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#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Dictyostelium purpureum (cellular slime mold)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        DICPUDRAFT_149604 hypothetical protein	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        DICPUDRAFT_46649 RNA polymerase II core subunit	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        DICPUDRAFT_155135 RNA polymerase II core subunit	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        DICPUDRAFT_90278 hypothetical protein	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        DICPUDRAFT_85770 RNA polymerase II core subunit	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        DICPUDRAFT_81794 RNA polymerase II core subunit	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        DICPUDRAFT_154339 RNA polymerase II core subunit	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        DICPUDRAFT_148388 hypothetical protein	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        DICPUDRAFT_30399 RNA polymerase II core subunit	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        DICPUDRAFT_32553 hypothetical protein	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        DICPUDRAFT_92459 gtf2a1; hypothetical protein	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        DICPUDRAFT_93915 gtf2a2; transcription initiation factor IIA gamma chain	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        DICPUDRAFT_53091 gtf2b; hypothetical protein	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        DICPUDRAFT_93320 TATA-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        DICPUDRAFT_98741 hypothetical protein	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        DICPUDRAFT_152902 hypothetical protein	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        DICPUDRAFT_74898 hypothetical protein	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        DICPUDRAFT_157560 hypothetical protein	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        DICPUDRAFT_51831 TATA-binding protein-associated-factor	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        DICPUDRAFT_79545 hypothetical protein	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        DICPUDRAFT_12712 hypothetical protein	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        DICPUDRAFT_11975 hypothetical protein	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        DICPUDRAFT_54356 transcription initiation factor TFIID subunit	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        DICPUDRAFT_56584 hypothetical protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        DICPUDRAFT_31794 hypothetical protein	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        DICPUDRAFT_158320 hypothetical protein	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        DICPUDRAFT_38380 hypothetical protein	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        DICPUDRAFT_89879 hypothetical protein	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        DICPUDRAFT_36877 TFIIH subunit	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        DICPUDRAFT_9126 hypothetical protein	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        DICPUDRAFT_31198 hypothetical protein	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        DICPUDRAFT_96425 hypothetical protein	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        DICPUDRAFT_50564 hypothetical protein	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        DICPUDRAFT_42067 hypothetical protein	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        DICPUDRAFT_29225 p34-cdc2 protein	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        DICPUDRAFT_31276 hypothetical protein	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        DICPUDRAFT_41556 hypothetical protein	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        DICPUDRAFT_153426 hypothetical protein	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        DICPUDRAFT_86673 hypothetical protein	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        DICPUDRAFT_86511 hypothetical protein	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        DICPUDRAFT_76538 hypothetical protein	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        DICPUDRAFT_11971 hypothetical protein	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
D      Middle
E        DICPUDRAFT_159085 hypothetical protein	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        DICPUDRAFT_152878 hypothetical protein	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        DICPUDRAFT_151521 hypothetical protein	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        DICPUDRAFT_100091 hypothetical protein	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
D      Tail
E        DICPUDRAFT_150416 hypothetical protein	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
D      CDK-module
E        DICPUDRAFT_58676 protein serine/threonine kinase	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        DICPUDRAFT_47824 hypothetical protein	K15161 CCNC; cyclin-C 
D      Other mediators
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        DICPUDRAFT_26398 histone acetyl transferase	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        DICPUDRAFT_151088 hypothetical protein	K08874 TRRAP; transformation/transcription domain-associated protein 
E        DICPUDRAFT_156942 hypothetical protein	K11359 SPT7; transcriptional activator SPT7 
E        DICPUDRAFT_156868 hypothetical protein	K11314 TADA2A; transcriptional adapter 2-alpha 
E        DICPUDRAFT_154707 hypothetical protein	K11315 TADA3; transcriptional adapter 3 
E        DICPUDRAFT_152902 hypothetical protein	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        DICPUDRAFT_74898 hypothetical protein	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        DICPUDRAFT_157560 hypothetical protein	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        DICPUDRAFT_51831 TATA-binding protein-associated-factor	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        DICPUDRAFT_11975 hypothetical protein	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        DICPUDRAFT_54579 hypothetical protein	K11364 SGF29; SAGA-associated factor 29 
E        DICPUDRAFT_86473 hypothetical protein	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        DICPUDRAFT_52125 CPSF domain-containing protein	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        DICPUDRAFT_97424 hypothetical protein	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        DICPUDRAFT_84008 hypothetical protein	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        DICPUDRAFT_149794 hypothetical protein	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        DICPUDRAFT_83174 hypothetical protein	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        DICPUDRAFT_46519 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_91068 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_54009 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_72679 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_73240 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_73394 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_91170 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_91392 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_91566 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_92254 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_92793 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_92832 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_72359 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_92405 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_48914 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_74418 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_74419 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_90232 hypothetical protein	K05692 ACTB_G1; actin beta/gamma 1 
E        DICPUDRAFT_48789 hypothetical protein	K11340 ACTL6A; actin-like protein 6A 
D      SWI/SNF complex
E        DICPUDRAFT_55110 hypothetical protein	K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] 
E        DICPUDRAFT_84008 hypothetical protein	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
E        DICPUDRAFT_55110 hypothetical protein	K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] 
D      Others
E        DICPUDRAFT_27270 hypothetical protein	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
C    Other transcription-related factors
D      Transcription elongation factors
E        DICPUDRAFT_77009 hypothetical protein	K03145 TFIIS; transcription elongation factor S-II 
E        DICPUDRAFT_13929 hypothetical protein	K15171 SUPT4H1; transcription elongation factor SPT4 
E        DICPUDRAFT_47274 hypothetical protein	K15172 SUPT5H; transcription elongation factor SPT5 
E        DICPUDRAFT_41908 hypothetical protein	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        DICPUDRAFT_32967 hypothetical protein	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        DICPUDRAFT_158104 hypothetical protein	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        DICPUDRAFT_92296 hypothetical protein	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        DICPUDRAFT_89712 hypothetical protein	K06100 SYMPK; symplekin 
E        DICPUDRAFT_42185 hypothetical protein	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        DICPUDRAFT_77914 hypothetical protein	K14845 RAI1; RAT1-interacting protein 
E        DICPUDRAFT_157953 hypothetical protein	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        DICPUDRAFT_52960 hypothetical protein	K15174 PAF1; RNA polymerase II-associated factor 1 
E        DICPUDRAFT_50293 hypothetical protein	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        DICPUDRAFT_157421 hypothetical protein	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        DICPUDRAFT_156220 hypothetical protein	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        DICPUDRAFT_52489 hypothetical protein	K15180 COBRA1; negative elongation factor B 
E        DICPUDRAFT_157917 TH1 family protein	K15181 TH1L; negative elongation factor C/D 
D      Super elongation complex (SEC)
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        DICPUDRAFT_152553 hypothetical protein	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
D      DBIRD complex
D      Others
E        DICPUDRAFT_152429 hypothetical protein	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        DICPUDRAFT_159469 hypothetical protein	K21751 DR1; down-regulator of transcription 1 
E        DICPUDRAFT_33173 hypothetical protein	K21752 DRAP1; Dr1-associated corepressor 
E        DICPUDRAFT_55168 hypothetical protein	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        DICPUDRAFT_95899 hypothetical protein	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        DICPUDRAFT_95030 hypothetical protein	K17498 SPN1; transcription factor SPN1 
E        DICPUDRAFT_94382 hypothetical protein	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        DICPUDRAFT_37287 hypothetical protein	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        DICPUDRAFT_77529 hypothetical protein	K06666 TUP1; general transcriptional corepressor TUP1 
E        DICPUDRAFT_152881 hypothetical protein	K06665 SSN6; general transcriptional corepressor CYC8 
E        DICPUDRAFT_92150 srfA; hypothetical protein	K12412 MCM1; pheromone receptor transcription factor 
E        DICPUDRAFT_33147 hypothetical protein	K24104 GPN; GPN-loop GTPase 
E        DICPUDRAFT_31574 hypothetical protein	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        DICPUDRAFT_147786 RNA polymerase III, largest subunit	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        DICPUDRAFT_53172 RNA polymerase III, second largest subunit	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        DICPUDRAFT_89838 RNA polymerase III subunit	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        DICPUDRAFT_32831 hypothetical protein	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        DICPUDRAFT_45403 hypothetical protein	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        DICPUDRAFT_148777 hypothetical protein	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        DICPUDRAFT_88404 hypothetical protein	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        DICPUDRAFT_20776 hypothetical protein	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        DICPUDRAFT_37036 hypothetical protein	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        DICPUDRAFT_154339 RNA polymerase II core subunit	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        DICPUDRAFT_148388 hypothetical protein	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        DICPUDRAFT_30399 RNA polymerase II core subunit	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        DICPUDRAFT_32553 hypothetical protein	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
C    Basal transcription factors
D      TFIIIA
E        DICPUDRAFT_153661 hypothetical protein	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        DICPUDRAFT_93320 TATA-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        DICPUDRAFT_6794 hypothetical protein	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        DICPUDRAFT_76451 hypothetical protein	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        DICPUDRAFT_150632 hypothetical protein	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        DICPUDRAFT_155061 hypothetical protein	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        DICPUDRAFT_96022 hypothetical protein	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
D      TFIIIC, fungi type
E        DICPUDRAFT_96022 hypothetical protein	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        DICPUDRAFT_155061 hypothetical protein	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        DICPUDRAFT_89485 hypothetical protein	K15206 TFC7; transcription factor C subunit 7 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        DICPUDRAFT_46763 hypothetical protein	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        DICPUDRAFT_35181 hypothetical protein	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
D      Others
E        DICPUDRAFT_93893 hypothetical protein	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        DICPUDRAFT_159076 RNA polymerase I, largest subunit	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        DICPUDRAFT_156179 RNA polymerase I, second largest subunit	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        DICPUDRAFT_89838 RNA polymerase III subunit	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        DICPUDRAFT_32831 hypothetical protein	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        DICPUDRAFT_81424 hypothetical protein	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        DICPUDRAFT_27419 hypothetical protein	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        DICPUDRAFT_36381 hypothetical protein	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        DICPUDRAFT_154339 RNA polymerase II core subunit	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        DICPUDRAFT_148388 hypothetical protein	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        DICPUDRAFT_30399 RNA polymerase II core subunit	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        DICPUDRAFT_32553 hypothetical protein	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
C    Basal transcription factors
D      SL1/TIF-1B
E        DICPUDRAFT_93320 TATA-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
D      Transcription initiation factors
E        DICPUDRAFT_81920 hypothetical protein	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
D      Transcription elongation factors
E        DICPUDRAFT_13929 hypothetical protein	K15171 SUPT4H1; transcription elongation factor SPT4 
E        DICPUDRAFT_47274 hypothetical protein	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        DICPUDRAFT_4822 hypothetical protein	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
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A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        DICPUDRAFT_53091 gtf2b; hypothetical protein	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        DICPUDRAFT_56584 hypothetical protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
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#Last updated: April 9, 2024