPNPNLIPQSYDMMIIDLKDCFFSIPLHPKD
KHIFAFTVPALNNSQPTSRYQWKVLPQGMLNSPTMCQYFVSQVLQPYRDKYSSFLVYHYMDGILVATPGPKGTVLKTLPH
LQRILQQGGLHIAPDKVQLSSPFHYLGHKVLESHANPCLPNIQLPPAPTLLQLQQYLGSINWIRPYIGLST
>Gypsy_Pyggy 
LDKGFIRVSSLLAFLLVLFAKKLEGGLRLCIDYWALNAITRGKNRYLLPLIRETLNNISKAKWFTKLDVIAAFYKIRVAE
GDEWKTAFRTRFSLYEWLVTPFGMANSLSTFQRYINWTLREYLDEFCSAYLDDVLIYTDGSLEQHQDHVRKVLRKLQESG
LNVDIKKCEFGVKSTKYLGLIIDAEKGIRMDPEKVKAIMEWEPLRLRAYVHFWDSQTSTGDLSRDFS
>Copia_PyRE1G1 
LEDERQSMITHKVWTKKKAPPGARRQGTRVIFECKADQRGVLQRRKCRLVGRGDRQKPGNDYLQSWAAMPAAATTRAFFA
TAAARGWTVHHIDVKTAYLYAPMDVEVYIVIPEGFEGAGKDALLQQAMYGTKQAGNLWGKHLDGKLTQRGGVQSKADKCL
YTFAMKGTTVYVNVHVDDILPGGPDAEAVADVKRRIARHFECRDMGEVTSYLGMQVEWDKAAGTVTLSNPRHTADLLKEY
E
>Retrovirus_RCHO-K1 
LEQGILVPCKSPWNTPLLPVRKPGTNDYRPVQDLREVNKRIEDIHPTVPNPYNLLSGLPPNYTWYTVLDLKDAFFCLRLH
PTSQPIFAFEWQDADLGISGQLTWTRLPQGFKNSPTLFDEALHQDLAGFRVRYPALILLQYVDDILLAAKTKEECKEGTR
ALLQTLGSLGYRASAKKAQICQKQVTYLGYKIKDGRRWLTEARMRAILDIPTPQNPRQLREFLGTAGFCRLWIPGFA
>Gypsy_Real 
LEKGFIRVSSSPAAAPVLFAKKPGGGLRLCIDYRALNAITKKDRYPLPLIRETLNNLSKAKWFTKLDVIAAFHKIRVAEG
DEWKTAFRTRFGLFEWLVTPFGMANSPSTFQRYINWTLREFLDDFCSAYLDDVLIYTDGSLKQHQEHVRKVLRKLQDAGL
QVDIKKCEFEVKSTKYLGFIIKAGKGISMDPAKVAAIREWEAPQTVKGVRSFLGFANFYRKFIKNFS
>Gypsy_Reina 
LEQGVIQHSSSPFASPVLLVKKKDGEWRLCVDYRRLNAHTVKNRYPMPVFDEIVDELCGTKIFTKLDHRSGYHQIRIKEG
DEFKTAFQTHNGHYEYRVMPFGLTGAPATFQDFMNKILTPFLRKCVVVFLDDVLIYSRDMEEHVLQVKQVFQKLKDHQLK
LKLSKCRFAQTTLEFLGHIISAEGIATDPEKVQVIRDWPIPNNVKEVRSFLGMAGYYRRFVAHYA
>Gypsy_REM1 
LAKGMIQPSTSPYGAPVIFVEKADGSLRMVLDYRALNKITRKRRYPMPNITELFDQLAGAKVFSSLDLQQGYNQIRIHPD
DVPKTGFIAPGMGQFEYKVLCFGLTNAPATFQSVMNNMFGPHIGKFVLVYLDDILVFSKNAEEHKEHLRTVLEILRKNQF
KAKRSKCDFNRPELHFLGHIVSREGLKVDDRKIRVIREWEVPQDLHKLRAFLGLANYFRRFIQGYS
>Copia_Retrofit 
METEYNALIKNDTWHLVPYEKGQNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILS
IAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESSSKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKAD
TSLFFLNKGGILMFVLVYVDDIIVASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGVILTQEKYANDLLKR
VN
>Gypsy_Retrosat-2 
LQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLRIREE
DIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLY
AKFSKCDFWLTEVKFLGHVITAQGVAVDPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFS
>Gypsy_RetroSor1 
LDAKVIREVIYPEWLANVVLVPKKNGKMRMCIDFTDLNKACVKDSFPLPRIDTSVDKAAGCQRFSLLDCFSGYHQIWLKK
EDEGKASFTTPFGTYCYTRMPEGLKNAGATFSRMMGKVLGSQLQRNIIAYVDDVVVMSKRKEDHIKDLQETFVNLRSAGL
KLNPEKCVFGVSKGKMLGYIISSEGIRANPDKTKAIMSMAEPSNKKEVQRLTGRIAALNRFISRSA
>Retrovirus_REV 
RAAGILRPVHSPWNTPLLPVRKSGTSEYRMVQDLREVNKRVETIHPTVPNPYTLLSLLPPDRIWYSVLDLKDAFFCIPLA
PESQLIFAFEWADAEEGESGQLTWTRLPQGFKNSPTLFDEALNRDLQGFRLDHPFVSLLQYVDDLLIAADTQAACLSATR
DLLMTLAELGYRVSGKKAQLCQEEVTYLGFKIHKGSRTLSNSRTQAILQIPVPKTKRQVREFLGTIGYCRLWIPGFA
>Gypsy_rGmr1
LKLGVIEPSRSPWSSPIVMVPKPDGTLRFCNDFRKLNEASSFDGYPMPRVDELLDRLGSARFISTLDLTKGYWQVPLAPG
AKEKTAFTTPSGHWHYRVLPFGLHGAPATFQRMMDILLRPHQSYAAAYLDDVVVHSMCWEEHLTRLRRVLLELRRAGLTA
NPKKCHLGLAEAKYLGYHIGRGLIQPQQAKVEALQKTPRPTNKSQVRAFLGLAGYYRCFIPNFS
>Gypsy_RIRE2
LAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKE
SDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRM
KLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLG
>BEL_Roo
LGHMIEVSDEGKYFLPHQAVIRDSSLTTKLRVVFDASAKTTNNKSLNDIMWVGPRVQKDIFDIIIKWRKWEFVVSADIEK
MYRQIKIDNNDQKYQYILWRNSPKEKIKTYKLTTVTYGTASAPYLATRVLVDIADKCKNQVISAIIRNDFYMDDLMTGAD
SVEEANKLITLIPHELQKVGFNLRKWISNNSKILTTVEDTGDNKVLNIIENECVKTLGLKWEPQKDLFKFSVNCNDESKN
INKRVVLSTLAKIFDPLGWLAPVTVSGKLFIQKLW
>Caulimovirus_RTBV
LLDNKLIKKADPTCRHRTAAFIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFH
HMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFALLYIDDILIASNNEKEHIEHLKIFFNRVK
EVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTLKGLQAYLGLLNYARGYIKDLS
>Retrovirus_RTVL-Ia
INDGLLEPCMSPYNTPILPVKKSDGSYRLVKDLRAINQTVQTTNPVVPNPYTILSKIPYNHQWFTVIDLKDAFWKGCFLG
MSLAEESRDTFAFEWEDPQLGKQWYQWTVLPQGFMDSPNLFGQILEQVLDKVSVPKQLCLLQYVDDILISGEDIEKEAGF
STHIFDHLQFEGLRVSKGKLQCMEPKVKYLGRLISAGKRRIGPEWVEGIVSLPLPQTKQELRKFLGLVGYCRLRINSHA
>Copia RTvr2_
MQDKMKSLYDNHTCDFVNLPKGKRALENRWIFRVKQESNSTSTRYKARLVVKGFRQRKGVDFNEIFSSVVRMTSITVLSL
AATLDLEVKQMDVKTTFLHGDLEEEIYMKQPDDFLIEGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTFDH
CVFVRKFSENDFIILLLYVDDMLIVGKDVSKIDRLKKQLGESFAMKDMGAAKKILGISITRDRKEKKLWLSQKHYIQKVL
QRFQ
>Caulimovirus RuFDV_
VNDLLTQACSENPLDENKNHNGLLAEIKLINPATTVNVKSMAYSPDDAVEINKQIQELLEIKVIRPSRSPHSSPCFLVQN
HNEIKRGKKRLVINYKALNAATISDGYLLPNKETILTAIRGRKYFSTLDCKSGFWQIRLNENSKPLTAFSCPMGQYEWNV
VPFGLKQAPGLFQRFMDNSFKEYSAFCAVYVDDILVFSKTLDEHYDHLETVLRKCIETGIILSKKKAEVAKTKINYLGFT
ISNGEIELQSHILENIKLFPSRIPDKKSLQRFLGILTYADQYIRKLAEWRKPLQRKLKKDTVWEW
>BEL_Saci-6
LSKSYIIEASKEGFDRDAVCWYIPHHPVINPKKPGKLRIVFDCAAVYQGFSLNDQLLRGPNSVNSLLGVLLRFRLGNVAL
AADIEEMFLQVRIPRQDRGAFRLLWWEDGDIKRTAKARVSLLKVQTIPRLELTAAVLAARMGSQLQS
>Retrovirus_SA-OMVV
EKEGKVGRAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLQKKKHVTILDIGDAYFTIPLYE
PYRPYTCFTMLSPNNLGPCTRYYWKVLPQGWKLSPSVYQFTMQEILRDWIAKHPMIQFGIYMDDIYIGSDLDIMKHREIV
EELASYIAQYGFMLPEEKRQEGYPAKWLGFELHPEKWRFQKHTLPEIKEGTITLNKLQKLVGDLVWRQSLIGKS
>Caulimovirus_SbCMV
LLKKGLIRESQSPHSAPAFYVENHNEIKRGKRRMVINYKKMNEATIGDSYKLPRKDFILEKIKGSLWFSSLDAKSGYYQL
RLHENTKPLTAFSCPPQKHYEWNVLSFGLKQAPSIYQRFMDQSLKGLEHICLAYIDDILIFTKGSKEQHVNDVRIVLQRI
KEKGIIISKKKSKLIQQEIEYLGLKIQGNGEIDLSPHTQEKILQFPDELEDRKQIQRFLGCINYIANEGFFKNLA
>Caulimovirus_ScBIMV
IEEMKEQGYMGEDTLKHWEKNKVKCKIELINPDLIIKDKPITMLTIQTKEAMRKHVDALLARGVIRKSNSPHRTNAFIVE
SGTSVDPVTKKEIRGKPRLVFNYKRLNDNTWPDQYSLPGINALLKNVARAKIFSKFDLKSGFHQVAMDPESIPLTAFTAY
NELYEWLVMPFGLKNAPAVFQRKMDDCFRGTERFIAVYIDDILVFSETEEKHAEHLWKMLQICKKNGLILSPSKYKIGVK
RVDFLGSTIGDNQLAVQEHIVSKIADFDEERLKTKEGLKSWLATLNYARNHIKDMGKLLGPLYPKTSEKGAKGL
>Retrovirus_SERV
LEAGHIIESNSPWNTPIFVIKKKSGKWRLLQDLRAVNITMVLMGALQPGLPSPVAIPQKYFKIIIDLKDCFFTIPLHPAD
QKRFAFSLPSTNFRQPMKRYQWKVLPQGMANSPTLCQKYVAAAIEPVRKTWTQMYIIHYMDNILIAGKIGEQVLQCFAQL
KQKLTAAGLQIAPEKAQLQDPYTYLGFQINGPKIINQKAVIRHDHLKTLNDFQKLLGDINWLRPYLKLTT
>Retrovirus_SFV-1 
LKQGVLIQQNSTMNTPVYPVPKPDGKWRMVLDYREVNKTIPLIAAQNQHSAGILSSIYRGKYKTTLDLTNGFWAHPITPE
SYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEIPNVQAYVDDIYISHDDPQEHLEQLEKIFSILLNAGYVVS
LKKSEIAQREVEFLGFNITKEGRGLTDTFKQKLLNITPPKDLKQLQSILGLLNFARNFIPNYS
>BEL_Sinbad 
KGYIIEASKEGFDRDAVCWYIPHHPVINPKKPGKLRIVFDCAAVYQGFSLNNQFLRGPNTVNSLFGVLLRFRLGNIALAA
DIEEMFLQVRIPRQDRGAFRLLWWEDGDMKRTAKEYCLTVHPFGAVSSPFCANFALKKTVDIFGKEFNRDIQEVVDNSFY
VDDYLASIDNVQDAIELAKTLGLLLRKGGFRLTKWISSCLQVLESIHPEERAEAVGEIDFERLPTERTLGLFWNTMVDSF
DFKVHIPKRPLTRRGILSSVASLYDPLGLLAPFILPMKQLLQRLG
>Copia_SIRE1-4 
MQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLG
VACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGID
KTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKK
FG
>Retrovirus_SIVAGM 
EKEGKISKVGGENPYNTPVFCIRKKDKTQWRMLIDFRALNKATQDFFEVQLGIPHPAGLKRKKQITVLDIGDAYYSIPLD
PEFRPYTAFTIPQVNNVGPGIRYQFNCLPQGWKGSPTIFQHTAQRVLKEIGKKVQDLEIIQYMDDMWIGSDLPEKEHDEK
VEEVRKLLLLRGFETPDKKVQKRPPYDWMGYKLYPSHWSLNKIEIPEQEHWTVNDIQKLVGVLNWASQLYPGIK
>Retrovirus_SIVMAC 
EKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPLD
EEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDILIASDRTDLEHDRV
VLQLKELLNSIGFSSPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIK
>Gypsy_Skipper 
IDLGIIKRSESNYSSPIMLLKKRDSWRVVHDYRQLNKVTVRDDHPFTPVDSLLNQCKDSKLFSKFDMIMGYFQVLINPEH
AKYTAFITHIGKFEYTRMPQGLVNSPSTFARLMVEIFGKIKSLLQYFDDLLVHSKLDYMVHFIEIIRMLLYCRKYLLFIS
REKSEMLKTEVDFLGFHIHKDGISPRAAKVRAISELPEPRNAKEAEAALGLFGFFRRHIENYA
>Gypsy_Skippy 
IRKGYIRPSKSSAGFPVMFVPKPNSNKLRLVVDYRQLNEITEKDRTSLPLITELKDRLFGKKWFTALDLKSAYNLIRIKE
ADEWKTAFRTKYGLFEYLVMPFGLTNAPAVFQRMITNVLREYLDIFVVCYLDDILIFSDTEEEHTEHVHKVLKALQDANM
LVEPTKSHFHQSQVTYLGHEISHNEIRMDRRKIAAVAEWKVPTSVKETQSFLGFANYYRRFIKDFA
>Retrovirus_SMRVH 
LAAGHIEPTNSPWNTPIFIIKKKSGSWRLLQDLRAVNKVMVPMGALQPGLPSPVAIPLNYHKIVIDLKDCFFTIPLHPED
RPYFAFSVPQINFQSPMPRYQWKVLPQGMANSPTLCQKFVAAAIAPVRSQWPEAYILHYMDDILLACDSAEAAKACYAHI
ISCLTSYGLKIAPDKVQVSEPFSYLGFELHHQQVFTPRVCLKTDHLKTLNDFQKLLGDIQWLRPYLKLPT
>Retrovirus_SnRV 
LEQGVLRKCNSTVNSAIWPVGKPDGSWRLTIDYRPLNSAVSCPYPTVASTPELFAKLEKKYQVYSSLDISNGFWSIRLEE
ECQYLFAFTFDTQQYTWTRLPQGFHASPGIFHQALYNGLASCKTAIESQGCKLLQYVDDILLMSEDRDHHLRSLAILLQG
LKDLGVKINPKKSHFCKDQVQYLGVNVGADTRSLIDARSQLIRTLDIPLTVQGLRSALGLFNFCRAWIPEFS
>BEL_Spirobel 
NGFVEEVNDVQGRPGRTWYLPHHTVLREDKSSTKCRIVFDGSAQFRNDSLNRQLDPGPPLQKDLVQILLRFRRFRVGLQA
DISKMFLQIGLHEKDRDVTRFLWRELGSQETPRIFRFKRVCFGLTCSPFLAMSVTRHHALNHLQGFPQAANQVLENMYVD
DIVFSVDEDDVARETVRQLVSLMKKGGFHLTKWVSNLSTVLADVPSEDIMGKNTNTSKILGIVWDSANDELAYSVLSDVD
PWSRDTKRQLISVTAKVYDPLGHLSPYLIKAKVLFQKLW
>Gypsy_SPM 
LDRLGKAGVIKKVKNSRWAAPIVTVPKSDGSVRLCGDYKQTVNKVLEEDVYPLPTCEDLFANLAGGKVFSKIDLSNAYLQ
LELTDKSKELLTIHTHKGLYQYERLPFGVSTAPAVFQSVMDRILGGMKGVCCYLDDILISSENEEDHIKTLNEVLGRLQE
YGVKAKKEKCSFMVSRVIYLGHEIDGKGVHPTKEKVEGICDAKRPENKDELRTFIGIVVYYAKFVPNLA
>Gypsy_Springer 
LKNGIIQKSKSPYNNPIWVVDKKGTDDAGNKKMRLVLDFRKLNERTVPDRYPMPNISMILGNLGKAKYFTTLDLKSGYHQ
ITLAERDREKTAFAVNGGKYEFRRLPFGLRNAASIFQRTIDDILREQIGKFCYVYVDDVIIFSEDENDHVKHVDWVLKSL
YDANMRISAEKSRFFKKSVSFLGFIVTNNGAATDPEKVKAIKEFPEPKNVFEVRSFLGLASYYRCFIKDFA
>Retrovirus_SRV-1 
LEAGHITESNSPWNTPIFVIKKKSGKWRLLQDLRAVNATMVLMGALQPGLPSPVAIPQGYLKIIIDLKDCFFSIPLHPSD
QKRFAFSLPSTNFKEPMQRFQWKVLPQRMANSPTLCQKYVATAIHKVRHAWKQMYIIHYMDDILIAGKDGQQVLQCFDQL
KQELTIAGLHIAPEKIQLQDPYTYLGFELNGPKITNQKAVIRKDKLQTLNDFQKLLGDINWLRPYLKLTT
>Retrovirus_STcLV2PP1664 
LEASYIEPYSGPGNNPVFPVKKPNGKWRFIHDLRATNAITTTLASPSPGPPDLTSLSTALPYLQTIDLTDAFFQIPLPKQ
FQPYFAFTIPQPCNYGPGARYAWTVLPQGFKNSPTLFEQQLAAVLSPIRKTFPMSTIIQYMDDILLASPTQEELQQLSKM
TLQALVTHGLPVSQEKTQQTPGQIRFLGQVISPNHITYETTPTIPIKSQWTLTELQTVLGEIQWVSKGTPILR
>Copia_Sto-4 
MEDELESMRMNKVWDLEVIPHGAKTVGCKWVYKTKRDSRGNIERYKARLVAKGFTQREGIDYHETFSPVSTKDSFRIIMA
LVAHFDLELHQMGVKTAFLNGELEENVFMAQPKGFVVSGKEHMGCHLRRSIYGLKQASRQWYIKFDQTIRKFGFEENKED
NCIYAKFRKGKYIFLVLYVDDILLASSDKDLLAETKGFLSSNFDMKDMGEASYVLGIEIHRDRQKGVLGLSQKSYIENVL
KRYN
>Gypsy_SURL 
YERLDVITPVDEPTDWVSSLVVVMKKNGQLRVCLDPRDLNRAIKREHYQLPSRAEITAHFAGAKYFSKLDASSGFWQIQL
DDESSKLCTFITPYGRYKFLRLPFGICSAPEVYHKIVHQMFAHIPGVNTMMDDVIVWGTTQQEHDNRLREVLSIARRMNL
KLNKDKCEFSVKKLTFIGDLISDQGVQPDPKKVSAILNMERPKCRKDVQRFLGMINYQGKFIPDLA
>Gypsy_Sushi-ichi 
LASGIIRPSSSPLAAGFFFVAKEDGGLRPCIDFRKLNNITVKNKYPLPLMSSTFEPLTHARVFTKLDLRNAYHLVQIRKG
DEWKTAFNTHLGHFEYLVMPFGLSNAPAVFQELVNDVLRDMINVFVVVYLDDILIFSRTMEEHHQHVRLVLQRLLENRLF
IKAEKCIFHSASVGYLGYIVEEGRVRADPAKIQAVVEWPRPTDRTQLRRFLGFAGFIRRFIKGFA
>Caulimovirus_SVBV 
VEKLLDSICSEHPLDSRINKGKFEAQIALLDTNKIIKCKPMQYSPQDREEFKTQIEELLKLGIIRPSKSPHSSPAFMVRN
HAEIKRGKARMVINYKKLNDHTKGDGYLLPNKEQLLQRIGGKTFYSSFDCKSGFWQVRLAPETIQLTAFSCPQGHYEWLV
MPFGLKQAPAIFQRHMDESLSNMYPQFCAVYVDDIIVFSKTEEEHLGHVKIVLNRCKALGIVLSKKKAQLCKTTINFLGL
VIERGNLKVQSHIGLHLVAFPDQLSDRNALQRFLGLLNYISAYFPKIANLRSPLQVKLKKEITWSWTE
>Caulimovirus_TaBV 
LLMLKVIQPSKSRHRTMAFLVNSGTTVTADGKEIKGKERMVFNYKALNDNTYKDQYSLPNIQLILKKVINSTIYSKFDLK
SGFHQVAMDPDSVEWTAFLVPQGLYEWLAMPFGLKNAPAVFQRKMDAVFKGCEKFLAVYIDDILVFSNNEEDHAKHLVIM
LQRCKEHGLVLSPTKMNIAVREVNFLGATIGSRKVKLQENIIKKILDFDTEKLQSKKGLRSFLGILNYARNHIPNLG
>BEL_Tamy 
SGYAEEAPSGTTPGRTFYLPHFAVVHPMKKKIRIVFDAASRYEGKSLNDALLPGPDLLQSLFGVLLRFRQGPVAVVADIK
EMFLQIKIREQDRDSLRFLWRGEDRASKPREYRMTSVIFGAASSPATAIFVKNRNAEEHQASHPEAVKAIVRNHYMDDYL
QSFATIEEAIDTAATVDSIHKEAGFELRQWASNEQRVLDGLQREEASPTEVAIGSNEEKTLGLRWLIKDDALAFNGGLRN
APKEIIEGNRVPTKREVTSAVMSTFDPLGLIAPLLIKGKRMLQDIW
>BEL_Tas 
CGVIEEVPQEELKPTFNIVHYLPHQAVINPHKTTTKIVVFDGSSKSRGTKSINEAIMRGPVLLPNLGGLLLRFRSMPIAI
IGDLEKAFLQVALNKPDRDAARFLWLSDINSSPSHSNLVFRFARVPFGLNASPFLPTATIKTHLDSYGDVALAEEIWKNI
YVDNVLISARTTKEAFNKFESIKKLFEDARMNIREFLSNDATFNKTIPERDRHEATNAKLLGLRWNTTADYIQWKVSPPK
QPMMTKRQLLSYIAAQYDPTGHIPPLFTPLKVILQ
>Gypsy_Tat4-1 
LGAGSIVEVKYPEWLANPVVVKKKNGKLRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQIPMHK
DDQEKTSFITDRGTYCYKVMPFGLKNAGARYQRLVNQMFAPQLGKTMEVYIDDMLVKSKKSADHIEHLTACFETLNKYNM
KLNPAKCSFGVTSGEFLGYIVTKRGIEANPKQIQAILDLKSPRNKKEVQRLTGRIAALNIFIARST
>Copia_Tdh2 
IQRELDTFKKYEVYTVVKNPKNVKPIPTTWVHTHKINDLKEVQYKSRCVVQGFRQIANEHYDTSKVSSPVIELSIIRLLT
AIAVEYEWPIHHLDISSAYLHADIDYEKSIFVKPPPGSNIDSGKCWQLNKSVYGMKQAGYMWYQCITKVLMDLNFEPDTA
ISGMFCKYFGENKKLIVALYVDDMFLTSSNITILNDFKLELAKHFDLKYFADISEFLGIEFIQIAGGYRLSQHNFL
>Gypsy_Ted 
LDQGIIRPSDSAWSSPIWVVPKKIDASGKQKWRLVVDFRKLNEKTIDDKYPIPNISDVLDKLGKCQYFTTLDLASGFYQV
EMDPQDISKTAFNVEHGHFEFLRMPMGLKNSPSTFQRVMDNVLRGLQNNICLVYLDDIIVYSTSLQEHLENLERVFQRLR
ESNFKIQMDKSEFLKLETAYLGHIISRDGIKPNPDKISAIQKYLIPKTPKEIKQFLGLLGYYRKFIPDFA
>Gypsy_TF1 
LKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG
DEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLI
INQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTS
>Gypsy_TF2 
LKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG
DEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLI
INQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTA
>Gypsy_Tft2 
LKIGSIREVQYPDWLANTVVVKKKNGKRIVCIDFTDLNKACPKDSFPLPHIDNLVESTAGNELLSFMDALSGYNQIMMNP
EDQEKTSFITDRGIYCYKVMPFGLKNAGATYQRLVNKMFNEHLGKTMEVYIDYMLVKSLKKEDHVKHLEECFAILNQYQM
KLNPAKCTFGVPSGEFLSYIVRKRGIEANPNQINAFLNMSSPKNFKEVQRLTGRIAALNRFISRST
>Copia_Tkm1 
YQKEIAQLTKMNTWNEELIDASTLPKKKILNSMFIFTTKRDNSKKCRLVARGDQQAADTYDTELKANTVDNLALMTVLAL
TLDYNLTAFQLDISSAYLYADLKEELYIRAPPHMNAKNKVLRLNKSLYGLKQSGANWYELIRSFLIKKCDLIEDRMWKCV
FRDKEPLKLIICLFVDDMLVVGNDVKYIKKFISKLSKRFDTKIVNDGSHRPEDGVNEYDILGIELEYKKKEYMKFGMQK
>Gypsy_Tma 
LGKGFIRPSTSPGAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEAD
VRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLEEHEVHLRRVMEKLREQKLFA
KLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTPTNATEIRSFLGLAGYYRRFVKGFA
>Gypsy_Tntom1 
ENARHRYHRTLQVPIRVPCAIPKETWQFTTLCDYRALNIITVKNKYPIPLMAYLFDRLGGAMVFTKIDLMTGYWQVRIAE
GDEHKMTCVTRYGSYDFLVMPFGLTNAPAIFCTLMNEVFQEYIDEFMVVYLDDIVVNIHTLEEHLEHLRKVLARLREHLY
AKLYKCSFAQKQIDFIGHVIEEGRIKMDQQKIQAITNWPPPKDIHALRSFLVLNFYWLFVKNYS
>Gypsy_Tom 
LEQGLIRESNSPYNSPTWVVPKKPDASGKAKYRVVIDYRKLNEITIPDRFPIPNMDEILGKLGKCQYFTTIDLARGFHQI
EMDSESIQKTAFSTKRGHYEYVRMPFGLRNAPATFQRCMNNILRPLINKHCLVYLDDMIIFSTSLDEHLNSLQLVFEKLS
ESNLKLQLDKCEFLKKEATFLGHIVTPDGIKPNPLKVEAIASYPIPTKVKEIRAFLGMTGYYRKFIPSYA
>Gypsy_Tor1 
MEDAGIIEKASGSSFNAPLQLVRKSSGGYRICVDMRSLNNRLAESKWPLPSLAETLESLAGTAFFSCVDIRQAFFHMALT
DESKHLTAFSALNCQYQFRRLPMGLKISPSVYQMAMKETLGNDLGNKAVVYLDDVLVTGRTEDEHLEALDVVLDRLRKAG
FLLNPDKCILGVKKTTFLGHEVTTEGYYPKTDNLAAIREFPKPTNKKALRRFIGMTAFYSTLVPKLQ
>Gypsy_Tor2 
VKAQIDNMAKDGIIEPCPDGKGFHSPLVIVRKKTGGLRICSDFKSSLNQCLDETTDIWPLPQMDHLFANIEHGHRIFTSL
DVSKAYWNLLIDPRDRHKTNFTFDNKCWMYVRLPFGLKFSGDAFCRSISSMLDRVSLKSNFCNYVDDVLAYSSDCETHVK
VLQQIFSACRHFGARLGAKKCTFGQASTAFMGRIISAEGISIPPENMETILALKPPTTRKQVQSLIGNFCWLKSWVSANL
>Gypsy_Tor4a 
LDQFLENKLIEPCSSPWNSPSLLVRKKDGRFRLVIDYRRLNDATLQMHHPLPNLEDSISYLEKSRVYSMCDMIKGFHQID
LDEDSKQKTAFSNEFGQFQYTRMPMGCKNAPSFFMRIMDKALLGVKKTEIIAYMDDLLCHSQTEVEHIKILEKLFQILAV
NNLRINSKKAAFFTDSVNFCGYDISNGKICPSQDKIEAIQKLKIPRTKDAAQSLFGALNYHRRFIRNFA
>Copia_Tork4 
MGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLL
AIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSY
DCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQK
VLARFG
>Copia_ToRTL1 
MQEELHQFERSKVWYLVPRPKGRTIIGTRWVFRNKLDENGVITRNKSRLVVQGYNQEEGIDYDETFAPVARMEAIRILIA
FAAFMGIKLYQMDVKSAFLNEDLKEEVYVKQPPGFEDAELPNHVFRLNKALYGLKQAPRAWYERLSKFLLKNGFKRGKID
NTLFLLKREQELLIIQVYVDDIISGTTSEHLCEEFSSLMGREFEMSMMGELTFFLGLQIKQSSNGTSICQEKYIKELLKK
FN
>BEL_Tribel 
LEHMQEIKTMTDETNNNGYYFLHHPVVNDKQDKIRVVFDGSAQTDCGLSLNDCQMVGPTIQNELLSIILRFRKYPYVLTA
DIEKMYRMVLMHPDFHRYQRIYWRNQSDEEMKTYELTTVTYGTSAAAFLAIRCLYQVALDLKSDDPELSKVIENDFCVDD
LMTGAQSMEAAMELKDRLCKALNQVGFNLTKWRTNFDHVPEETETIMLGDNESKKLGTLWNSRQDTINYEIVFGEPPRST
TKRVIISEVSKIFDPLDLLGPVVIKAKILMQKLW
>Copia_Tricopia 
ITSEITSILKNDTFELVDRPKEGNVIGSVILRNKFKSNGMLERRKARLVAQGFSQKPGIHFNETFAPVTRFSSIRLLAAL
AVEHGMRIQQFDVTTAYLNGEIEEEIFMEPPKNFEQILSGDKVCRLKKSLYGLKQAGRNWYEKLSSTLKETGAVPTSSDP
CFFRLGSGEDITFIAVYVDDILVASRNRNMISRVKNCLSSRFDLKSLGDVKSCLGVEFDQRDGQVTMHQRGYINEILARF
G
>Copia_Tse1 
YDKEINQLMKMNTWDNNQLYDAKDIPSKKIINSMFIFTTKRDGTRKCRFVARGDQQHPSTYDENAIANTVHHYALMTSLS
LALDSKKYIVQLDISSAYLYADLSEELYIRTPPHMSKRGKVMRLNKSLYGLKQSGANWYNTIKEYLIKKCKLQEVKGWSC
VFRNKDLTVCLFVDDMVVTSSNRELANKFIDTLKKKFETKVVNTGEIDNQGYAYYDILGLEIEYKFGSKMKIGMEKLQ
>Gypsy_Tse3 
IASGNVIPSESPYAAPVIFVQKKDGTKRLCVDYRGLNDITIKSKFPLPLIEDVLDQLSGATIFSKLDLISGYHQVAIADE
DQYKTAFTTHRGQYSWRVMPFGLTNAPATFQRLMNYVLRDYINKICVVYLDDILIYSKNEKEHSEHVSTIINVLRKHQLY
AKKSKCEFYVPKIQFLGHELSAKGITPDKEKILAIKDWPTPKTYKDAQSFIGLAGYYRRFIKDFS
>Copia_TSI-9 
MHEELENFERNQVWVLVDPPPSCKPIGTKWVFKNKQGEDGHVVRNKARLVAQGFCQKEGIDYGETFAPVARLEAIRILLA
MAASHGYKLYQMDVKSAFLNGFIEEEVYVKQPPGFEHPNFPDRVFKLQKALYGLKQAPRAWYARLKTFLLKNGFKMGSVD
KTLFLLRQGNDTLIVQIYVDDIIFGGSSHVLMKKFADVMSKEFEMSMMGELKFFLGLQIKQTSEGTFVHQGKYTKDVLQK
FA
>Copia_Tto1 
MQDEIKSLHENKTFELVKLPKGKRALKNKWVFKMKHDEHNSLPRFKARLVVKGFNQRKGIDFDEIFSPVVKMTSIRTVLG
LAASLNLEVEQMDVKTAFLHGDLEEEIYMEQPDGFQQKGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMGQHGYKKTTSD
HCVFAQKFSDDDFIILLLYVDDMLIVGRNVSRINSLKEQLSKFFAMKDLGPAKQILGMRIMRDREAKKLWLSQEKYIEKV
LQRFN
>Gypsy_Tv1 
PFSDLIKPIPNGLPVIIVPKRNDAFGKPKFRLVIDYRHFNELTINDKYPIPIMDEILDKLGKCQYFTTIDLAKGFHQIQM
DPGSIPKTAFSTKHGHYEYTRMPFGLKNAPATFQRCMNNLLEDLIFKDCLVHLDDIIIFSTSLEEHILSLQKVFKKLREA
NLKLQLDKCEFMRKETEFLGHIITTEGIKPNPNKIQAIVKFPIPKTPKEIKSFLGLCGFYRKFIPNFA
>Caulimovirus_TVCV 
IQKKLEKLYNDNPLQGWEKHKTKVKIELIEENSIITQKPLKYNFNDLTEFKIHIKDLLDNKYIQESNSKHTSPAFIVNKH
SEQKRGKSRMVIDYRNLNAKTKTYNYPIPNKILKIRQIQGYNYFSKFDCKSGFYHLKLEDESKKLTAFTVPQGFYEWNVL
PFGYKNAPGRYQHFMDNYFNQLENCIVYIDDILLYSRTQDEHIKLLEKFAHIIENSGISLSKTKAEIMKNQIEFLGIQID
KNGIKMQTHIVQKIINLDENIDTKKKLQSFLGIVNQVREYIPKLAENLKPLQKKLKKDVEYSF
>Copia_Ty2 
YHKEISQLLKMNTWDTNKYYDRNDIDPKKVINSMFIFNKKRDGTHKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLS
IALDNDYYITQLDISSAYLYADIKEELYIRPPPHLGLNDKLLRLRKSLYGLKQSGANWYETIKSYLINCCDMQEVRGWSC
VFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGERDNEIQYDILGLEIKYQRSKYMKLGMEK
>Gypsy_Ty3-1 
LDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPK
DRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVK
KKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCS
>Copia_Ty4 
YHKELQNLKDMKVFDVDVKYSRSEIPDNLIVPTNTIFTKKRNGIYKARIVCRGDTQSPDTYSVITTESLNHNHIKIFLMM
QTTEICLWTLDINHAFLYAKLEEEIYIPHPLIGDVYVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLYQTED
KNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYK
>Gypsy_Ulysses 
LKLGIIEESDSPWSNRTTVVMRPGKNRFCLDARKLNSVTVKDAYPLPCIEGILSRSTRLILSLASTLSSRSGNRDGGEEQ
GVYGVYCTRRPLYQFRHMPFGLCNAAQHFEAHMDKVIPANLRSNVFVYLDDLLIISADFPTHLKYLELVAECLRNANLTI
GMAKSKFLFRNLNYLGFIQLRRRTWRMDPGRVEAIRNIPNPRTVKELRSFLGTAGWYRRFIKNFA
>Copia_V12 
MHEDMKSLHKNNTYELMELPKGKRALKNKWVLKRKPEPNRSQPRYKARLVVKGFSQKKGIDFEEIFSPVVKMSSIRVVLG
LAASMNLEIEQLDVKTAFLHGDLEEEIYMEQLEGFTIKGKEHLVCRLKKSLYGLKQAPRQWYKKFDSFMVEHGYDRTASD
HCVFVKKFSDGEFIILLLYVDDMLIVGRDTGKIDKLKKELSKSFEMKDLGSTSQILGIKISRDRTNGKLWLSQESYIEKV
LDKFN
>Copia_Vitico1-1 
XKEEIAAIEKNETWELVELLEDKNVIGVKWVFRTKYLADGSIQKHKAQLVAKGYAQQHGVDYDDTFSPIALFETVRTLLA
LAAHMHWCVYQFDVKSAFLNGELVEEVYVSQPEGFIVPGKEEHVYRLKKTLFGLKQAPRAWYSKIDSYFVENGFERSKSD
PNLYLKRQDDMIYMGSSSFLINEFKACMKKKFEMSDLGLLHFFLGLEAEDDTERADARRFRSLVG
>Copia_Vitico1-2 
LETFAKAFQNLDWSKAMKEEIAALKRNSDLGARAKAKXYGSIERHKAHLVARGFSQQYGLDYDETFSPVAKLTIMDVKNA
FLHKELDREIYMNQLMGFQSQGHPEYVCKLRKALYGLKQAPRAWYGKIAEFLTQSGYSVTHADSSXFVKANGGKLAIENL
SVRFEMKELGQLKHFLGLEVDCTHEGIFLCQQKCAKDLLKKFG
>Retrovirus_VMV 
EKEGKVGRAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLQRKKHVTILDIGDAYFTIPLYE
PYRQYTCFTMLSPNNLGPCVRYYWKVLPQGWKLSPAVYQFTMQKILRGWIEEHPMIQFGIYMDDIYIGSDLGLEEHRGIV
NELASYIAQYGFMLPEDKRQEGYPAKWLGFELHPEKWKFQKHTLPEITEGPITLNKLQKLVGDLVWRQSLIGKSI
>Retrovirus_WdSV 
ENQGILIKCHSPCNTPIFPIKKAGRDEYRMIHDLRAINNIVAPLTAVVASPTTVLSNLAPSLHWFTVIDLSNAFFSVPIH
KDSQYLFAFTFEGHQYTWTVLPQGFIHSPTLFSQALYQSLHKIKFKISSEICIYMDDVLIASKDRDTNLKDTAVMLQHLA
SEGHKVSKKKLQLCQQEVVYLGQLLTPEGRKILPDRKVTVSQFQQPTTIRQIRAFLGLVGYCRHWIPEFS
>Gypsy_Woot 
LDLGVIKREASPYASPMTVGKKKDGTVRICLDARMINSKMIADCESPPAADELLRRFHEIRYMSTIDLRSSYWQIPLSPE
SRQYTAFLYNGRSYTYQVLPFGLKTAVGSFSRAMDVVLGTEVREFVVNYIDDLLVASETLNEHLEHLRQVFEKLKQARMT
INLEKSNFIQKEVKFLGHILTINGIKADPEKISAIRNFPVPQKTKHVRAFLGLCNFYRKFCARYA
>Copia_Xanthias 
MQKEYDALVSNNTWTLCDLPPGQKAIGSKWVFRVKRDKEGNIQKFKSRLVAQGCGQKMGVNYSETFSPVIRYETIRMLFA
IAAEKQLCMHQVDISNAYLNGRLQEEVYMRQPQNFIDEKHPNKVLKLQKAIYGLKQSGRVWNDTLDEVLKSIGFKRSKNE
ACLYAKQQQQQHSYIAVYVDDLIIISYDENEISAIKRKIANKFDIHDGGQLNYFLGMEIQRESTRGSISLCQKQFIINLL
DKYG
>Retrovirus_XEN1 
LENGAIKRQSSPCNTPLFPVKEKGKAGEPDKYRLVQDLRAVNEATVMETPLVSNPHTILSGIPPSATHFRAVDLTNAFYS
IPLREDCQYLFAFTHERQQYVWTVLPQGAQNSPTHFSLALTSILDSWISSHPEITLLQYVDDLLLCAPDLPTCEASSTDL
LSFLADQGCKASKEKLQWCQTTVVFLGQCISQGTRHITEGRIKTLQDIPLPKGHKPLHAFLGLISYCRSWIPEAS
>Copia_Yokozuna 
IKTELNSQVKLETWEEATLPMGSKAIDTKWVFRTKQNGTKRARLVAKGFQQQNNDNHYAPVAKLSTIRLMMSLAVQLDLS
LKQLDVPTAFLNGKLNDNVYIKCPKGMEISEGKVLKLKRALYGLKEAPKCWNQRFHNFVTQKGFVQSQHDLCLYGKGKIW
ILLYVDDILYLGNSNEMIKELEKEFKVKNLGEVHQYLGLEVTRTEDSLEIRQTEIIKRLLEKYH
>Gypsy_Yoyo 
LEDGIIRPSRSPYNSPVWIVDKKPDSLGNKQYRLVIDYRKLNSVTIADRYPIPEINEVLSHLGSNTFFSVIDLKSGFHQI
PLKNSDIEKTAFSINNEKYEFTRLPFGLKNAPSIFQRTLDDILRDYIGQCCYVYIDDIIIFSRNEKEHSTHLKNIFTTLE
KANMKVQLDKCKFFEKEVEFLGFIVTPEGIKTNPSKIEAIQNFPIPRNLKELRSFLGLSGYYRRFVKDYA
>Gypsy_Zam 
LDQQIIRSSHSPWSAPVWVVPKKLDGTGNRKWRLVIDYRKLNDKTISDRYPIPNINDILDSIGKAKYFSTLDLTSGFHQI
EMNPKDIAKTAFTVEGGHYEFTRMPFGLKNAPATFQRVMDSVLGDLNGTICLFYLDDIIIFSPSLQKHLLDIKMVFEKLR
AANFKLQPSKSEFLRKEIEFLGHIVTQDGVKPNPNKISAIKKFPCPTNRRAIKSFLGLLGYYRKFIRDFA
>BEL_Zebel 
AGYVAKITAEEANKSNESWYIPHHVVHHNNKDRIVFNCSFQHQGQSLNSQLLPGPTLGPSLLGVLLRFRQHAVAVSGDIK
GMFHQVRLLPKDKQVLRFLWRDLCRDREPDIYEWQVLPFGTTCSPCCAIFALQHHAQGHKGDMPKLVNIVENSFYVDNCL
YSTPTAKEAKDVVDGLRQLLAEGGFDLRQWACNVPSVIQHLPAEALSTNSERWLTKASTDLQEPTLGLRWNCLNDSLGYN
LRSAEPLEPTMRNMYKTLASQYDPLGFIIPFTTRAKVLIQDLW
>Copia_Zeco1 
KQAEIFNWYKNNVFEEVEDAGQKCVSTRWVCSLKETQNGIVPKARLVARGFEELNIHELQKDSPTCASDSLRLLLAVICQ
NKWQVHSMDIKSAFLQGMQLSREIYVRPPPEVGKENVLWKLNKCVYGLADASLYWYIKVKIMLSTGSKLSKVDPAVFYWL
DEQCKVTGVLACHVDDFLWAGSQNFSTNVIPILKSALNVGREEHEHFCYVGMDFVTINGVVHVHQHRYIENLQPIQ
>Copia_Zeco2 
KQAEIFNWYKNNVFEEVEDAGQKRVSTRWVCSLKETQNGIVPKARLVARGFEELNIHELQKDSPTCASDSLRLLLAVICQ
SDKWQVHSMDIKSAFLQGMQLSREIYVRPPPEVGKENVLWKLNKCVSGLDVNTMMQMHHCIGTTKEIMLSTGSKMSKVDP
AVFYWLYEQCKVTGVLAHVDDFLWAGSQNFSTNVIPILKSALHVGREEHEHFCYVGMYFVTINGVVHVHQHSYIENLQPI
Q
>Retrovirus_ZFERV 
EAAEVLRRTVSGWNTPILPVLKKTTGKYRMVHDLRLINEKVLTATLPTPNPYTIMSKLTPKHSHFTCIDLANAFFCMPLA
EQCQGIFAFSYQGAQYTYNRLPQGFILSPGLFNQALRELLDSCTLHEGTIVIQYVDDLLLAAHSNEVCLQDTRKVLTLLS
TAGLKVSKEKIQISRATVHFLGRIIGQTGTALSDDTKQTVLSHPKPLVVKDMMSFLGLIGYSRQYVPNYS
>Retrovirus_ZFERV-2 
VKAGVLVETTSYCNTPIMPVIKPDKNRWRLVHDLRAINDIVEDFTAEVPNPHTLLTNIPPDAKYFTVIDLCSAYFSVPLA
EESRYLFAFTYAGKQYTYTRMPQGFKHSPHIFNQILKADLEDVMLESTLIQYVDDLIICSPSLEQCHRDSIKVLTKLAEG
GHKVSKNKTQYCQSQVEYLGRLIAFGTRAIAPDQLEAISKSPMPKTVGQMMTFLGMTGFSADWIEDYA
>BEL_Bel
rghmekltsaqveespdtcfylphhavikldslttkcrvvfdgsgkdssgvslndrlhigppiqrdlfgvclrfrqhqyvlcadvekmfrgikvfkphtnfqrivwrttenepllhfrlltvtyglapspflavrvlkqladdhgheypaaahallhdayvddiptgantfeelmilkdelialldkgkfklrkwssnswrllkslpeedrcfepiqllnksaadspvkvlgiqwnpgkdvlylnlkgcdatisptkrellsqlsriydp
lglvapvtvllklifqesw
>BEL_Suzu
rgaaaklsdstiaewtgpiwyishliapnphsvttpvrlvwnssqrfkgvslndlllkgpdvlnqiravllrfrsgvyaaigdvrkmynsvwledrevhlhrflwrnsaeeeiqeyavtrvnigdkpagciaqlamretaslpqfshltaerevlhrnayvddiltshndlkqlqattkgvedilkaggfalkpwvfsgqsgrgdhidrqetvqk
dafvlpnqmsdddnkalglgyivkeeklhvmvainfskrrkkmhlgkdlepqqvrfctpspltrrellsqvsglydpvglvapvkqkgailvrraf
>BEL_Pao
kgyaepapktktenrtwylphfavvnppkpeklrvvhdaaartrgvalndmllkgpnllqslpgvimrfrqhnitatadikemfiqvklrpedkdalrylwrkdqrdnkppeenrmtslifgassspstaiyvknlnaqkheathpeaaatiqnrhyvddyldifkglkdavlvttdfrrkherkptsktfwidseivlrwtrtesrsyk
pyvaqrltaiedsstinerrwlptkhnvaddvtrhvpmsyqnehrwfrwteflrqrqnsw
>Copia_Copia
intelnahkinntwtitkrpenknivdsrwvfsvkynelgnpirykarlvargftqkyqidyeetfapvarissfrfilslaiqynlkvhqmdvktaflngslkeeiymrlpqgiscnsdnvcklnkaiyglkqaarcwfevfeqalkecefvnssvdrciyildkdnineniyvllyvddvviatgdmtrmnnfkrylmekfrmtdlneikhfigiriemhedkiylsqsayvkkilskfn
>Copia_Tnt1
mqeemeslqkngtyklvelpkgkrplkckwvfklkkdgdcklvrykarlvvkgfeqkkgidfdeifspvvkmtsirtilslaasldleveqldvktaflhgdleeeiymeqpegfevagkkhmvcklnkslyglkqaprqwymkfdsfmksqtylktysdpcvyfkrfsennfiilllyvddmlivgkdkgliaklkgdlsksfdmkdlgpaqqilgmkivrertsrklwlsqekyiervlerfn
>Copia_Ty1B
yhkevnqllkmktwdtdkyydrkeidpkrvinsmfifnrkrdgthkarfvargdiqhpdtydsgmqsntvhhyalmtslslaldnnyhitqldissaylyadikeelyirppphlgmndklirlkkslyglkqsganwyetiksylikqcgmeevrgwscvfensqvticlfvddmvlfsknlnsnkriidklkmqydtkiinlgesdeeiqydilgleikyqrgkymklgmen
>PLE_Coprina_Cc
RGELFVNQTIAKIRRLPAEAPTYKSLKPSRDDLFEFLTSNNYVITGTDKNLGIAVSERTWIDERCKEILDLATATHPNGKQLGEFFRSKITEKCSDTSGREYGDHTVPIFYGIPKIHKVPTKMRPIIPCHSAIQNPAAKFVSKNLKFLIKESPTILHGSKDLAQKLSNVKLKPGRRWFFISGDVVAYYPNIPREDCLREVFKMWSDARFGRTLDDNDEGTAEHYEFSLMYNALMTGNKKLVFRYGSKYYEQIRGLAMGVADSPDLANLWGVRSEISCGVLTNPLIEFYGRYIDDCLGVVYAHSEEEALSIAESIKIEGCTIEWTASEQYVHFLDMTVYRDSYSQLQWQPFRKAGNHQERIPWISAHPLDVKRGTFLGEMSRLATLSSQYDTYREALHGLAALYTKRGYPSELVSKWLKDNASDKWEKRLSDRNHDSTGTDGVLVLKSTFNTAWNYFSARELGDTILGYWKTYAEKAKKDQLGGIHWQQFSDNVGDFTDVPDELMSLFRTTKGLRYMPDVSKTNIW
>TERT_Arath_TERT
ELQSESIRSTQQMLCTKWISWLFLEIVKKLVHFNFYATESQGGRLNIYYYRKRSWERLISKEISKALDGYVLVDDAEAESSRKKLSKFRFLPKANGVRMVLDFSSSSRSQSLRDTHAVLKDIQLKEPDVLGSSVFDHDDFYRNLCPYLIHLRSQSGELPPLYFVVADVFKAFDSVDQGKLLHVIQSFLKDEYILNRCRLVCCGKRSNWVNKILVSSDKNSNFSRFTSTVPYNALQSIVVDKGENHRVRKKDLMVWIGNMLKNNMLQLDKSFYVQIAGIPQGHRLSSLLCCFYYGHLERTLIYPFLEEASKDVSSKECSREEELIIPTSYKLLRFIDDYLFVSTSRDQASSFYHRLKHGFKDYNCFMNETKFCINFEDKEEHRCSSNRMFVGDNGVPFVRWTGLLINSRTFEVQVDYTRYLSGHISSTFSVAWQNKPVRNLRQKLCYFLVPKCHPILFDSNINSGEIVRLNIYQIFLLAAMKFHCYVYEVSRFWKLHPQTLFKFITISVRYMFRLINRRVRRINTGSSFRPVLKLYKEEVIWLGLDAYIQVLKKKNSRYRMLLIYLKSALSKHSLSQQLSSELKYATDRSNSSSLWKLNY
>LINE-REL_NeSL_Cb
AIAPFAVCPDFSPINIAKHIGSLPSKVGFSPDFINFLVIKKCSDAITIPLSLIFQESFSSAKFPEIWKHSVVSPIFKKGSKYDANNYRPITLTHALSRLFERLILEELKRVIGPRISPNQYGFVSKRSCVLAVLESTSRIQKTLANKQQFVDVIYFDFRKAFDTVPHNLLLLKMRRIGIDERCCVWFESFLSNRSSNVKVNGLMSTSEIVVKSGVPQGSVTGPFLFLIYINDLLGLFPPNVHVTAFADDLKITGSDPLDMQRSIEIVEHWCDIWRLKLAENKTAVMHYGKRNPKTVYLIKGSPITPHRSFKDLGILVDDQLQFDKHINLIAYSAKLKSRQILKTFQSKNPFLYFRLFDTYIRPVLEYGCELFDPSNATLANKLESPFRYFTGKVIQRCNMPFNSYTDRLCQFSMLTTLHRRTLLVLR
>TERT_E_cunicul
CTRSEFVFRFRVSSRFLVYITEKLIIPIISKYFYCTETSFSKFKVHYFPRSIWRHFSSIHIDRFLEKFEPAKGSTTHSYSELRCIPKMNGARIISNMSKARNGRPSINKSIYPEFCVLRHETHGMLGNSILNHSGMYEKLSSYLSRSVRPLYILKVDLSGCFDNIPQDEVVSLVRRLLHKSRYHTKSFSILEEVGGELRSRYVCKVTENAETINELMMEPGAFVNKVVKENASQRILSREEVEGAMTNMIKRNYVKHNGKLFVQKTGIAQGSVASTLLCSLYYKSIDDLYFDRVFKEGILTRYVDDFLVISPCIDEIMKFLEVSQSISHLGINFSKEKMESNFGLEEHLKAASSISELSKHKHSMKITNAPVGWCGTKIYSDGFSIKSQTADPYLPFSIAHSSTKPGRALESRMRKLLQNRMSRIYIDPNNKKAYENIYDTFLFYGKKLGLLLGRMDFINRSFARRTLEHSKRFAFRICRKHGISITRKKIEDIASRAFDQSGVSRIV
>Hepadnavirus_GSHV
SPRTPRRITGGIFLVDKNPYNSSESRLVVDFSQFSRGHSRVHWPKFAVPNLQTLANLLSTNLQWLSLDVSAAFYHIPVSPAAVPHFLVGSPGLERFASCMSHDASNRNNSKLQTMHHICSRHLYNTLLLLFKTYGRKLHLLAHPFIMGFRKLPMGVGLSPFLLAQFTSALTSMVRRNFPHCLAFAYMDDLVLGARSYEHLTAVYSHICSVFLDLGIHLNVEKTKWWGHTLHFMGYTINGAGVLPQDKHVHKVTTYLKSIPINQPLDYKICERLTGILNYVAPFTKCGYAALLPLYQAIASHTAFVFSSLYKNWLLSLYGELWPVARQRGVVCSVFADATPTGWGICTTCQLISGTFGFSLPIATAELIAACLA
>Caulimovirus_CaMV_ORF5
LDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKL
>Retron_Ec86_Salen
MYIGEYILAKYSQSLYTQRLLSLPILQSIEDLSVKTRLPSPLLSQYLNDNSRYYCHISVPKKNGGYRPIDSPNRQLKAIQRWILRHILEKLQPSVYATGFVPGIALKRNAIPHTGNQYILKLDLKDFFPSIKASYVYSVFRAAGYSKQIAYSLTSICTLNGYLPQGAPTSPCLSNLVCLRLDQRIGKYCDRHALTFTRYADDISISGNKLSIVKKAWVVIKLILSEEGYVINKNKEMLSGPRSKREITGLVVTPKLGIGQRKYNMYRNKIFHLCHKNDNESILIIQGILAYIKGVDQDRYSKLKKYYDALKTKEVTE
>Retrovirus_HERVK
SRKRRNRVSFLGAATVEPPKPIPLTWKTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNALIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTPFHYLGMQIENRKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRILTPEATKEIKLVEEKIQSAQINRIGPLAPLQLLIFAT
>LINE-AP_DRE_Dicty
LDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKLLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYL
>Group_II_intron_Geobacter
QHLLERILATENMEVAWKRVRANKGAPGVDGITVNDFPDRFRPLWADIRASLATGTYQPKPVLRVEIPKPTGGFRPLGIPVVLDRLIQQSIAQVLTPIIDPGFSESSFGFRPGRSAHNAVRQVREYLRQGYRIAVDIDLAKFFDTVNHDLLMTIVGRKVRDKRVLALIGRYLRVGVEVDGRLEKTRMGVPQGGPLSPLLANILLDQLDKELESRGHKFVRYADDFIILVKSERAGERVMASVRKHLTHKLKLTVNEDKSQVARSDQISFLGFVFKGTKILWSDKAYKEFRRRVKKYTGRSWFVSMEYRLNKLSTYIRGWMGYFGISEA
>RTL_Chlamin_R
PASLHEVLQLAGLQQGYKDFLSLNKKAEALFKNGDYRAAFNIIGKMWVHPTIVPALLLVECFEARELIVPYWYQNIKLYRQDIQKKNGGVRPIIIAHKRLRICMSVINSLLQASCVSWSGNTFGFRPSCGTQDAVLHLAHKAKKMLNKQQQAVLVSFDLKAAYNSVHVEHLMQTLKLQCLPNDMKKLIWMWQHLPIAKQNASVHGLAQGYAYSPTVFAWYIDKLIGQHMDFTIYADNFCGVFANQQDAISAVQKAQALLKKSGLLIDPKSINMHLLHPHHDFAFSWLGHRIMFPSCTVKLHQHELVSKQNTPKVWTTRKWDYMLRTFGWVELVLDQGWRRF
>LINE-AP_L1_HUMANR
VESLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSTEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKAILSQKNKAGGITLPDFKLYYKATVTKTAWYWY
>Gypsy_JUNORT
YGKLLDLRKSSIIKGTVRHALETGNHPPVFTPPYRVSYKDERIRQEEINKLLKQGVIEESTSPWSSPIVLVRKKDGSVRFCIDYRKLNAITTKDAFPIPRIDDIFDHLSQAGYYTTIDFKSGYFQVGLDARDRPKTAFSTRDQHYQFTVLPQGVTNGPPAFQRIVSQILGPTRWKYALAYLDDVIIYSPTFDQHLVHLDDILNRLHEANFRLNVGKCHIAQTSIDYLGHHIEHGNIKPNADNIRALLETPQPATAKEAFRFVKAAEYYRKFIPKFSMIAQPLYKYAPTTKEQRSNKMPAVPIQLLDDELHAIHELKQILTNDLILRIPD
>TERT_Parameciu
KKRNQMIPLMKFMFQEIIIPFLRHNFYITERMKDDWKLFYYRKEIWHLILQLSLTSLTKNNFEEISVNSIKTPYVGKLRIVPKPGTFRPIVTYNRKAKTSKISLNRKLVDIKYILRNLRIQPLGYSVFGNPEVFSRLEEFKKLWIKLQQPKTYYITMDIQKCYDTIILQKLLQFIEESKQFSSIYAINKYHIVSRNNRMLKPSFSMKDLFNILDRTCAIPFNKPQLLQKGYIEHIQKNKQTIIINQGFQNSVTFSEFLNSIKNICQNNIVQFENRYFRQTLGIPQGLNISGILCSFYLANLEQKLTNKILGDTLIMRLTDDYCCLAFSQDSSIKILNNFTQIEKQYQIRLNHDKTQHNIERSDRYFKWIGKIIDIETLTLKPAFYLESDTKFQYQINVNLPTKVKTYYIKSKLKSLILNQFKFFFNSKLNDKPTMIKVLKIFVHSGLVKLISFLKRLKYNYGASKLRNQGKSIRLLKIIKEIKVEIAAYCVQQSRESNMEIDQEYLMRIIQKQLKKTIRNNS
>DGR_NOSTOC_DG
GNLYPQIIDFENILLASRQAQKGKRFRDNVLDFNYHLETELIRLQEHLKDKTYQPGAYRTFHLINPKSRLISAAPYRDRVVHHALCNVIVPIFERTFIADSYANRIGFGTHRALKKFTHFVRNSRYILQCDIRKYFPTIDHITLKELIRRKIKCLDTLWLIDAIIDNSNEQETVIDYFPGDDLLTPVTRRRGLPIGNLTSQFFANIYLNGFDHFIKEQLNISKYVRYVDDFALFSNDREFLADARFAIEEYLAQLRLKIHPVKSQLFETKIGATFLGFRVFSDRIRVRNSNLHQARRRLKRLKTDYAQGKIELKEVTQSIKSWVAHLEHGDTWQLRKQIFTSLCFRRK
>LINE-REL_SLACS
EQPGVVSVDAEEVAKTIARRLTRGAAPGLDGWTRELLYPLTLDPALKMEIAAVVKDIINADVSMEVGRRLQATSLTVLRKPNGKYRPIGAESVWAKLASHIAISRVMKTAEKKFSGIQFGVGGHIEEAIAKIRKDATKGSLAMLDGRNAYNAISRRAILEAVYGDSTWSPLWRLVSLLLGTTGEVGFYENGKLCHTWESTRGVRQGMVLGPLLFSIGTLATLRRLQQTFPEAQFTAYLDDVTVAAPPEELKNVCAATAEAMEALGIVNNADKTEVLELTGDTGFGTAVKACARVLGAYVAPDPMSEEIREGVKKKAMETDRLFKAIVELPLYDRTRWRILAMSAMPRITFLLRNHDMQHTHRVASWFDERTTQVMEHILGQPMTERARNIAALPVSMGGCGIRRMAQVAEYAHQCAGEKGL
>Group_II_intron_AI1M_YEAS
NNLLSIMKNVDMLMLAYNRIKSKPGNMTPGTTLETLDGMNMMYLNKLSNELGTGKFKFKPMRMVNIPKPKGGMRPLSVGNPRDKIVQEVMRMILDTIFDKKMSTHSHGFRKNMSCQTAIWEVRNMFGGSNWFIEVDLKKCFDTISHDLIIKELKRYISDKGFIDLVYKLLRAGYIDEKGTYHKPMLGLPQGSLISPILCNIVMTLVDNWLEDYINLYNKGKVKKQHPTYKKLSRMIAKAKMFSTRLKLHKERAKGPTFIYNDPNFKRMKYVRYADDILIGVLGSKNDCKMIKRDLNNFLNSLGLTMNEEKTLITCATETPARFLGYNISITPLKRMPTVTKTIRGKTIRSRNTTRPIINAPIRDIINKLATNGYCKHNKNGRMGVPTRVGRWTYEEPRTIINNYKALGRGILNYYKLATNYKRLRERIYYVLYYSCVLTLASKYRLKTMSKTIKKFGYNLNIIENDK
>DIRS_PAT_Panre
MEHAAFVTDEDEKLCSTGAAELVPSERLGDVKVISALSVSVNADAKCRLVMDLTTVNPYITANKIKLENVAIAKSLIPKSGFMLTFDMKSGYHQARMADSELIYLAFRWEGKTFWMKALPFGLSSAPEYFTKLFRHPLATLRGDGVNCLLYLDDLLVWSETYEGACEASAKVRALFGKLGVVLNNEKSSVTPQREVKWLGVVFNLTHGTLKISKNRIENALAAAARLLNRKRPSAKDRLKFTGALNSMHDVLGPMAAIRTKSLFCFIASVTPRLGVRLALSEREKADIKYWQRNLVERNVWRIQDTR
>Caulimovirus_CsVMV
GENPLEKWEKHKTLAKIELKNETDNIYKPPMLYQETDLPEFKMHIEEMIKEGFIEEKTNFEDKKYSSPAFIVNKHSEQKRGKTRMVIDYKDLNKKAKVVKYPIPNKDTLIHRSIQARYYSKFDCKSGFYHIKLEEDSKKYTAFTVPQGYYQWKVLPFGYHNSPSIFQQFMDRIFRPYYDFIIVYIDDILVFSKTIEEHKIHIAKFRDITLANGLIISKKKTELCKEKIDFLGVQIEQGGIELQPHIINKILEKHTKIKNKTELQSILGLLNQIRHFIPHLAQILLPIQKKLKIKDEEIWTWTKEDEEKIKLIQDYSKNLVIKMKYPINK
>LINE-REL_R2_BM
YTQLWKPISVEEIKASRFDWRTSPGPDGIRSGQWRAVPVHLKAEMFNAWMARGEIPEILRQCRTVFVPKVERPGGPGEYRPISIASIPLRHFHSILARRLLACCPPDARQRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVVMDLILASLPERVGYRLEMELVSALAYADDLVLLAGSKVGMQESISAVDCVGRQMGLRLNCRKSAVLSMIPDGHRKKHHYLTERTFNIGGKPLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLD
>TERT_Eupae_TERT
FYYFDHENIYVLWKLLRWIFEDLVVSLIRCFFYVTEQQKSYSKTYYYRKNIWDVIMKMSIADLKKETLAEVQEKEVEEWKKSLGFAPGKLRLIPKKTTFRPIMTFNKKIVNSDRKTTKLTTNTKLLNSHLMLKTLKNRMFKDPFGFAVFNYDDVMKKYEEFVCKWKQVGQPKLFFATMDIEKCYDSVNREKLSTFLKTTKLLSSDFWIMTAQILKRKNNIVIDSKNFRKKEMKDYFRQKFQKIALEGGQYPTLFSVLENEQNDLNAKKTLIVEAKQRNYFKKDNLLQPVINICQYNYINFNGKFYKQTKGIPQGLCVSSILSSFYYATLEESSLGFLRDESMNPENPNVNLLMRLTDDYLLITTQENNAVLFIEKLINVSRENGFKFNMKKLQTSFPLSPSKFAKYGMDSVEEQNIVQDYCDWIGISIDMKTLALMPNINLRIEGILCTLNLNMQTKKASMWLKKKLKSFLMNNITHYFRKTITTEDFANKTLNKLFISGGYKYMQCAKEYKDHFKKNLAMSSMIDLEVSKIIYSVTRAFFKYLVCNIKDTIFGEEHYPDFFLSTLKHFIEIFSTKKYIFNRVCMILKAKEAKLKSDQCQSLIQYDA
>LINE-AP_CeL1_RTE
ATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTPKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVEQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIYFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECYKNCTTNFAPFHRPVTVPVTKGVRQGDPISPNLFSACLEHVFRKLSWIELKGEAEDYDTIPGMRVNGRNLTNLRFADDIVLIANHPNTASKMLQELVQKCSEVGLEINTGKTKVLRNRFADPSKVYFGSPSPTTQLDDVDEYIYLGRQINAQNNLMPEIHRRRRAAWAAFNGIKNTTDSITDKKIRANLFDSIVLPALTYGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTLSLVRDPLNFVKKRKLGWAGHVA
>Retron_MX162_MYX
EDRLADAFDVPHREERARANGLTELDSAEALAKALGLSVSKLRWFAFHREVDTATHYVSWTIPKRDGSKRTITSPKPELKAAQRWVLSNVVERLPVHGAAHGFVAGRSILTNALAHQGADVVVKVDLKDFFPSVTWRRVKGLLRKGGLREGTSTLLSLLSTEAPREAVQFRGKLLHVAKGPRALPQGAPTSPGITNALCLKLDKRLSALAKRLGFTYTRYADDLTFSWTKAKQPKPRRTQRPPVAVLLSRVQEVVEAEGFRVHPDKTRVARKGTRQRVTGLVVNAAGKDAPAARVPRDVVRQLRAAIHNRKKGKPGREGESLEQLKGMAAFIHMTDPAKGRAFLAQLTELESTASAAPQAE
>Retrovirus_MoMLV
FPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEAKLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDILLAATSELDCQQGTRALLLTLGNLGYRASAKKAQLCQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQG
>LINE-AP_JOCKEYRT
MSLPLSAVTLEEVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLALIFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLLYKAKRLFPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAEKCANVTFANRTGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYMERLN
>RVT_Pleurotus
VQLQHERITAADMSWTIQSALSSDLMNEAKRATLKEMAASTVVLEELASVLTMRLADLESWTWPADGILVDMRRALNGKYRAFTDPDILDGLFLEYIGVKWQITFKAAFQSVFSSKLWKPSIPFIPRKELEHRRQFINASEETFRGSLESSRVDNRKNHFFMSQLTNSTARRHYDDGEGEESGNQTLQAIQIKQRLIHVMMTDCLLNTALHKTHTVVRSDFEWFGPSLPHDSMLATLEYFGVSKSWLKLFKSFLRGPIRFQQDPSGVVRVRERGTPVNYSISQLLGEVLLFGMDFAVNQRANGLYLYRLHDDLWLWDPDQERCEAAWAEMSKFASITGLKFNEKKTGAARVGGELSAKLPRGDVRWGFLKFDVEQARFTIDQEDVTPHIVELKRQLAATKSVFGWVNVFNRYMAFFRRNFGGRPPACFGQPLIEDIIDTFARIQRELFPDHVGGAIGYLQSLIKTRFGVDNIPEGYFYFPITQGGLELRNPMIEAYALQKSDRATDRANERENSDG
>LINE-REL_SLACS_Lbr
PQTPFPHGLKPEKVRNVVLKRLGRAAAPGLDGWTRELLVPVVENAALLAETTALMQDILAGNVSASFAFRLRACVVHPFLKEPGSPKVRPITPESVWLKIASHLALDAVEKPFRDIFQGWQFGVWGDAAEAVAQIRETYASESADTLVALDATNAYNRVSRAWVLRAAFRHHALRHTFGVVDLSLGEPGALGVYEGGRRVEQLWSTRGVRQGMVLSPLLFATAVAETLRPIMAAHPLAKVTAYLDDLTVVGPRAAVQAFLDEAGPALAATGFDINPAKSHHLSKSAAPEPVSVAGVAVPLASGVVRILGAGFRGSGAPVDEWVWEKTRPYEAYFTALGGDELPRHARMNLLRASALPRLTFLLRTHSADELRDSAAWFDDRVLHTLSVLAGGAPIEGAAAPPFASSPLPWADAGCGRSWPSRASRRTA
>Retrovirus_Spumavir
MNTPVYPVPKPDGRWRMVLDYREVNKTIPLTAAQNQHSAGILATIVRQKYKTTLDLANGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEIPNVQVYVDDIYLSHDDPKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITKEGRGLTDTFKTKLLNITPPKDLKQLQSILGLLNFARNFIPNFAELVQPLYNLIASAKGKYIEWSEENTKQLNMVIEALNTASNLEERLPEQRLVIKVNTSPSAGYVRYYNETGKKPIMYLNYVFSKAELKFSMLEKLLTTMHKALIKAMDLAMGQEILVYSPIVSMTKIQKTPLPERK
>RVT_Ustilago
HSDHFASFDQEAVRSAIDQVLSNDLYAGDKRTKLRDLTAHKNVLTEIADILNQDLEQLNTWQWADGGVQMSMRRHINGKYRVYMDEEVYQAIFLAHIGSIWSDCFHTHFMRFFDHSWKHGAGRQLTKEQQRFRNRRFQRIDENADPSGTSSIHRLRKKHYQDKFWLSAISPNMRESLTAAYEDDSEGRQHDNHSLSFADIKQQLLRMITAEQLIQCDLYGHFTILQSDFRWFGPSLSHTTILTVLKFFGMPRKWLDLFAKFLSPSISFAADGAQAQRRVRTCGMPIAHQLSALFGETVLFALDFTINQATEGGYLYRIHDDLWFWGRQEQCAVAWKTLQEFSAATGLQLNMDKTAACTLQSTTASPLFDEDRQELPAPSKVDTTSTSDAILPWNPIRWGFLVLSADKGCWDIDEVKLEEHVDEMRVQLDATGSLMSWVRVWNSYMGSFFGNNFGKPAVCLGKEHIRICMRAFETVQQRLLQAAGRHANLTDTVAAMLEARFGKQQQGVQASLIYFPAELGGLAVQNPLMALSNKLLVEKQETSQEIVQKAW
>RVT_H_AURANTI
EPDEIDSDTLCAILRRIAKDSFYSAATRSEARQILGDPIMRKELADALMIVRTQLADWRWPKSGVTAVAQFARTKWRLFLQEDLLTACLHHVVAEHWQEYFAKFCRVNSSLPLKKLKRIAQDRGYDRDLNKLIAESYAVSKSVNLWHTLRRPLALDAAEQLELYGNPQSIFASRAAEITRLQQWSQLAEYDSNYEHNLEVALRLINAEIQLGLHATPDQAIYVLKTDFRDYYPSLNQQFVLDVLQRMGLSQQQIGFFAEYMAVPLQVNQQATQQQIGIPNHRPISDILGELVLRLMEQYLELHAHVQIVRFVDDLTIIATDPDEMRKAWQALQTWCTSCGLNLNEQKTGAMAINDQLPSELPHQAPHWLFLTLDAQGTWQLDHSLIGEYINQTAQTITNTPAILNKIEVYNGACTYLCQAIGLRVNLGASHREQVRTTLWRYGQQIIQQGSMVAYIGDLIHQRLNNSVSLPEGWFHWPITAGGLGIQQPLIIAHSYQQAWQAATAPSVPTERLAWWQ
>DIRS_Kangaroo
QELAPERGRKLAIVREMLRVAAPDCDLDFMMAGDRPRAVQFPNHRSATQHHEFVTAELRKALDRGVIREWPADAPSPTVVNGLRVVEKDGKLRLCINPMYINCFLRYRPVKYERLAEVPSYLLPEDWLYTTDDKSGYWQLSLHEREHTYLAMRWRGQTLFWPHLPFGLAPACHLYTSMKLEVFRPLRQLGVRMSFLIDDQMGAAGSKAAAQFQCGAVVRLLAALGFTLSLSKCQLIPRRRVRFLGMEVDAEAQAFRVPDDKLARFRALLTQLEGERLTARQVAQVAGKIIAMTPAVTTAPLYARMVWRVARDVAWDEEVWDSAEVLRQAGLFMELLGRRNGTATWRKGPALRLTTELV
>Hepadnavirus_HBV
FEKHSSSGHAVELHNLPPNSARSQSERPVFPCWWLQFRNSKPCSDYCLSHIVNLLEDWGPCAEYGEHHIRIPRTPARVTGGVFLVDKNPHNTAESRLVVDFSQFSRGNYRVSWPKFAVPNLQSLTNLLSSNLSWLSLDVSAAFYHLPLHPAAMPHLLVGSSGLSRYVARLSSNSRIFNHQHGTMQNLHDSCSRNLYVSLLLLYQTFGRKLHLYSHPIILGFRKIPMGVGLSPFLLAQFTSAICSVVRRAFPHCLAFSYMDDVVLGAKSVQHLESLFTAVTNFLLSLGIHLNPNKTKRWGYSLHFMGYVIGCYGSLPQDHIIQKIKECFRKLPVNRPIDWKVCQRIVGLLGFAAPFTQCGYPALMPLYACIQSKQAFTFSPTYKAFLCKQYLNLYPVARQRPGLCQVFADATPTGWGLVMGHQRMRGTFLAPLPIHTAELL
>RVT_AV_111A10
RKVTATDINRAIQYLLAGDSCDERRKSTLKEMQMNQVTLEGLASLVNALIADLSKWKWPVSGVRGVFRRNFAAKYRCFYQEDDVTAVFLQYVGLQWSYHFKRELRNLFDVLSKNTEVECSSDSIEKERLKRQRNFWMGTLPDEEGDSNDYGDGNYSAVGLKETVLDLIHVEIDLHQTLYPETPLTVVCADVEDFGLLISHEVIQTFLQQCDVPQIWLDFFDRFLKQQVYHQAEDPVRQRQRGVPIAHSVSYLMSELVLFGMDLYVYQNTGIFNYRLHDDFWFFDSQLSKIDQAWTLMKEYGNIVGLTFNKEKCGSTQILPLNTATPPTLLIVGASLPENDVKWGLLTLQKNGQFTPDQRRITPFLNEIKERLSSVRAILEWIKVYNSYMAFFMHHFGRYANVLRARHFEGIVATLRYIHQNLFSENNSSALNTLTHLITERFPECLSGEMIEAWFYWPLKKGGLGIKNVYVDLLSDFEYSPDETTITFAALLAK
>DGR_Chlorobium
MKRKGKLVEQIADLHNLYEAFYKAQKGKQAKRYVCAYRKQLQENLQLLRHQILSGAIQTGKYHAFTIYDPKERVICATPFSQRVLHHAIMNVCHPFFEKHQIAGSFASRKGKGTYAALDKAREYNCCYRWFLKLDVRKYFDSINHTVLQKQLTRLFKDKTLLLIFEQIIDSYSTADHKGVPIGNLTSQYFANHYLSVADHYAKEGLRVPAYVRYMDDMVLWHNEKEELLAMGYMFQTFIAKELLLELKPFCLNATHKGLPFLGYLLFENQARLAPRSKKRFLAKYQRYENNLQSGVWTQQEFAKHALPLFAFTEYAQAREFRKKSLHSFCSLEGVFVRSSKGID
>RVT_NCRVT
ANWSHPFTVLQVKVCIQSILRSNNITGEKRSTLRDFLNNSVVLQEIADVLNMRMDARASWTWEAPVVVEQRRALNGKYRFFLDEDLLHSLLLEYIFRRWAVLISQHFGRFTATAGVWKPDTKPMSKQDARRRQFFLDEKNPLSKVDSVAHEREDYFHDKILLDHLPEWMSEVRGGYDSSEADSKEDTRDSPLRVVQGLMHRLEADILVQTHMGNELTVLRSDFRWFGPGLPHSSIFAVMEFFGFNEEWLDFFKRVLEAPLRFKGDPNPDTPFGTRKRGTPISSTISDVVGESLLFCLDFAVNQKADGTLLYRLHDDMWLWGTTEKCSKAWKVVTEFSEVMGLSLNEEKTGSATIHPKNKKVGLESTKEEETAKISHNLPTGPVTWGLLKLNASTGHFEIDESKVDEHIDELRRQLGACQSVFDWVQAWNIYGDRFFTNYFGRPATCSGRAHVDSMLAMFARIQQKLFPDHAGGVGAYVKDMIASRFGISSIPDGYLFFPTSMGGLGLRNPFVSLFLIRDDLEKTPEEMLADYE
>Gypsy_Nosema_pol
YLPYTEYQSWDDMLENFKSTNPKLGRVEGRELSIPLTCQVPVNERPYPIAMAFLPKVEEEIDRLLKLKIIRKSNSVYASPAFAVPKKEVKIRLVVDYRKLNDKTLKLGYPFPNIQYSLMDLKGSEKFSQIDLNMGYHQIPVKEEDVYKTAFVVPFGHYEFLRMPFGYSNAPREFQRVMTDIFSDLPFVKIFVDDILIFSRSEEEHYDHVLQVLQRCRDENLSINFEKSSFKKKEVKYLGKIISKDGVRADITSVVKLENIPHPTTKKDIMRLLGSANWFREHVPNLSQHLLPITDKLRLDRKVDWTENDTKTLNTVIDLIKENTILHHPD
>RVT_P_ramorum
RGEIPITEEDVKCCVAALLRNKDFLNPDVTALFTDAQRNKQVMKELSQVLTIELSNVSEWRWPEEGVHVDIQRGMNGRFRCLLQEDAITLLLFQYIGLKWSIEIKAVLRALLDSLSDDPRMSGLTSVESVRADMMRRFQLFALPESMKDGGRGPYDEDDSASDDGDDEDQKSDKQDIIRRVLAEAHLQKILASEGKEPSPLVAVMTDLEFFGPSVAREAVFACLRFLGVHDDMLSVFRRYTQIPLIFPGFTKPKSMQRGLPVSRMMTMLLAEVELFVMDYLVLASSDIFLYRSHDDICFFDADEAKVLRAWKEMQRYARCVGLKFNEEKSGSICLNAGSNTTEAKVGPAPLPATPIRWGLLELRSNGSVDIRQDEVEAFATEMADRLAAATSAFAWINVYNKYMFFFLRNFGNPSPIFGLSHIDEALSTLRRVHKLVFPKTDGDALGYLREQIMRRRQSPGPAMPAAWIYWPLNLGGLGLCNPFLAIWDVKESLFTYLSTYHTRIDREWP
>PLE_Penelope
HKTKNNQNSRDRAILDTVEQTRKLLKENINIKILSSDKGNKTVAMDEDEYKNKMTNILDDLCAYRTLRLDPTSRLQTKNNTFVAQLFKMGLISKDERNKMTTTTAVPPRIYGLPKIHKEGTPLRPICSSIGSPSYGLCKYIIQILKNLTMDSRYNIKNAVDFKDRVNNSQIREEETLVSFDVVSLFPSIPIELALDTIRQKWTKLEEHTNIPKQLFMDIVRFCIEENRYFKYEDKIYTQLKGMPMGSPASPVIADILMEELLDKITDKLKIKPRLLTKYVDDLFAITNKIDVENILKELNSFHKQIKFTMELEKDGKLPFLDSIVSRMDNTLKIKWYRKPIASGRILNFNSNHPKSMIINTALGCMNRMMKISDTIYHKEIEHEIKELLTKNDFPPNIIKTLLKRRQIERKKPTEPAKIYKSLIYVPRLSERLTNSDCYNKQDIKVAHKPTNTLQKFFNKIKSKIPMIEKS
>RVT_URRVT
TNPLVTRPELKACIKSLLRNDLLNDEKSATLTEFLRDDTVLDEIANVLNLRYANLANWTWNLGDNGMPVEPRQSLNGKWRVVMDEDVLQSLLTHFIGNRWCVFLKRRLQGLIRNATVWSKGQAISERDLALRRYYLQESKTPGEPSLDEERFEVYNEHFFLAPMATREFSDTGKLSPKETKQLLLRSLATEVLFGRAFDGEVAVVQSDFQWFATGIAHSTVFAVLRFIGLPEKWIEFFKKVLEPPLDMLTGEPVRIRKRGLPMVHIFEKVFGELVLFFMDMAVNQQANMLLYRIHDDLWLCGKPDKCAKAWQAMEQFAKVMGLEFNQSKTGSTYLVGEGQQRNLDVVKALPKGPVVVNFLVLDPTTGEWVVNQNHVKQHVEQLSKQLNAANSVLQWVKTWNTCIGRFFSYTFGEPADCFGRKHLNAILATHQTIQRTLFNGLNGNGSNVVEHVKKMIASRFNVTDIPDAFLYMPEALGGIGLHNPFVPLSLVSPNICEDPGELIHEFL
>Retroplasmid_MAURICEVI
ARDKGDAKEYWRLGRSLMKNEAFQVQAFNHVCKHWYLDYKPHKIAKLLKEVREMVEIQPVCIDYKRVYIPKANGKQRPLGVPTVPWRVYLHMWNVLLVWYRIPEQDNQHAYFPKRGVFTAWRALWPKLDSQNIYEFDLKNFFPSVDLAYLKDKLMESGIPQDISEYLTVLNRSLVVLTSEDKIPEPHRDVIFNSDGTPNPNLPKDVQGRILKDPDFVEILRRRGFTDIATNGVPQGASTSCGLATYNVKELFKRYDELIMYADDGILCRQDPSTPDFSVEEAGVVQEPAKSGWIKQNGEFKKSVKFLGLEFIPANIPPLGEGEVKDYPRLRGATRNGSKMELSTELQFLCYLSYKLRIKVLRDLYIQVLGYLPSVPLLRYRSLAEAINELSPKRITIGQFITSSFEEFTAWSPLKRMGFFFSSPAGPTILSSIFNNSTNLQEPSDSRLLYRKGSWVNIRFAAYLYSKLSEEKHGLVPKFLEKLREI
>Group_II_intron_COIIA_POD
VNLYQLICSKDLLIQAYRNVRSNPGGMTPSIDNITYDGINDEFLEKLILELKSERFKFTSVKRVYIPKANGKTRPLGIPTSKDKIVQEAMKILLELIYEPIFLDVSHGFRPKRSCHTALHQISKWNGTTWMLEGDIKGFFNEVDHQVLIKILEKKIKDQRFFDLLWKLFRAGYIDDGVKYNTYTGVPQGGVISPVLSNIYLHEFDLFVETLIKKYSSEKDFISKVNPVIVKYSSKLSRLNDEYQTTKDKEILKEIIKLRAERNKLPSRIRNGIRVRYTRYADDWVIGIIGDQELVAKIKEECKAFLRDILKLELSEEKTKITNITEKEVRFLGVDIKRKDSGESKIIQRQVKGRLIKSRINNNRLYFYVPVRDIINKLEKAGFIKTYTSANGREKLAPNAITKWIFLDHRSILLRYNAVIRGLLNYYSFVDNKIAFHSIVNFLIHHSCAKTIARKLNLPNRAQAFNKFGRYLTAPGE
>Group_II_intron_Leptospiri
WEQIPWKKMEGNVRKLQTRIAKAHREGKPGKVNALQRKLTRSLAAKCFAVKRVSENRGKNTPGVDRIVWKTPGEKLRAALSLKRRGYTPLPLRRILIPKKNGKQRPLGIPTLFDRAMQALFTMALIPIAESSADPNSYGFRPYRSTADAIAQCFIVLSRQISPQWILEGDIVGCFDNIDHEWMMTHIPMDKETLRKWLKAGYIYNRTLFPTQAGTPQGSIISPCLSNMVLDGLERILKERFSQKDKVHFCRYADDFIITGSSKELLEQEVRPAVEQFLRERGLELSPEKTRIVHIEEGFDFLGANIRKYGKKLLITPSRKNTASFLDKVRTIIKGSKAIAQKDLIQILNPIIRGWANFHRHIVAKQIFKWVDLQIWEGLWEWATRRHPEKGAYWVKDRYFRRKGPRDWVFTPPNGKGPELILTSATPIRRHIKIRKDANPFDPAWTGYFLDRKSRKEPQPDSWRNIGLSATSPKVLLL
>LINE-REL_CRE1
DTSEVLRAKEQKVRRAIAARMGRGTAPGLDGWTRELLLPLAEDPALLHEITSVVSDIMQGKVAEVVARRRSSAVTPIPKDEAGTKIRPIVPESAWLKLASLVAMAEIPSSFKETFKGWQYGVWGDVAKAVAKIRRDSEEHEYLVALDGVNAYNTMSRAHILQAVYAEQRLKPIWGVVKVALGGPGFLGVYRDGCLKGNLWSTKGIRQGMVLGPLLYATGMAAAIGPVRQRIPGVPVTAYIDDITLAASGAEGARAAEAYADALETVGVVTNARKSMVVGPEGTRVGIGGVDLPVVAEARILGAHFRARGTPEARTIEWLQAAVEKWRPIHQKLRQDIIPKNIAMMMTRISLGSKMTFLLQTHSPQELETAAKTADDEVEQTLQHLMGQVEITPRARLLAQLPIREGGLGLRRSSEIAKFAQADVGQGEA
>PLE_Poseidon
KVSAALANAKPPASNITALEKRALASLAKDKDITILPADKGRCTVVLNTTDYDSKILNLLGDSNTYEKLKRDPTSTYKKKVIDLLQKLEKEQAINKPQYYRLYPGEATPCFYGLPKIHKEGTPLRPIVSSINSVTYNISKFLASIMAPMVGNTPHHIKNSQDFAEKVSNLQLESGETMVSFDVTSLFTCIPTSEATEAIHKHLLLDKNLQDRTALSPAQICTMLDLCLNTTYFQFRESFYRQKHGCAMGSPVSPIVANLYMEEVEKRALSSFTGAAPSRWFRYVDDTWVKIQTKEVEKFTTHLNQTDTFVKFTREDVKGNSLAFLDCEIRIEEDRNLSIEIYRKPTHTDQYLLFDSHHPLEHKLGVNKTLQHRATKVPTTSQGRKKEQDHLTTALKTCGYPDWAFTKTRKKRVPSNEEEKDKRHSVSIPYMAGVSEKFRRIFQKHNIPVQDVCVGYDDDSSAIQTLQHP
>LINE-REL_CRE2
SETPFLHAVKPERVRAVITKQLGRAAAPGLDGWTRELLVPITEDKGLLTELTALVQDMLVGNVHPSFATRIRACILHPFRKEAGSAKVRPITPESALMKLAAHIALDSVEKSFRSTFKGWQYGVWGDSTEAVKRIREAYAEASSDTLVALDATNAYNRMSRRHILEAAYAQPELRFAFGVVNLSLGAAGELALYENGAKIHALKSTEGVRQGMVLSPLLFANAMSGIIRPLMEMHPRVKVVAYLDDVTLIGPHAAVQDFLAEAGPQLSRVGFDINPAKSHHLAKLEVPEALSVSGRTIPIAQGVVRILGAGFRGDTASVEEWVWEKTKTHDHYFEKLQSEWLPRLARLQLLRGSTVPRLNHLLRTHKPEELNRSTTWFDERVMETALNIANIGDRRNADDGDPGHTPPDPLRETRLLVRLPMAMGGLGLRSQKPIAGFAAECVGTKNA
>PLE_P_chryso
KGDKFVDEYISNVMPSVKATSRSLNLVWLDELKDYLSANKYIVSPSDKNLGVCILQADWATDQTRTLWNDPSNYRKLGSLLEADEIMEEKHERIFRAARLARRLGKRQLAEFLVSKIHGKDAKTAGYTLGQFYGVPKVHKRPVKMRPIVPCHSVSQAPSATYVSKMLKPLVSRQPHVIHGSKHLVRQLESLQLDKHRKAWIVSGDIVAFYPNIPLENCIRVVTQMWRNSPEAEKLSPEERQLFLMSFMTANKRLVIQFGDEYAEQIRGLAMGIACSPDLANLYGSHYENPILARPDMKSKFAFFGRYLDDVLGIVYASSAEEAMSYANEIRYDGVEIEWSVSEYHTPFLDLFLYLDPVEKRLHWKPYSKPLNHRERIPWASHHPKDVKKGTFIGEMSRLATLCSKLEHYRDAISDLSNLYLARGYPDDAVRSWVKAHFSQRWERRLGEPIVRDEVFVLKSHFNPAWSAFNVHGLSEVVVESWLSSLSKLDGANQSQDRTWHAAESTDGSELKIFRQTTLGQFQG
>LINE-AP_Ifac_Dmel
AQTIEENITYLELSSALQTLKGCAPGLNRISYQMIKNSSHTTKNRITKLFNEIFNSHIPQAYKTSLIIPILKPNTDKTKTSSYRPISLNCCIAKILDKIIAKRLWWLVTYNNLINDKQFGFKKGKSTSDCLLYVDYLITKSKMHTSLVTLDFSRAFDRVGVHSIIQQLQEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSPLPLFNGIPQGSPISVILFLIAFNKLSNIISLHKEIKFNAYADDFFLIINFNKNTNTNFNLDNLFDDIENWCSYSGASLSLSKCQHLHICRKRHCTCKISCNNFQIPSVTSLKILGITLNNKYKWNTHINLLLPKLHNKLNIIKCLSSLKFNCNTHTLLNVAKATIIAKLEYGLFLYGHAPKSILNKIKTPFNSAIRLALGAYRSTPINNLLYESNTPPLEMKRDLQIAKLSQNLI
>Retrovirus_RSV
TVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLVVGQVLEPLRLKHPSLCMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKVQREPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVQLSTTAALERWDPALPLEGAVARCEQGAIGVLGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPACFREDLPLP
>DGR_B_LONGUM
MFVRRAIDHYLKGKRSRRDVTRFLDTHPDLDRLAERIGDEIREGRYRDTRITYFNRIEPISGKHRVIGRESVRHQIYDHVAVMALQPLFDAKVGRWQTASIPNRGTIDARRAIKRWTRERSSKWFVKLDVRKYYPSIDRTTLKAMLTRDVGDPILLRLVFHLIDRYQGGNGLNIGSYLSQWLANYYLSHAYHWIESPAMTIERISRRTGEITRRRLITHQLWYMDDLLLIGTSKRDLKIAARRIVHYLKDRLGLDVHEEWNCKRLDLEPIDMVGYTFRPHGRVNIRSGVFLRARRTFSRAARRPMNEYMARRCCSYYGYLRNSDSIQYRRRHRIDSTMRRATRYLSA
>RVT_Phypa_Rvt
RNSFKIRDLESTINSLLVADLLSNDKRGTLKEFLSNKTVLTEVADVLNMHLAALPSWSWIPEGSSTDAIAVEMRRQLNGKYRIYMDEEILQAIFLHWIGLQWAAKFKHWFNKFARSSAWKLPHKPLTKVENERRQYFLNEDPNDWKDREYSEFKSVDQLRHAEHMKSFFMSQLPESLEDGARPYDDGEGEENKTDKPSAVAIKQSLLHILVTECLFNTFLYNKFTVVRSDFSWFGPSLPHSSILATLKFFGVPDIWLTFFKKFLSAPIKFVADGPMATTQIRKRGTPMSHSLSDLFGEVVLFPMDFAVNQRANGLFLYRIHDDFWWWNKESQPCVEAWQEMNNFARIVGLEFNNEKTGSVSVGEPLHPDLPVGTIKWGLLKFEETGQFVIDQSLVDAHIEELKLQLKACNHSVFAWVQAYNKYMTSLVNNFGSPPACCSGQRHVDMVISTLQRIQLALFPEHGGSVIDYLATVIQERFGVHDIPAGWFMWPIAMGGLEVKSPFISQLCLREGLPEDPKQVFDTALEAE
>DIRS_DIRS1
PIPISIPEGPKSDCITKEVQDLLLDDAIEQVLPNHYSKRVFYSNVFTVPKPGTNLHRPVLDLKRLNTYINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLSTAPRIFTMLLRPVLRMLRDINVSVIAYLDDLLIVGSTKEECLSNLKKTMDLLVKLGFKLNLEKSVLEPTQSITFLGLQIDSVSMKLLVPKEKKKSVIKEIRNFLKLDCCSPRKLAGLKGKLIALKDAVIPFRLYTRRTNNFHSQCLTLANGDWDQSFPIPQDVKSEISHWLIVLNQWNGKEISLFPSY
>LINE-REL_DualenCR1
HSMLPSMADTANFEQCISHLSRNKATGPDGIPNELLRILPSGMKRNLHCILQIMYVKSQIPETWAASETVLLPKPGDALDIKNKWPIALANTCYKLYTSMLTLGIGELAGPLQLFSEAQEGFCAYCNTERQVLNLVHALEDAALFGKDVYAVYVDYSSAFNTIDQDRLLQIMFDLGLPTDLIRAVRNLYAHATTRIRTEHGSTSAIPIERGTVQGDTLSPVLFILFMEPLVRWLHAGGRGYHYGCLTPSENLQYHCSAAAYADDLAALTNSLDDLQVQCDKIASYAEWASLRVNHTKCATTAIWHDKSRSDPNLDGPTGKATLAAMRRNMTNTIKIGTTPVPYFPPTQPYKYLGVQLTFSLDWSAHVARVTEIVKDKGTAIATSLATPAQRLRMIQQCVHTTVAYGFAAMPFTKQDITTLDTTLAGYAKRCYGLPRSFPTRTSLLPANEYGLGLGSLLPQYARVAQRALVLAL
>TERT_Schpo_TER
FEKRKQIFAEFIYWLYNSFIIPILQSFFYITESSDLRNRTVYFRKDIWKLLCRPFITSMKMEAFEKINENNVRMDTQKTTLPPAVIRLLPKKNTFRLITNLRKRFLIKMGSNKKMLVSTNQTLRPVASILKHLINEESSGIPFNLEVYMKLLTFKKDLLKHRMFGRKKYFVRIDIKSCYDRIKQDLMFRIVKKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQLLSMKTSDTLFVDFVDYWTKSSSEIFKMLKEHLSGHIVKIGNSQYLQKVGIPQGSILSSFLCHFYMEDLIDEYLSFTKKKGSVLLRVVDDFLFITVNKKDAKKFLNLSLRGFEKHNFSTSLEKTVINFENSNGIINNTFFNESKKRMPFFGFSVNMRSLDTLLACPKIDEALFNSTSVELTKHMGKSFFYKILRSSLASFAQVFIDITHNSKFNSCCNIYRLGYSMCMRAQAYLKRMKDIFIPQRMFITDLLNVIGRKIWKKLAEILGYTSRRFLSSAEVKWLFCLGMRDGLKPSFKYHPCFEQLIYQFQSLTDLIKPLRPVLRQVLFLHRR
>LINE-REL_DualenCR4
HSLLPNVSDASNFQRCMQSLSRNKSPGPDGLPNELLKCMPDALQAAVHTLLCVAWIKAELPDGWSTSDTILLYKKADPLSISNYRPIALCNTLYKLYTSLVTRAATEACTELLVHSEAQEGFQKYKGTERQIMNLLHVIEDAALTKRDLYVAYIDFSNAFGTIDHDRLLTVMHHLGLPTDFIEVVRNLYSTANTTIRTAHGRTSPVQIRRGTMQGDTLSPLLFIIFLEPLLRWLHYGGRGYRYGCLTNSENDQHNCSSLGYADDLALAANSRDNLRCQTDKIARYAAWGGMRINRDKSACTGILHSFASANSSDKSMKGPACERTLKRFLDGQIHIGSNVKDGKLTKIALPYVSPHKSYRYLGVEITMTMDWRPQLKAVKTDLTDAGEELSKYKKLPRQCYMLIKQCLKAKVAYSLPAMAYTQHDIRALDAQIAGITRRCVGLPRDCATRAILLPAEMGGLGIGSLREEYVQRASRLLMISL
>LINE-REL_NeSL_1
SCQSTLSPIDTSPITIASTILKLKPKIGYSQDNINFFVIKKCSDSITIPLSLIFNEFLTSKSFPSCWKTSIVVPVYKKGNSSDPKNFRPIALTHPLSRLFERIVLNPIMKTFSPKISKFQFGFLNNRSCTTALLNASSIYHKILADPNQYIDIVLFDFAKAFDSVPHELLLSKIRNFGVDDNLCAWFRSFLSNRVSKVKIGDCLSDSSYKNSSGVLQGTVTGPFLFLIYINDILEQFPPDVHAMAFADDLKLFSNNCKSLKSSISLIEAWCTKWQLNLAENKTNVLHIGKKNPKCEYYVNGQKIHSCSKARDLGIWIDDRLAYDKHIIIKVNAAMFKCRQILKNFQSLNMPFYFKLFNIYIRPILEYGCEIYHPKSSSLSAKLEQPLRFYSRHVFKRCKISYDSYDHRLIQADQSSLEHRRILLILK
>TERT_Ratno_TER
HRLRERILAMFLFWLMDTYVVQLLRSFFYITETTFQKNRLFFYRKSVWSKLQSIGIRQQLERVQLRELSQEEVKHHQDTWLAMPICRLRFIPKLNGLRPIVNMSYGMDTRAFGKKKQTQCFTQSLKTLFSVLNYERTKHPNLMGASVLGTSDSYRIWRTFVLRVRALDQTPRMYFVKADVTGAYDAIPQDKLVEIVANIIRRSESMYCIRQYAVVQKDSQGQVHKSFRRQVSTLSDLQPYMGQFTKHLQDSDASALRNSVVIEQSISMNETGSSLLHFFLRFVRHSVVKIDGRFYVQCQGIPQGSSLSTLLCSLCFGDMENKLFAEVQQDGLLLRFVDDFLLVTPHLAHAKAFLSTLVHGVPEYGCMINLQKTVVNFPVETGALGGAAPHQLPAHCLFPWCGLLLDTRTLEVFCDYSGYGRTSIKMSLTFQGVSRAGKTMRYKLLSVLRLKCHGLFLDLQVNSLQTVCINIYKIFLLQAYRFHACVIRLPFGQHVRKNHAFFLGIISNLASCCYAILKVKNPGVSLRAKGAPGSFPPEATRWLCYQAFLLKLAAHSVTYKCLLGPLRTAQKQLCRKLPEATMTLLKTAA
>Retron_EC107_ECO
MDATRTTLLALDLFGSPGWSADKEIQRLHALSNHAGRHYRRIILSKRHGGQRLVLAPDYLLKTVQRNILKNVLSQFPLSPFATAYRPGCPIVSNAQPHCQQPQILKLDIENFFDSISWLQVWRVFRQAQLPRNVVTMLTWICCYNDALPQGAPTSPAISNLVMRRFDERIGEWCQARGITYTRYCDDMTFSGHFNARQVKNKVCGLLAELGLSLNKRKGCLIAACKRQQVTGIVVNHKPQLAREARRALRQEVHLCQKYGVISHLSHRGELDPSGDLHAQATAYLYALQGRINWLLQINPEDEAFQQARESVKRMLVAW
>Retroplasmid_PFOXC2
RIVSAIEAGEIRVLVWLCLMKVSRSYQILLFNRVCKGWYWRWSTARVEEIIFGAMNKMRSWDMKLLIHRFYILKKNGKMRPIGAPNYESRMISKALTDMLYSITEKSRSAEQHGYMKKRGAWSAILECLSKLKEGYAGYEFDLKSFFNTVEPFIYFRKLEEVDKKLTKLISNVIKGIEYRFSELLPESELNPKANRKNTLERTGVPQGLSLSPLLSTWALEYYGRPENLIMYADDGIYFFKHNISKFTRWIERMGRAGIEISPEKSGSLTPVFKFCGVTIDQPKRLVTYEGQSVSWDNPELEKWLKSINNLGYTKKEPEWSWTVNGESFITKRKLNLTWMEIVKVYWFRIIHGKMWNGYTVFLASGWRILDIFGSSSWACNELLMEVKRRREELESIKTFGLEKAEYEAFSYAPVRKGSYRRHYNNGAQETANKQEYWEIMQFHNLKRQQLRA
>DGR_BORDETELL
RNLIDQITTWENLLDAYRKTSHGKRRTWGYLEFKEYDLANLLALQAELKAGNYERGPYREFLVYEPKPRLISALEFKDRLVQHALCNIVAPIFEAGLLPYTYACRPDKGTHAGVCHVQAELRRTRATHFLKSDFSKFFPSIDRAALYAMIDKKIHCAATRRLLRVVLPDEGVGIPIGSLTSQLFANVYGGAVDRLLHDELKQRHWARYMDDIVVLGDDPEELRAVFYRLRDFASERLGLKISHWQVAPVSRGINFLGYRIWPTHKLLRKSSVKRAKRKVANFIKHGEDESLQRFLASWSGHAQWADTHNLFTWMEEQYGIACH
>Group_II_intron_LTRA_LACL
TRLYRYLLRPDIYYVAYQNLYSNKGASTKGILDDTADGFSEEKIKKIIQSLKDGTYYPQPVRRMYIAKKNSKKMRPLGIPTFTDKLIQEAVRIILESIYEPVFEDVSHGFRPQRSCHTALKTIKREFGGARWFVEGDIKGCFDNIDHVTLIGLINLKIKDMKMSQLIYKFLKAGYLENWQYHKTYSGTPQGGILSPLLANIYLHELDKFVLQLKMKFDRESPERITPEYRELHNEIKRISHRLKKLEGEEKAKVLLEYQEKRKRLPTLPCTSQTNKVLKYVRYADDFIISVKGSKEDCQWIKEQLKLFIHNKLKMELSEEKTLITHSSQPARFLGYDIRVRRSGTIKRSGKVKKRTLNGSVELLIPLQDKIRQFIFDKKIAIQKKDSSWFPVHRKYLIRSTDLEIITIYNSELRGICNYYGLASNFNQLNYFAYLMEYSCLKTIASKHKGTLSKTISMFKDGSGSWGIPYEI
>Retron_Vibrio_ret
MCRGRSRDIMKYKKLTTKAFISILSDETSDQLELLKKPIEPHGISDVKQGKLGTKSIFKLTPAKSQYLGRLNNKFFCHIQVNNSAVAYVEKKSYLDMFEPHRKNTNFLRIDIKSFFHSINREILAEALSPYVTNEIFFESGKVKQSLLDALLNLVSLRVSTEYNDQSLHNKDILPIGFKSSPVISNIVFRRFDIIIQELCARSDIIYTRYADDMLFSSPEHSKYLHTNKFLSEISYTLSLSGFKLNQAKTIKDKNMISVNGYVIESGENGNSGSIRISEKKTKKIYKLIYMMENNIPPRTIINRIFKIRDRDIIYSYDKGKRKFKDKFYKTQTLNKLTGYRAYIISLLIYNEKYHCIKEEYINEYKTLIGKLEVQIYKLVK
>Retron_MX65_MYXX
NRNLRDLLPDEAQLARYGLPVWRTEEDVAAALGVSVGVLRHYSIHRPRERVRHYVTFAVPKRSGGVRLLHAPKRRLKALQRRMLALLVSKLPVSPQAHGFVPGRSIKTGAAPHVGRRVVLKLDLKDFFPSVTFARVRGLLIALGYGYPVAATLAVLMTESERQPVELEGILFHVPVGPRVCVQGAPTSPALCNAVLLRLDRRLAGLARRYGYTYTRYADDLTFSGDDVTALERVRALAARYVQEEGFEVNREKTRVQRRGGAQRVTGVTVNTTLGLSREERPRLRAMLHQEARSEDVEAHRAHLDGLLAYVKMLNPEQAERLARRRKPRGT
>LINE-REL_MATAL_CNE
TPGKAPDIDTIQKALDSFKPDTAPGVSGWSVPLLKTAAKREPVKQFLQLLCAAIANNTAPGRSMLRTSRLIPLKKDDGSIRPIAVGELIYRLCAKALIISHFQPDFLLPFQLGVKSIGGVEPIVRLTERVLEGSAGAEFSFLASLDASNAFNRVDRAEMAAAVKTHAPTLWRTCKWAYGDSSDLVCGDKILQSSQGVRQGDPFGPLFFSITLRPTLNALSQSLGPSTQALAYLDDIYLFSNDSQVLSKTTQFLADKQHIIKLNEKKCKLISFDEI
RQDGFKMLGTMVGGKEKRAEFLEGRIRKEMAKVGKLKDLPHQHALLLLRFCIQQNLRHLQRSLRSDDLVDLWERLDTMLWEEVKRMRMRQREDTAEEEALGRSLTKLPARLGGLGLLSFKDVAPLAYRSAAEASD
>LINE-AP_BDDF_Cow
CCESAALNMPANLENSAVATGLEKVSFHSNSKERQCKECSHYRTIALISHASKVMLKILQARLHEYVNRELLDVQAGFRKAEEPENQIANICWIMEKAREFQKSIYFCFIDYAKPFDCVDHNQLWKILKEMGIPYHLICLLRNLYAGQEATVRTGHGTTDWFQIGKGVRQGCILSPCLFNFCAEYIMRNAGLEETQAGIKIAGTNINNLRYADDTTLMTENEEELKSLLMKVKVESEKVDLKLNIQKMKIMASGSITSWEIDGETVETVADFIFLGSKITTDGDCSHEIKRCLLLGRKVMTNLDSILKSRDITLPTKVRLVTAMFFPVVMYGCESWTVKKAEHRKIDAFELWCWRRLLRVPWTARRSNQSILKEISPGISLEGMMLKLKLQYFGHLM
>PLE_PHAEODACT
VATFSRDVRRLFRRQSCSSNLLPSQSAALRTLRTNYSLIVCKTDKNLGPAIMDRSTYICRAFQDHLADASTYRRLSEITATNRISAVRRIILGFISTTFPTRNDPTRKFLLRSLEQVSDPFGYLYILAKIHKTPWKTRPIVSVSGSLCHGLGRWVDSQLQKLLPSLPYVYNSSTHVCQRLRVHSDLPLSARCFSLDAVSMYTNIDTRHALSEIRAYFDSSGICERHGVQSMALLKGLEIIMLHNVFRFGDTFWVQKTGTAMGTPPAPMYATLYFAIHEHRILPSFSRELVEYGRYIDDGFGIWIPDPTLSDVDNDARWLSFQQAVNDYGRLTWEFTPRCSSLTFLDLFIELVPHEPIRTSLYEKALNLYLYLPPHSAHSPGMIRGLIIGQVRQIFLLTSTHGKRTELVRKLFLRLRARGYSRTMLLPLFNSALVLAESLLRPAPSASLSDSPPVADPVLFLHVQYHPLDVPTATLQQTFASTMLHPPGEPPLPDLRNRSFSRFGCNRLIVAYHRPRNLGNLLAPR
>LINE-REL_GILD
GTLNKKASGVSGLGPVQLKAMKQNDSFVKYLTQAYNELTTHPEAMSDVMAMFEFRAILIPKESDGYRPIAIGKTVTNIFHRVLLKRLIRHANYLSCEQIAFKQNAYAVGVRRAHESRPGMHAVSLDTKNAFNSLPRAEVVRALNEAGVPKVLVDYIRNFLDLRHSRDVKCEVCGVPQGDPLSTFLFCMAIERLLRRLKERGITFLAYADDIVAFHDEGYPAGVITQQATAEAAAMGLTIRSDKCKSTMAGEEVTFLNHPVSPTPASLAPKAIAGAETALRKIENAPITIHQKLILLSLCVVPMVNYAPLVEITSDKADYEELDRRRTRLQQTNQQKLRSPGRLPGVPEEKGGLGLLMPGLYHDELRRAWASLDV
>Gypsy_Dm_Gypsy
TAVTATIRTVDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPD
>Retron_RT_HERAU
MSLHLSSDPDTLRQQFFQLKSRDDLLNLLDISQQQLLYYLYICPENKRYRHLRLRKKRGGYRTIYAPATHLKIVQQKLSSILQLIYEQKPAVHGFVPHKSIVSNAAMHLNKTYVLNLDLQDFFPSINFGRVRGLFMNQPYYLNEEVATILAQICCHRNTLPQGAPTSPVISNMICAKLDRELLRFAQANRCVYTRYADDLTFSTNTRQPPSKLVRRTEATASIELGRDLVSIITANGFQVHPEKSRLQVKGRRQEVTGLTVNHFPNVPRRLIRQIRAMLHAWRKFGLDAAQQHYYAHYCHRQYPVFKPRPPFRQVLIGKIAFVGMVRGKHDQLYLRLRDQLLNLDPTYRAAVEK
>PLE_ATHAVTELM
HNKYLPSDHLKIIKNLERKFEATKTIIRKTDKSKVFHLGTTDDHIFKARTYMIKTDAYQDLEGINPLDALVKRTNEFLYALWVNKHITQKHYENLKVQREEAELAHLYFLPKAHKPNTPLRPIVAGMKSPTIGISKWLDDLLRPLFNQLALDIAIENGTQLIKSVERWSDNYLTSSTTFISMDVTDLYTMIPQEGGVVAIKRLLEEHNLKQIDGIKKEIILALTRFVITNNYFYFDGSYYKQIRGGAMGSPLTLTIANTYMYFVERPIAKWANRTFSLYYRYIDDLFIMSNIHEDILKGLVKFWNRIDKNIVFSESIGKNVQYLDVEFENRGGKLISKVYHKPSHELYFLPFSSVHAQHIKRNIPFVALVRAIRYSSSYDDYKLEEAHICMSLLLNQYPLNFILKQFERVSQAFHCAVPTQKNFLHIRKTFLNEKRNEKTEKKIDFEVNIMCHFSFCKGMSEFTTSFHKLWNECFSDTPICNRKPIVGSRRLNNLLDYLVHKKPNKVFLK
>PLE_ATHAVTELN
YMAPLSYLKVYRTQTEYQTMISIQHSLRKGKYVLRVTDKGGIFHIGHTKDYEQIAQAYRQKTQAYIELENDPLWTVFDKVVKLLNDLHSKKHIFVWHLDKMMPKRQKVKLAHLYFIPKPHKEGTPLRPIISSINTPTTGISKFLDRLLRPLFDKHVRSTIIIDGVDLIHRLDTYVANGLLKPTTYLCTFDITDLYTMLPQEESLDILTEFLLVHGYQKVKGLSIDTIRKISSSVITENVFTYDKKYYRQIIGGAMGSAFTLTLANIFMWKWEKELANKQSVANEIYGRYIDDIFFTSNESLDQINEMLDKINSFHPNIKLVRQIGSSVSFLDVYVENKEGVLATSVHHKEAAEPYVVPFTSDHPRHIFRNIIRTALLRVVRFSSTLATFENERRSIKLMLLYNGYPPRFISTQIVKFFNENGIDPTLAQTIPDEHVFIILRRQLLAKPTIQQMALESRLSTITCSTDEDPANNQNLPAKAKKKSKWDNNIIIHYKHESRLNRYKTDIHKIWNNTFRQT
>Gypsy_LReODr_RT
ESAVFAHNETDIGNIPSLQMTLSLKDDIPVQKAYTSIPKPLLKEVKEYIQDLLAKGWIVKSRSPYAAPVVCVRKRDGTLRLCIDYRQLNKKTVPDRHPLPRIQDLMNTLGGYRWFSILDQGKAYHQGFMAEGSRHLTAFVTPWGLFEWVRIPFGLSNAPAAFQRSMEDMLESIRDECCLPYLDDVLCFAKSFEEYVEKLRVVFRALRHHGVKLRPAKCELFKHEVRYLGRLVSADGVRVDPKDLEAVRVLRDKVPQNVGEVRRLVGFLSYYRTYIQDFARLAKPIYELLQAHTAGAASQEGRRKEKKRGLQLPSRNPIVWEDKHQQSLD
>LINE-REL_GilT
KITGKALVRELRSMKAVATGPSGLGKAHLLHLCDKAGAAEVFATALAGLLATRDWGQLKPLAEFRLKLLPKPNGKWRPIAIQETLLVAFHRAILKQTAPLKKLPSWQLAFEQMAHVKAISRAEELKASHHLLTVDVRNAFNSVPHAVIIFSLHRARVPLPTVEYVSSFLGARHCVDLAAVPAGVPQGDPLSMALFCQSIVWPAEAFLSQYELLAYADDLVVASHPSVPADTVKRDASDALAKVGLCVEQPKCASTQLGAIAFMGTRILRDGPYNLGEQATRSLLGHLETLRAADLSRHDRLRLLAACIVPSVNYGPLVDAYPGPHSYADVDAAVVAEVAGLLSIPDQQARALALTPRSNYGLGLVLPGHYHADMQQQRREMAA
>PLE_Hydra_PLE
HYGGNTLSLKDFKEKKVKLAVNKPNTGGLRSVLGSTGFALLNQKDDSLKLEEQIKNSKIIDYDPTSTLTTKFQRQLCKLRKEGKLDTNTYFKMYPSDCNPPRIYGMIKAHKPEKDYPMRPVVSTINTPPYGTSDYLVKIIKPTLNKNKNSLINSNSFVNEARQWKIDPNEVQVSFDIVNLYPSIPIDEAIPVIIDILNADIDDLKTRTKLTLADIHQLIELSLSICYFLYENNIRIIPNSGPIGLSLMVVMAEVFLQNIEREALNIAIIHTSEPKTYKRYVDDCHARFASIKQQQMFLNILNEQHPAIKYTVELENDLKQLYFLDINITNAGSGTYEFHIHRKEAITNVQLKPNSNINPNIITGVFKGFLCREKRLCSQKYLKQEIDFLIEICCHNIKNHLTIKNSRIIDHDPTPTLTTKFQKQLSKLRKEVK
>LINE-REL_GILM
TAKALLKELQAMRPVAAGPSGLGKPHLLHLCGAAGAAELFTSVLTTLFSSRNWAQLQPLCEFRLKLLPKSGGRWRPIAVQETLLVAFHRLLLRRTPALRKLPAWQLAFEHLAQMKAIRAAEELKRTHHLLTVDVRNAFNSVPHSVILFALRRAGVVQPTVAYIESFLAARHSSDLPAVPAGVPQGDPLSMAMFCQSLVWPVETYLGQYKVVAYADDLVIASEEAIPIDTVKSDAQSALSRIGLTVELSKCSSTQAGAISFMGTRVLKHSSFNLAQTSARRLHEHLAVLRASGLSLHDRLRLLSACVVPAVNYGPLVDDYPGPSPYADVDAQIVEEVATLLEIPEPLAKTLALTPRAKYGLGLVLPHHYYDEMHRQRQDMKA
>Hepadnavirus_DHBV
ISGRKATGNHHHCSNVTNSVETTTRGRSTPGKQVVTRDSSALPESRASRACHKDSSPQKEENAWYLRGNTSWPNRITGKLFLVDKNSRNTTEARLVVDFSQFSKGKNAMRFPRYWSPNLSTLRRILPVGMPRISLDLSQAFYHLPLNPASSSRLAVSDGQHVYYFRKAPMGVGLSPFLLHLFTTALGSEIARRFNIWTFTYMDDFLLCHPNARHLNSISHAVCSFLQELGIRINFDKTTPSPVNDIRFLGYQIDQKFMKIEESRWKELRTVIKKIKIGAWYDWKCIQRFVGHLNFVLPFTKGNIEMLKPMYAAITNKVNFSFSSAYRTLLYKLTMGVCKLAIRPKSSVPLPRVATDATPTHGAISHITGGSAVFAFSKVRDIHIQELL
>RVT_PARVT
QASPFNQKSLTTCINGLLTEDILSDEKQAILQDFLGSDVALAEIADVLNTRFSDIKQWQWDAGKDGIRVIPRAGLNGKYRVWADDDILQMIFVQYIGVRLCNIIKPALKIFMWAVRQRDLDTNTVPTAAESERRRYYLSEYPTSHNVEDMRMEDYMETFFLSQLPSTESRNTSTPKKSNIKQQLLRRLTTELLIHRLRGASNPVALVQTDLQWYGTGLSHTTIYSLMRYIGFGQDWISFFKKYLEAPLNLDMASGQPAPTWARALERGVPWAHASEKLTGELVLFFMDIAVNRETGILPYRLHDDIWLLGEPTRAAQAWECMQLFAKVFGLEFNRSKTGSVYLPGASNRDTNVSDILPAGPVTIGFLQLDPETGRWTIDQKLVFAHVDQLKKQLDECNSVLSWVQTWNSCIGRFFSHTFGEPAFCFGREHISEVLDTYTKMLARLFPAENGVQGSVVEHLKAILRDRFGVSDLPDAFIFLPEQLGGLGLRNPFVSLFLIRDGITKTPGEILDEYI
>TERT_TcasTERT
WLQNVEPNLRPKLLLKHNLFLLDNIVKPIIAFYYKPIKTLNGHEIKFIRKEEYISFESKVFHKLKKMKYLVEVQDEVKPRGVLNIIPKQDNFRAIVSIFPDSARKPFFKLLTSKIYKVLEEKYKTSGSLYTCWSEFTQKTQGQIYGIKVDIRDAYGNVKIPVLCKLIQSIPTHLLDSEKKNFIVDHISNQFVAFRRKIYKWNHGLLQGDPLSGCLCELYMAFMDRLYFSNLDKDAFIHRTVDDYFFCSPHPHKVYDFELLIKGVYQVNPTKTRTNLPTHRHPQDEIPYCGKIFNLTTRQVRTLYKLPPNYEIRHKFKLWNFNNQISDDNPARFLQKAMDFPFICNSFTKFEFNTVFNDQRTVFANFYDAMICVAYKFDAAMMALRTSFLVNDFGFIWLVLSSTVRAYASRAFKKIVTYKGGKYRKVTFQCLKSIAWRAFLAVLKRRTEIYKGLIDRIKSREKLTMKFHDGEVDASYFCKL
>LINE-AP_Ingi_Tbr
IASEFSPITMAELRRSIKLLPSGSAAGPDCLYNEALQHLGRTALNVVLRLFNESLRTGVVPPAWKTGVIIPILKAGKKAEDLDSYRPVTLTSCLCKVMERIIAARLRDTVESQLTPQQSGFRPGCSTLEQLLHVRAALCRPTHQYRTGAVFVDYEKAFDTVDHDKIAREMHRMKVSPHIVKWCVSFLSNRTGRVRFKEKLSRSRTFERGVPQGTVLGPIMFIIVMNSLSQRLAEVPLLQHGFFADDLTLLARHTERDVINHTLQCGLNVVLQ
WSKEYFMSVNVAKTKCTLFGCIERHPFTLQLDGERIGADRTPKLLGVTFQCLQGMATHAAETRRKMDFRLLQIAAISASTWGPRRQVLRAFYLALVQAHTMYGIEVWYWDASERSRDLLASAQHKASRIIAGIPHGTRKEDSLLEANLLPLKTTTLVRSMKFMLMCE
>TERT_C_cinerea
SLKRRELLEEFLFWYLDGFVTPLLKTTFYITESSAFRNQILYFRQDDWKILCEPLLDRLIHGMFERIPDKHAKEILRQRSLGFSFVRLLPKETGVRPIVNLRKKKPITTGNYTADRSINQVLQTAFNILSYEKNIWTERLGASVFGSDEVYAKLSAFKKRVSKSENGSLPKLYFVKVDVQACFDSIEQTKLLEILRELISKAGLIRYSHFLGYCSRFNRTLMSPNAMANSIFPQIALRERHDTHFVKTAQDLSRTLRNIIFVDQVRYPEETKDNILELLEEHITDNTVKIGKHYYKQKVGIPQGSVLSALLCSFFYGDLERRTMRFTEDIESVLMRLIDDYLFITTSLKKAKAFLEMMNNGHPEYGCFISKDKTLTNFDYGTDVMNVVDPSSSKNFAWCGYLINMRDLSVTVDYSRYAGWGIKNTLTVVRGRQSGAVFKHKMLLFGQARNHIIYSAPDLNPEDTVYLNFYQNFLLTALKMHEYIRDGGLSLKQNSTFIYKTIQETIEYSHASAMAQASRKNIGGEKRWRLKRLGNHAFHYILRKKPHGYATVLRHLERQLGKLCNRFYKRRFKRLVKEG
>LINE-AP_Zepp_Chlo
GERGDGSVSVAELETALRSLPRGKAPGLDGLPYEFYLRFWPVVGLELAGMLQEAFGGGRRCPPLTQGRITLLYKGKGADRESLASYRPITLLNTDYKLAARAIASRIGPLLNQVVDATQTGFLPKRWAGDNVLAHLEEISYLEATHQPGVQVFLDFEKAFDRLDRAWIERCMAAVGFGPGVQRWVHILHSGTTSRVAFNGWHTDAFPVAAGVFQGSPLSPLLFVLARAPMAAHARMLAGQLAFQPIRLPSGEPAPVMHQHADDTSVHARTPGMLRSCWGPSVGLHCAATGARLQRSKSQALGLAASAISPGPIQSRGVTFAASSDGVKHLGIPLSTQPAAAATALYTAIIEKVEARIARWSGFRLSLLGRAYVAKQVLASMVTYHATFIPVPQDLLQRLCRAIHTFVAANRPVTPGAAAALFPSKDVCFRAAAHGGIALVDIKAQILALQAKVVGRLL
>DIRS_GOS_828036
EFLELDVIKEVDKNFPVYNSHVFVVHTEERSTKDRMIFNMKPLNKFLVVETFTMISIHDNVPYLSNYNWATAIDISKAYLHLPIDPEYEKFFSFSFAGKKYIFRAMPFGLASAPYIFTRFTKPIWSYLRKEFQIMIFAYLDDILILAHSFLQSKFHTMVTIYFLKQLGFKLNLKKSCLTPSQTFTYLGTNVDLANKTIGVTDFNKEKILSRISSLLREKEISKRQLERVVGTLNFNSYFTQNGRTKFVELITVFNSHFVFRKDRDSKRTVPLELQNALNFWLKEDALRPRTLLRPDKQATLWIDASKTGWGGVVSCHDILQTTAQGIWNEIGFELNSNNKELLAILRSVKS
>LINE-REL_T_therm
DQCFFPPNYSEISNTLQSIPCSKTTKKQMISEKMLSQKQHRDANLRTLLRDILTNPDSFRQTFNARQIYLLKSESRQIINCRPITIQSSAIKILENAMLQHVQKLKDEGKVKDFHISQCGFQKNRSTIINICRTIALIQSTVAKKENRVAIFVDVKSAFDSVNHEQLFQALRNQGFDDIFIKSVAFLYQHCRINGYQIGRGVIQGGKLSPILFNYLYEEVRVKILEIWKSKKLDCQDLHFELFADDMLIILKKYKLTATLLEVLKQAYQEINLQINESKTKIMLIGKQETYIKDSIRLRQAKGIDLVMEFKYLGLVINNVGKIHKDVAKKVDKAKNLTQMLKRWRYNK
LGIIPCLLLWQLFIKSQLQYASAIMITSAQSEKCMRSLRNMYNSSLRDTLGLNRNTSISTICYVLGIENIESMILNSYDNLMCQINADKR
>Retrovirus_1VRT_B
PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAE
>Group_II_intron_YMF40_MAR
YEQLLDPEIFRLAYELKKSKSGNMKPGADKETLDGFSQAYVEKVVRQLKDESFQFRPSRREFIPKADGKLRSLGIPSPRDKIVQEVMRRILEPVFEPRFLDSSHGFRPHRSPHTALRQIRRWTGTSWMIEGDIKGYFDNIDHHLLAGFIAELVKDQRLLALYWKLVRAGYVNQGKAEPHLLTGVPQGRILSPLLSNIYLHQFDLFMEEIKVKYTTTGALSKNNPIYLKARNKYYKLVKSLKASSAEIIRARRDMLKMTYGIQTGSRVRYVRYADDWVIGVTGPKALAVQIKEEVSTFLQEKLKLSLQAEKTRITNLSRSEALFLGTLISITTRKYVQSQKVGGGHRRASLGRIRLCIPIDILIGKLSQMGACDEKGTPKAVTKWIFLNVGEIINKYMAVFRGYYNYYSFADDIHHLLQIIYILRYSAINTVARKLGLNTAKVIKRFGVDLIFRDHTNEI
>RTL_Chlamre_R
PASLHEVLRLAGLLQGYKDFLSLTKQAEAFFQAGDYRSAFNTISKMWVHPQIVPALLLMECFETRELTVPYWYKSIKLRRQYIQKKNGGVRPIIVAHKGLRICMAVINRLLQSCCVSWSNQTFGFRPGFGTHHAVLHLAQKAQQMLNKQQQAVLVTFDLQAAYNSVDIKHLMQTLQLQYLPNDMKKLIWMWQHLPLAQLNAGINGLAQGYAYSPTLFAWYVDQLVGQHMDFTIYADNFAGVFLTQQDAQFAVKEAQTLLQKSGLLIAPSSIKMHLLDKNQHSELNWLGHKVLFPSCTVKLQHHQLLVNQHSPQVWTIQKWDKMLRTLGWVQLALNADWRRF


