+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Dictyostelium purpureum (cellular slime mold)
%
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E DICPUDRAFT_42334 hypothetical protein K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E DICPUDRAFT_89950 hypothetical protein K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E DICPUDRAFT_92862 protein serine/threonine kinase K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22]
E DICPUDRAFT_29225 p34-cdc2 protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E DICPUDRAFT_150730 hypothetical protein K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
D Cap binding complex
E DICPUDRAFT_55124 hypothetical protein K12882 NCBP1; nuclear cap-binding protein subunit 1
E DICPUDRAFT_154090 hypothetical protein K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E DICPUDRAFT_160005 hypothetical protein K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
D Pre-mRNA cleavage factor IIm (CFIIm)
E DICPUDRAFT_52854 hypothetical protein K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
D Cleavage and polyadenylation specificity factor (CPSF) complex
E DICPUDRAFT_32967 hypothetical protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E DICPUDRAFT_80682 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E DICPUDRAFT_158104 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E DICPUDRAFT_96691 hypothetical protein K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E DICPUDRAFT_148551 hypothetical protein K15542 PFS2; polyadenylation factor subunit 2
E DICPUDRAFT_26651 hypothetical protein K14962 WDR82; COMPASS component SWD2
E DICPUDRAFT_92296 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E DICPUDRAFT_42185 hypothetical protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E DICPUDRAFT_89999 hypothetical protein K14406 CSTF1; cleavage stimulation factor subunit 1
E DICPUDRAFT_153358 hypothetical protein K14408 CSTF3; cleavage stimulation factor subunit 3
E DICPUDRAFT_89712 hypothetical protein K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E DICPUDRAFT_88331 hypothetical protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E DICPUDRAFT_79815 hypothetical protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
E DICPUDRAFT_35231 hypothetical protein K11097 SNRPE; small nuclear ribonucleoprotein E
E DICPUDRAFT_86021 hypothetical protein K11098 SNRPF; small nuclear ribonucleoprotein F
E DICPUDRAFT_39635 hypothetical protein K11099 SNRPG; small nuclear ribonucleoprotein G
E DICPUDRAFT_22541 hypothetical protein K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E DICPUDRAFT_81530 hypothetical protein K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E DICPUDRAFT_80682 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E DICPUDRAFT_158104 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E DICPUDRAFT_89712 hypothetical protein K06100 SYMPK; symplekin
E DICPUDRAFT_151672 hypothetical protein K18710 SLBP; histone RNA hairpin-binding protein
E DICPUDRAFT_94190 hypothetical protein K18710 SLBP; histone RNA hairpin-binding protein
E DICPUDRAFT_80982 hypothetical protein K18710 SLBP; histone RNA hairpin-binding protein
D DRB sensitivity inducing factor (DSIF) complex
E DICPUDRAFT_13929 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E DICPUDRAFT_47274 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E DICPUDRAFT_78256 hypothetical protein K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E DICPUDRAFT_25940 hypothetical protein K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
D Poly(A) addition factors
E DICPUDRAFT_150175 hypothetical protein K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
E DICPUDRAFT_95423 hypothetical protein K13192 RBM26; RNA-binding protein 26
C Other processing factors
D DICPUDRAFT_40129 hypothetical protein K13102 KIN; DNA/RNA-binding protein KIN17
D DICPUDRAFT_154989 hypothetical protein K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D DICPUDRAFT_58394 hypothetical protein K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E DICPUDRAFT_40410 hypothetical protein K12876 RBM8A; RNA-binding protein 8A
E DICPUDRAFT_91311 hypothetical protein K12877 MAGOH; protein mago nashi
E DICPUDRAFT_75578 hypothetical protein K12881 THOC4; THO complex subunit 4
E DICPUDRAFT_25293 DEAD/DEAH box helicase K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E DICPUDRAFT_156303 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E DICPUDRAFT_40315 hypothetical protein K14324 SAP18; histone deacetylase complex subunit SAP18
E DICPUDRAFT_80306 hypothetical protein K14325 RNPS1; RNA-binding protein with serine-rich domain 1
D TREX complex
E DICPUDRAFT_29296 hypothetical protein K12878 THOC1; THO complex subunit 1
E DICPUDRAFT_33784 hypothetical protein K12879 THOC2; THO complex subunit 2
E DICPUDRAFT_38307 hypothetical protein K12880 THOC3; THO complex subunit 3
E DICPUDRAFT_75578 hypothetical protein K12881 THOC4; THO complex subunit 4
E DICPUDRAFT_147137 hypothetical protein K13174 THOC5; THO complex subunit 5
E DICPUDRAFT_157863 hypothetical protein K13174 THOC5; THO complex subunit 5
E DICPUDRAFT_30821 hypothetical protein K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E DICPUDRAFT_156889 hypothetical protein K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E DICPUDRAFT_95477 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
D Nuclear pore complex
E DICPUDRAFT_148649 hypothetical protein K14298 RAE1; mRNA export factor
E DICPUDRAFT_151816 hypothetical protein K14004 SEC13; protein transport protein SEC13
E DICPUDRAFT_152618 hypothetical protein K14304 NUP85; nuclear pore complex protein Nup85
E DICPUDRAFT_35300 hypothetical protein K14305 NUP43; nuclear pore complex protein Nup43
E DICPUDRAFT_52987 hypothetical protein K14308 NUP54; nuclear pore complex protein Nup54
E DICPUDRAFT_148795 hypothetical protein K14306 NUP62; nuclear pore complex protein Nup62
E DICPUDRAFT_148035 hypothetical protein K14309 NUP93; nuclear pore complex protein Nup93
E DICPUDRAFT_81080 hypothetical protein K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E DICPUDRAFT_97855 hypothetical protein K14301 NUP107; nuclear pore complex protein Nup107
E DICPUDRAFT_46595 hypothetical protein K14300 NUP133; nuclear pore complex protein Nup133
E DICPUDRAFT_148347 hypothetical protein K14312 NUP155; nuclear pore complex protein Nup155
E DICPUDRAFT_149471 hypothetical protein K14310 NUP205; nuclear pore complex protein Nup205
E DICPUDRAFT_155557 hypothetical protein K14314 NUP210; nuclear pore complex protein Nup210
E DICPUDRAFT_98923 hypothetical protein K14307 NUPL1; nucleoporin p58/p45
E DICPUDRAFT_56766 hypothetical protein K14320 AAAS; aladin
E DICPUDRAFT_148140 hypothetical protein K18723 GLE1; nucleoporin GLE1
E DICPUDRAFT_39232 hypothetical protein K14284 NXF; nuclear RNA export factor
E DICPUDRAFT_28723 hypothetical protein K14284 NXF; nuclear RNA export factor
E DICPUDRAFT_155279 hypothetical protein K14284 NXF; nuclear RNA export factor
E DICPUDRAFT_82156 hypothetical protein K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E DICPUDRAFT_150415 ranA; ranA, RAN GTPase K07936 RAN; GTP-binding nuclear protein Ran
E DICPUDRAFT_29152 ranB; ranB, RAN GTPase K07936 RAN; GTP-binding nuclear protein Ran
E DICPUDRAFT_42958 hypothetical protein K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E DICPUDRAFT_149370 hypothetical protein K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E DICPUDRAFT_152924 hypothetical protein K18726 FAF2; FAS-associated factor 2
E DICPUDRAFT_32019 hypothetical protein K18726 FAF2; FAS-associated factor 2
E DICPUDRAFT_77902 hypothetical protein K18726 FAF2; FAS-associated factor 2
E DICPUDRAFT_81538 cell division cycle protein 48 K13525 VCP; transitional endoplasmic reticulum ATPase
E DICPUDRAFT_46785 hypothetical protein K14290 XPO1; exportin-1
E DICPUDRAFT_52776 hypothetical protein K18460 XPO7; exportin-7
D eIF4F and regulatory proteins
E DICPUDRAFT_149786 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E DICPUDRAFT_41544 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E DICPUDRAFT_25523 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E DICPUDRAFT_75141 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E DICPUDRAFT_46589 Rac-binding component of scar regulatory complex K05749 CYFIP; cytoplasmic FMR1 interacting protein
E DICPUDRAFT_53135 hypothetical protein K13133 GEMIN5; gem associated protein 5
E DICPUDRAFT_80225 hypothetical protein K13133 GEMIN5; gem associated protein 5
E DICPUDRAFT_95112 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E DICPUDRAFT_150853 hypothetical protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E DICPUDRAFT_158538 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E DICPUDRAFT_41462 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E DICPUDRAFT_53141 RNA-binding region-containing protein (RNP-1) K13126 PABPC; polyadenylate-binding protein
E DICPUDRAFT_152207 hypothetical protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E DICPUDRAFT_99608 hypothetical protein K07575 MCTS; malignant T-cell-amplified sequence
E DICPUDRAFT_96741 hypothetical protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E DICPUDRAFT_78661 hypothetical protein K14411 MSI; RNA-binding protein Musashi
E DICPUDRAFT_5246 hypothetical protein K14416 HBS1; elongation factor 1 alpha-like protein
E DICPUDRAFT_87353 hypothetical protein K06965 PELO; protein pelota
E DICPUDRAFT_24800 hypothetical protein K14396 PABPN1; polyadenylate-binding protein 2
E DICPUDRAFT_85413 hypothetical protein K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E DICPUDRAFT_97283 hypothetical protein K12867 SYF1; pre-mRNA-splicing factor SYF1
E DICPUDRAFT_16980 hypothetical protein K11493 RCC1; regulator of chromosome condensation
E DICPUDRAFT_156945 hypothetical protein K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E DICPUDRAFT_57934 hypothetical protein K03265 ETF1; peptide chain release factor subunit 1
E DICPUDRAFT_36325 hypothetical protein K03267 ERF3; peptide chain release factor subunit 3
E DICPUDRAFT_98882 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E DICPUDRAFT_81715 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E DICPUDRAFT_91511 protein phosphatase 2A catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E DICPUDRAFT_98650 phosphoprotein phosphatase A K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E DICPUDRAFT_47905 protein phosphatase 2A 55 kDa regulatory B subunit K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E DICPUDRAFT_148537 hypothetical protein K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E DICPUDRAFT_95777 hypothetical protein K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E DICPUDRAFT_98770 hypothetical protein K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E DICPUDRAFT_157099 hypothetical protein K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E DICPUDRAFT_53257 hypothetical protein K18734 SMG8; protein SMG8
E DICPUDRAFT_76619 hypothetical protein K18735 SMG9; protein SMG9
E DICPUDRAFT_150853 hypothetical protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E DICPUDRAFT_80883 hypothetical protein K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E DICPUDRAFT_147862 hypothetical protein K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E DICPUDRAFT_155553 hypothetical protein K14844 PUF6; pumilio homology domain family member 6
E DICPUDRAFT_98394 hypothetical protein K10357 MYO5; myosin V
E DICPUDRAFT_42473 hypothetical protein K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E DICPUDRAFT_46519 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
E DICPUDRAFT_91068 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
E DICPUDRAFT_54009 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
E DICPUDRAFT_72679 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
E DICPUDRAFT_73240 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
E DICPUDRAFT_73394 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
E DICPUDRAFT_91170 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
E DICPUDRAFT_91392 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
E DICPUDRAFT_91566 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
E DICPUDRAFT_92254 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
E DICPUDRAFT_92793 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
E DICPUDRAFT_92832 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
E DICPUDRAFT_72359 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
E DICPUDRAFT_92405 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
E DICPUDRAFT_48914 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
E DICPUDRAFT_74418 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
E DICPUDRAFT_74419 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
E DICPUDRAFT_90232 hypothetical protein K05692 ACTB_G1; actin beta/gamma 1
D Trans-acting binding proteins
E DICPUDRAFT_52946 elongation factor 1 alpha K03231 EEF1A; elongation factor 1-alpha
E DICPUDRAFT_49566 hypothetical protein K03233 EEF1G; elongation factor 1-gamma
E DICPUDRAFT_92342 hypothetical protein K03233 EEF1G; elongation factor 1-gamma
E DICPUDRAFT_156785 hypothetical protein K03233 EEF1G; elongation factor 1-gamma
E DICPUDRAFT_97989 hypothetical protein K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E DICPUDRAFT_82723 hypothetical protein K13218 PTBP1; polypyrimidine tract-binding protein 1
E DICPUDRAFT_55687 hypothetical protein K13218 PTBP1; polypyrimidine tract-binding protein 1
D Other mRNA localization factors
E DICPUDRAFT_46589 Rac-binding component of scar regulatory complex K05749 CYFIP; cytoplasmic FMR1 interacting protein
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E DICPUDRAFT_149786 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E DICPUDRAFT_41544 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E DICPUDRAFT_25523 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E DICPUDRAFT_95112 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E DICPUDRAFT_93301 hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E DICPUDRAFT_94592 hypothetical protein K18749 LSM14; protein LSM14
E DICPUDRAFT_44597 hypothetical protein K18752 TNPO1; transportin-1
E DICPUDRAFT_157099 hypothetical protein K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E DICPUDRAFT_91287 hypothetical protein K18753 ZFP36L; butyrate response factor
E DICPUDRAFT_95859 hypothetical protein K04533 HD; huntingtin
E DICPUDRAFT_100116 hypothetical protein K04345 PKA; protein kinase A [EC:2.7.11.11]
E DICPUDRAFT_8174 hypothetical protein K04345 PKA; protein kinase A [EC:2.7.11.11]
E DICPUDRAFT_84547 hypothetical protein K18757 LARP1; la-related protein 1
D P-body specific factors
E DICPUDRAFT_149447 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E DICPUDRAFT_46996 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E DICPUDRAFT_78293 hypothetical protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E DICPUDRAFT_157882 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E DICPUDRAFT_85411 hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E DICPUDRAFT_30992 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E DICPUDRAFT_47407 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E DICPUDRAFT_152939 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E DICPUDRAFT_13870 hypothetical protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E DICPUDRAFT_38323 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E DICPUDRAFT_90215 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E DICPUDRAFT_98394 hypothetical protein K10357 MYO5; myosin V
E DICPUDRAFT_50524 tubulin alpha chain K07374 TUBA; tubulin alpha
E DICPUDRAFT_52108 hypothetical protein K07374 TUBA; tubulin alpha
E DICPUDRAFT_53135 hypothetical protein K13133 GEMIN5; gem associated protein 5
E DICPUDRAFT_80225 hypothetical protein K13133 GEMIN5; gem associated protein 5
E DICPUDRAFT_153294 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E DICPUDRAFT_154363 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E DICPUDRAFT_32526 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E DICPUDRAFT_37779 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E DICPUDRAFT_160469 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E DICPUDRAFT_20033 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E DICPUDRAFT_96430 hypothetical protein K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E DICPUDRAFT_155335 hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E DICPUDRAFT_42055 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E DICPUDRAFT_80227 hypothetical protein K12616 EDC4; enhancer of mRNA-decapping protein 4
E DICPUDRAFT_98882 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E DICPUDRAFT_81715 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3
E DICPUDRAFT_9913 hypothetical protein K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
D Stress granule specific factors
E DICPUDRAFT_158538 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E DICPUDRAFT_41462 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E DICPUDRAFT_53141 RNA-binding region-containing protein (RNP-1) K13126 PABPC; polyadenylate-binding protein
E DICPUDRAFT_31095 hypothetical protein K15026 EIF2A; translation initiation factor 2A
E DICPUDRAFT_156027 hypothetical protein K03253 EIF3B; translation initiation factor 3 subunit B
E DICPUDRAFT_156303 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E DICPUDRAFT_75141 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E DICPUDRAFT_50286 hypothetical protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E DICPUDRAFT_39232 hypothetical protein K14284 NXF; nuclear RNA export factor
E DICPUDRAFT_28723 hypothetical protein K14284 NXF; nuclear RNA export factor
E DICPUDRAFT_155279 hypothetical protein K14284 NXF; nuclear RNA export factor
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E DICPUDRAFT_78293 hypothetical protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E DICPUDRAFT_149447 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E DICPUDRAFT_46996 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E DICPUDRAFT_93301 hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E DICPUDRAFT_80227 hypothetical protein K12616 EDC4; enhancer of mRNA-decapping protein 4
D Lsm complex
E DICPUDRAFT_157882 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E DICPUDRAFT_85411 hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E DICPUDRAFT_30992 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E DICPUDRAFT_47407 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E DICPUDRAFT_152939 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E DICPUDRAFT_13870 hypothetical protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E DICPUDRAFT_38323 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E DICPUDRAFT_90215 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
E DICPUDRAFT_33962 hypothetical protein K07573 CSL4; exosome complex component CSL4
E DICPUDRAFT_76545 hypothetical protein K03679 RRP4; exosome complex component RRP4
E DICPUDRAFT_160096 hypothetical protein K03681 RRP40; exosome complex component RRP40
E DICPUDRAFT_88747 hypothetical protein K11600 RRP41; exosome complex component RRP41
E DICPUDRAFT_85962 hypothetical protein K12590 RRP46; exosome complex component RRP46
E DICPUDRAFT_29826 hypothetical protein K12589 RRP42; exosome complex component RRP42
E DICPUDRAFT_31155 hypothetical protein K12586 RRP43; exosome complex component RRP43
E DICPUDRAFT_154682 hypothetical protein K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E DICPUDRAFT_155003 hypothetical protein K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E DICPUDRAFT_158751 hypothetical protein K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E DICPUDRAFT_153473 hypothetical protein K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E DICPUDRAFT_158214 hypothetical protein K12592 C1D; exosome complex protein LRP1
E DICPUDRAFT_152838 hypothetical protein K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E DICPUDRAFT_157248 hypothetical protein K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E DICPUDRAFT_53548 hypothetical protein K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E DICPUDRAFT_152207 hypothetical protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E DICPUDRAFT_49821 hypothetical protein K12600 SKI3; superkiller protein 3
E DICPUDRAFT_83630 hypothetical protein K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E DICPUDRAFT_153294 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E DICPUDRAFT_154363 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E DICPUDRAFT_32526 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E DICPUDRAFT_37779 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E DICPUDRAFT_160469 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E DICPUDRAFT_20033 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E DICPUDRAFT_156755 hypothetical protein K12606 RCD1; CCR4-NOT transcription complex subunit 9
E DICPUDRAFT_8408 hypothetical protein K12606 RCD1; CCR4-NOT transcription complex subunit 9
E DICPUDRAFT_155443 hypothetical protein K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E DICPUDRAFT_155335 hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E DICPUDRAFT_42055 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E DICPUDRAFT_33426 hypothetical protein K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E DICPUDRAFT_99413 hypothetical protein K26109 NRDE2; nuclear exosome regulator NRDE2
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E DICPUDRAFT_79950 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
E DICPUDRAFT_56059 hypothetical protein K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
E DICPUDRAFT_159167 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E DICPUDRAFT_54877 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E DICPUDRAFT_55132 hypothetical protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E DICPUDRAFT_45156 hypothetical protein K04043 dnaK; molecular chaperone DnaK
E DICPUDRAFT_150163 chaperonin 60 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
E DICPUDRAFT_45674 hypothetical protein K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E DICPUDRAFT_76545 hypothetical protein K03679 RRP4; exosome complex component RRP4
E DICPUDRAFT_33962 hypothetical protein K07573 CSL4; exosome complex component CSL4
D Cofactors
E DICPUDRAFT_88747 hypothetical protein K11600 RRP41; exosome complex component RRP41
E DICPUDRAFT_29826 hypothetical protein K12589 RRP42; exosome complex component RRP42
D Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024