+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Culex quinquefasciatus (southern house mosquito)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        CpipJ_CPIJ016666 DNA-directed RNA polymerase II largest subunit	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        CpipJ_CPIJ007655 DNA-directed RNA polymerase II 140 kDa polypeptide	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        CpipJ_CPIJ005304 DNA-directed RNA polymerase II subunit J	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        CpipJ_CPIJ006734 DNA-directed RNA polymerase II 16 kDa polypeptide	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        CpipJ_CPIJ001219 DNA-directed RNA polymerase II 19 kDa polypeptide	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        CpipJ_CPIJ001855 DNA-directed RNA polymerase II 15.1 kDa polypeptide	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
E        CpipJ_CPIJ007365 conserved hypothetical protein	K21987 POLR2M; DNA-directed RNA polymerase II subunit GRINL1A 
E        CpipJ_CPIJ019384 conserved hypothetical protein	K21987 POLR2M; DNA-directed RNA polymerase II subunit GRINL1A 
D      Pol I, II, III common subunits
E        CpipJ_CPIJ015285 DNA-directed RNA polymerase II 23 kDa polypeptide	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        CpipJ_CPIJ018444 DNA-directed RNA polymeraseI	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        CpipJ_CPIJ005206 DNA-directed RNA polymeraseI	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        CpipJ_CPIJ018569 DNA-directed RNA polymeraseI	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        CpipJ_CPIJ002930 RNA polymerase small Zn-binding subunit	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        CpipJ_CPIJ005859 DNA-directed RNA polymerase II 7.6 kDa polypeptide	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        CpipJ_CPIJ002554 TFIIA	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        CpipJ_CPIJ007398 transcription initiation factor IIA gamma chain	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        CpipJ_CPIJ006843 transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        CpipJ_CPIJ001883 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        CpipJ_CPIJ007600 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        CpipJ_CPIJ003789 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        CpipJ_CPIJ018368 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        CpipJ_CPIJ003658 transcription initiation factor TFIID subunit 1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        CpipJ_CPIJ008434 conserved hypothetical protein	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        CpipJ_CPIJ002165 transcription initiation factor	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        CpipJ_CPIJ002164 conserved hypothetical protein	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        CpipJ_CPIJ004236 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        CpipJ_CPIJ008670 wd-repeat protein	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        CpipJ_CPIJ002544 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        CpipJ_CPIJ008789 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        CpipJ_CPIJ004650 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        CpipJ_CPIJ004651 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        CpipJ_CPIJ001398 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        CpipJ_CPIJ010483 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        CpipJ_CPIJ005672 transcription initiation factor TFIID subunit 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        CpipJ_CPIJ011778 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        CpipJ_CPIJ002639 transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        CpipJ_CPIJ020226 transcription initiation factor IIE subunit alpha	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        CpipJ_CPIJ013475 transcription initiation factor IIE subunit beta	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        CpipJ_CPIJ009645 Transcription initiation factor IIF alpha subunit	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        CpipJ_CPIJ017673 transcription initiation factor IIF subunit beta	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        CpipJ_CPIJ015824 TFIIH basal transcription factor complex subunit 1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        CpipJ_CPIJ004242 TFIIH basal transcription factor complex p44 subunit	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        CpipJ_CPIJ004241 btf	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        CpipJ_CPIJ000358 TFIIH basal transcription factor complex p34 subunit	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        CpipJ_CPIJ005256 TFIIH basal transcription factor complex p52 subunit	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        CpipJ_CPIJ006481 TFIIH basal transcription factor complex helicase XPB subunit	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        CpipJ_CPIJ016774 TFIIH basal transcription factor complex helicase XPB subunit	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        CpipJ_CPIJ018703 TFIIH basal transcription factor complex helicase subunit	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        CpipJ_CPIJ014629 conserved hypothetical protein	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        CpipJ_CPIJ018296 cak1	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        CpipJ_CPIJ001565 CDK-activating kinase assembly factor MAT1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        CpipJ_CPIJ004855 cyclin-H	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        CpipJ_CPIJ006056 conserved hypothetical protein	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        CpipJ_CPIJ014300 mediator complex	K15129 MED8; mediator of RNA polymerase II transcription subunit 8 
E        CpipJ_CPIJ001479 conserved hypothetical protein	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        CpipJ_CPIJ000780 CRSP complex subunit 6	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        CpipJ_CPIJ006001 mediator complex	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        CpipJ_CPIJ013981 mediator complex	K15137 MED19; mediator of RNA polymerase II transcription subunit 19 
E        CpipJ_CPIJ002301 trf-proximal protein	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        CpipJ_CPIJ001313 mediator complex	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        CpipJ_CPIJ002842 mediator complex	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        CpipJ_CPIJ008343 intersex	K15142 MED29; mediator of RNA polymerase II transcription subunit 29 
E        CpipJ_CPIJ004789 thyroid hormone receptor-associated protein 6	K15143 MED30; mediator of RNA polymerase II transcription subunit 30 
D      Middle
E        CpipJ_CPIJ007960 peroxisome proliferator-activated receptor binding protein	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        CpipJ_CPIJ013633 mediator complex subunit 4	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        CpipJ_CPIJ011035 mediator complex	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        CpipJ_CPIJ012338 mediator complex	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        CpipJ_CPIJ008518 mediator complex	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        CpipJ_CPIJ006021 mediator complex	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        CpipJ_CPIJ013599 mediator complex	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        CpipJ_CPIJ015256 mediator complex subunit 4	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        CpipJ_CPIJ018634 mediator complex	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        CpipJ_CPIJ002763 mediator complex	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        CpipJ_CPIJ000398 mediator complex	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        CpipJ_CPIJ007281 cofactor required for Sp1 transcriptional activation subunit 9	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        CpipJ_CPIJ016095 mediator complex	K15149 MED9; mediator of RNA polymerase II transcription subunit 9 
E        CpipJ_CPIJ003763 RNA polymerase II mediator complex subunit 10	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        CpipJ_CPIJ013518 Srb7p: RNA polymerase II holoenzyme component	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        CpipJ_CPIJ013691 mediator complex	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        CpipJ_CPIJ005679 CRSP complex subunit 2	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        CpipJ_CPIJ018438 mediator complex subunit rgr-1	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        CpipJ_CPIJ001509 mediator complex	K15157 MED15; mediator of RNA polymerase II transcription subunit 15 
D      CDK-module
E        CpipJ_CPIJ000891 cell division protein kinase 8	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        CpipJ_CPIJ006239 G1/S-specific cyclin-C	K15161 CCNC; cyclin-C 
E        CpipJ_CPIJ013223 mediator of RNA polymerase II transcription subunit 12	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        CpipJ_CPIJ007864 conserved hypothetical protein	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        CpipJ_CPIJ000292 CRSP complex subunit 3	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        CpipJ_CPIJ018924 mediator complex	K15167 MED24; mediator of RNA polymerase II transcription subunit 24 
E        CpipJ_CPIJ016400 thyroid hormone receptor-associated protein complex 100 kDa component	K15167 MED24; mediator of RNA polymerase II transcription subunit 24 
E        CpipJ_CPIJ018925 thyroid hormone receptor-associated protein TRAP100	K15167 MED24; mediator of RNA polymerase II transcription subunit 24 
E        CpipJ_CPIJ017650 conserved hypothetical protein	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        CpipJ_CPIJ017651 conserved hypothetical protein	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        CpipJ_CPIJ013675 mediator complex	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        CpipJ_CPIJ007462 histone acetyltransferase PCAF	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        CpipJ_CPIJ013348 transcription-associated protein 1	K08874 TRRAP; transformation/transcription domain-associated protein 
E        CpipJ_CPIJ017276 suppressor of ty3	K11313 SUPT3H; transcription initiation protein SPT3 
E        CpipJ_CPIJ007393 transcriptional adaptor 2	K15127 TADA2B; transcriptional adapter 2-beta 
E        CpipJ_CPIJ018127 conserved hypothetical protein	K11315 TADA3; transcriptional adapter 3 
E        CpipJ_CPIJ019805 conserved hypothetical protein	K11315 TADA3; transcriptional adapter 3 
E        CpipJ_CPIJ002684 SPT3-associated factor 42	K11317 TADA1; transcriptional adapter 1 
E        CpipJ_CPIJ008434 conserved hypothetical protein	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        CpipJ_CPIJ002165 transcription initiation factor	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        CpipJ_CPIJ002164 conserved hypothetical protein	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        CpipJ_CPIJ004236 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        CpipJ_CPIJ008670 wd-repeat protein	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        CpipJ_CPIJ002544 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        CpipJ_CPIJ008789 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        CpipJ_CPIJ001398 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        CpipJ_CPIJ010483 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        CpipJ_CPIJ011778 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        CpipJ_CPIJ003322 conserved hypothetical protein	K11363 SGF11; SAGA-associated factor 11 
E        CpipJ_CPIJ004580 coiled-coil domain-containing protein 101	K11364 SGF29; SAGA-associated factor 29 
E        CpipJ_CPIJ014026 conserved hypothetical protein	K11316 SUPT7L; STAGA complex 65 subunit gamma 
E        CpipJ_CPIJ001937 chromodomain helicase DNA binding protein	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        CpipJ_CPIJ005882 enhancer of yellow 2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        CpipJ_CPIJ003218 ubiquitin carboxyl-terminal hydrolase 22	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        CpipJ_CPIJ007014 splicing factor 3B subunit 3	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        CpipJ_CPIJ008910 SNR1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        CpipJ_CPIJ016185 conserved hypothetical protein	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        CpipJ_CPIJ019147 brg-1 associated factor	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        CpipJ_CPIJ007400 dalao	K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 
E        CpipJ_CPIJ018416 brahma-associated protein 111kD	K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 
E        CpipJ_CPIJ009808 conserved hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        CpipJ_CPIJ000995 actin	K11652 ACTL6B; actin-like protein 6B 
E        CpipJ_CPIJ010152 conserved hypothetical protein	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        CpipJ_CPIJ002241 Brahma associated protein 170kD	K11765 ARID2; AT-rich interactive domain-containing protein 2 
E        CpipJ_CPIJ007271 polybromo-1	K11757 PBRM1; protein polybromo-1 
D      SWI/SNF complex
E        CpipJ_CPIJ008910 SNR1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        CpipJ_CPIJ012506 p31A	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        CpipJ_CPIJ018512 cell division cycle and apoptosis regulator protein 1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        CpipJ_CPIJ004677 transcription elongation factor S-II	K03145 TFIIS; transcription elongation factor S-II 
E        CpipJ_CPIJ004678 transcription elongation factor S-II	K03145 TFIIS; transcription elongation factor S-II 
E        CpipJ_CPIJ010586 transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        CpipJ_CPIJ003095 conserved hypothetical protein	K15172 SUPT5H; transcription elongation factor SPT5 
E        CpipJ_CPIJ008034 transcription elongation factor SPT6	K11292 SUPT6H; transcription elongation factor SPT6 
E        CpipJ_CPIJ018646 transcription elongation factor spt6	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        CpipJ_CPIJ005251 transcription termination factor 2	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        CpipJ_CPIJ019303 transcription termination factor 2	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        CpipJ_CPIJ001187 conserved hypothetical protein	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        CpipJ_CPIJ001186 conserved hypothetical protein	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        CpipJ_CPIJ015409 cleavage and polyadenylation specificity factor	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        CpipJ_CPIJ009192 cleavage and polyadenylation specificity factor subunit 4	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        CpipJ_CPIJ008212 phosphatase-1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        CpipJ_CPIJ001987 phosphatase-1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        CpipJ_CPIJ011126 symplekin	K06100 SYMPK; symplekin 
E        CpipJ_CPIJ019639 phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        CpipJ_CPIJ007587 phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        CpipJ_CPIJ007586 RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        CpipJ_CPIJ014588 conserved hypothetical protein	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        CpipJ_CPIJ003712 HLA class III protein Dom3z	K14845 RAI1; RAT1-interacting protein 
E        CpipJ_CPIJ000451 conserved hypothetical protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        CpipJ_CPIJ006106 hrp65-1	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        CpipJ_CPIJ006108 splicing factor	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        CpipJ_CPIJ006107 NONA protein	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        CpipJ_CPIJ009563 no-on-transient A	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        CpipJ_CPIJ010606 conserved hypothetical protein	K13191 RBM16; RNA-binding protein 16 
E        CpipJ_CPIJ009255 helicase sen1	K10706 SETX; senataxin [EC:5.6.2.-] 
E        CpipJ_CPIJ015136 dodo	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        CpipJ_CPIJ012821 antimeros	K15174 PAF1; RNA polymerase II-associated factor 1 
E        CpipJ_CPIJ010914 cdc73 domain protein	K15175 CDC73; parafibromin 
E        CpipJ_CPIJ016677 TPR repeat-containing protein	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        CpipJ_CPIJ001346 conserved hypothetical protein	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        CpipJ_CPIJ006192 conserved hypothetical protein	K15178 RTF1; RNA polymerase-associated protein RTF1 
E        CpipJ_CPIJ015837 conserved hypothetical protein	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        CpipJ_CPIJ003424 conserved hypothetical protein	K15179 WHSC2; negative elongation factor A 
E        CpipJ_CPIJ012256 negative elongation factor B	K15180 COBRA1; negative elongation factor B 
E        CpipJ_CPIJ013657 conserved hypothetical protein	K15181 TH1L; negative elongation factor C/D 
E        CpipJ_CPIJ011793 conserved hypothetical protein	K15181 TH1L; negative elongation factor C/D 
E        CpipJ_CPIJ013659 Th1l protein	K15181 TH1L; negative elongation factor C/D 
E        CpipJ_CPIJ000025 negative elongation factor E	K15182 RDBP; negative elongation factor E 
D      Super elongation complex (SEC)
E        CpipJ_CPIJ004404 conserved hypothetical protein	K15183 ELL; RNA polymerase II elongation factor ELL 
E        CpipJ_CPIJ006191 ELL-associated factor 1	K15186 EAF; ELL-associated factor 
E        CpipJ_CPIJ020269 conserved hypothetical protein	K15186 EAF; ELL-associated factor 
E        CpipJ_CPIJ006190 conserved hypothetical protein	K15186 EAF; ELL-associated factor 
E        CpipJ_CPIJ003562 conserved hypothetical protein	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        CpipJ_CPIJ012914 cyclin T	K15188 CCNT; cyclin T 
E        CpipJ_CPIJ008862 cell division protein kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      Brd4/P-TEFb complex
E        CpipJ_CPIJ004312 conserved hypothetical protein	K11722 BRD4; bromodomain-containing protein 4 
E        CpipJ_CPIJ012914 cyclin T	K15188 CCNT; cyclin T 
E        CpipJ_CPIJ008862 cell division protein kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        CpipJ_CPIJ002766 conserved hypothetical protein	K15189 HEXIM1_2; protein HEXIM1/2 
E        CpipJ_CPIJ006467 conserved hypothetical protein	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        CpipJ_CPIJ000796 bicoid-interacting protein 3	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        CpipJ_CPIJ001408 conserved hypothetical protein	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        CpipJ_CPIJ005821 multi-sex-combs	K15191 LARP7; La-related protein 7 
E        CpipJ_CPIJ012914 cyclin T	K15188 CCNT; cyclin T 
E        CpipJ_CPIJ008862 cell division protein kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      DBIRD complex
D      Others
E        CpipJ_CPIJ003582 TATA-binding protein-associated factor 172	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        CpipJ_CPIJ009231 negative cofactor 2 beta	K21751 DR1; down-regulator of transcription 1 
E        CpipJ_CPIJ004276 latent nuclear antigen	K15193 SPTY2D1; protein SPT2 
E        CpipJ_CPIJ016523 latent nuclear antigen	K15193 SPTY2D1; protein SPT2 
E        CpipJ_CPIJ000396 conserved hypothetical protein	K15194 AFF2; AF4/FMR2 family member 2 
E        CpipJ_CPIJ004583 RNA polymerase II subunit A C-terminal domain phosphatase	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        CpipJ_CPIJ008263 nuclear lim interactor-interacting factor	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        CpipJ_CPIJ011532 conserved hypothetical protein	K17498 SPN1; transcription factor SPN1 
E        CpipJ_CPIJ000842 conserved hypothetical protein	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        CpipJ_CPIJ001364 conserved hypothetical protein	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        CpipJ_CPIJ014706 conserved hypothetical protein	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        CpipJ_CPIJ019414 conserved hypothetical protein	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        CpipJ_CPIJ000129 conserved hypothetical protein	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        CpipJ_CPIJ003097 cyclin-K	K23326 CCNK; cyclin K 
E        CpipJ_CPIJ013206 ATP-binding domain 1 family member B	K24104 GPN; GPN-loop GTPase 
E        CpipJ_CPIJ013389 transcription factor FET5	K24104 GPN; GPN-loop GTPase 
E        CpipJ_CPIJ002525 XPA-binding protein 1	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        CpipJ_CPIJ006171 conserved hypothetical protein	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        CpipJ_CPIJ018595 DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        CpipJ_CPIJ004871 conserved hypothetical protein	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        CpipJ_CPIJ003123 DNA-directed RNA polymerase I 40 kDa polypeptide	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        CpipJ_CPIJ000979 DNA-directed RNA polymerase I subunit D	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        CpipJ_CPIJ009822 DNA-directed RNA polymerase III subunit C	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        CpipJ_CPIJ007770 DNA-directed RNA polymerase III subunit D	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        CpipJ_CPIJ007413 DNA-directed RNA polymeraseIII 80 kDa polypeptide	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        CpipJ_CPIJ018410 DNA-directed RNA polymeraseIII 80 kDa polypeptide	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        CpipJ_CPIJ017445 DNA-directed RNA polymerase III subunit F	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        CpipJ_CPIJ007463 conserved hypothetical protein	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        CpipJ_CPIJ007887 DNA-directed RNA polymerase III 25 kDa polypeptide	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        CpipJ_CPIJ009943 conserved hypothetical protein	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        CpipJ_CPIJ015892 DNA-directed RNA polymeraseIII 12.5 kDa polypeptide	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        CpipJ_CPIJ015285 DNA-directed RNA polymerase II 23 kDa polypeptide	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        CpipJ_CPIJ018444 DNA-directed RNA polymeraseI	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        CpipJ_CPIJ005206 DNA-directed RNA polymeraseI	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        CpipJ_CPIJ018569 DNA-directed RNA polymeraseI	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        CpipJ_CPIJ002930 RNA polymerase small Zn-binding subunit	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        CpipJ_CPIJ005859 DNA-directed RNA polymerase II 7.6 kDa polypeptide	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        CpipJ_CPIJ005746 zinc finger protein 28	K09191 GTF3A; general transcription factor IIIA 
E        CpipJ_CPIJ014060 transcription factor IIIA	K09191 GTF3A; general transcription factor IIIA 
E        CpipJ_CPIJ007487 zinc finger protein 58	K09191 GTF3A; general transcription factor IIIA 
E        CpipJ_CPIJ001469 serendipity locus protein delta	K09191 GTF3A; general transcription factor IIIA 
E        CpipJ_CPIJ004793 transcription factor che-1	K09191 GTF3A; general transcription factor IIIA 
E        CpipJ_CPIJ014711 zinc finger protein	K09191 GTF3A; general transcription factor IIIA 
E        CpipJ_CPIJ019412 zinc finger protein 567	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        CpipJ_CPIJ001883 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        CpipJ_CPIJ007600 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        CpipJ_CPIJ003789 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        CpipJ_CPIJ018368 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        CpipJ_CPIJ008270 transcription factor IIIB 90 kDa subunit	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        CpipJ_CPIJ008273 transcription factor IIIB 90 kDa subunit	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        CpipJ_CPIJ001573 conserved hypothetical protein	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        CpipJ_CPIJ002688 conserved hypothetical protein	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        CpipJ_CPIJ010477 conserved hypothetical protein	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        CpipJ_CPIJ006165 general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        CpipJ_CPIJ016739 conserved hypothetical protein	K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48] 
E        CpipJ_CPIJ007067 conserved hypothetical protein	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        CpipJ_CPIJ008933 conserved hypothetical protein	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        CpipJ_CPIJ007067 conserved hypothetical protein	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        CpipJ_CPIJ006165 general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        CpipJ_CPIJ010441 snRNA-activating protein complex subunit 3	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
E        CpipJ_CPIJ002445 nubbin	K09364 POU2F; POU domain transcription factor, class 2 
D      Others
E        CpipJ_CPIJ004844 repressor of RNA polymerase III transcription MAF1	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        CpipJ_CPIJ018338 DNA-directed RNA polymerase I largest subunit	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        CpipJ_CPIJ002457 DNA-directed RNA polymerase I 135 kDa polypeptide	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        CpipJ_CPIJ003123 DNA-directed RNA polymerase I 40 kDa polypeptide	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        CpipJ_CPIJ000979 DNA-directed RNA polymerase I subunit D	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        CpipJ_CPIJ009013 conserved hypothetical protein	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        CpipJ_CPIJ002882 conserved hypothetical protein	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        CpipJ_CPIJ009821 RpI12	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        CpipJ_CPIJ015285 DNA-directed RNA polymerase II 23 kDa polypeptide	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        CpipJ_CPIJ018444 DNA-directed RNA polymeraseI	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        CpipJ_CPIJ005206 DNA-directed RNA polymeraseI	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        CpipJ_CPIJ018569 DNA-directed RNA polymeraseI	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        CpipJ_CPIJ002930 RNA polymerase small Zn-binding subunit	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        CpipJ_CPIJ005859 DNA-directed RNA polymerase II 7.6 kDa polypeptide	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        CpipJ_CPIJ001883 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        CpipJ_CPIJ007600 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        CpipJ_CPIJ003789 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        CpipJ_CPIJ018368 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        CpipJ_CPIJ014751 conserved hypothetical protein	K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B 
E        CpipJ_CPIJ012988 conserved hypothetical protein	K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B 
C    Other transcription-related factors
D      UBF
D      Transcription initiation factors
E        CpipJ_CPIJ010951 RNA polymerase I-specific transcription initiation factor RRN3	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        CpipJ_CPIJ014565 conserved hypothetical protein	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        CpipJ_CPIJ010586 transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        CpipJ_CPIJ003095 conserved hypothetical protein	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        CpipJ_CPIJ011038 helicase	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        CpipJ_CPIJ011033 chromatin remodelling complex ATPase chain Iswi	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
E        CpipJ_CPIJ003009 conserved hypothetical protein	K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1 
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        CpipJ_CPIJ006843 transcription initiation factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        CpipJ_CPIJ020226 transcription initiation factor IIE subunit alpha	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
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#Last updated: May 30, 2022