+F Repair protein KO #

  DNA Repair and Recombination Proteins - Candidatus Hamiltonella defensa (Acyrthosiphon pisum)

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D HDEF_1277 phrB; deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E HDEF_0455 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E HDEF_1122 mpg_1; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E HDEF_1323 mpg_2; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E HDEF_0358 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HDEF_1596 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D HDEF_0543 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HDEF_2318 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D HDEF_1277 phrB; deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E HDEF_0455 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E HDEF_1122 mpg_1; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E HDEF_1323 mpg_2; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E HDEF_0358 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HDEF_1596 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E HDEF_0641 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E HDEF_0155 recJ; ssDNA exonuclease, 5' --> 3'-specific, Mg-dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E HDEF_0769 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E HDEF_0863 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E HDEF_1815 uvrA; DNA excision repair enzyme subunit, with UvrBC K03701 uvrA; excinuclease ABC subunit A E HDEF_1619 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B E HDEF_1529 uvrC; excinuclease UvrABC, endonuclease subunit K03703 uvrC; excinuclease ABC subunit C E HDEF_0700 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HDEF_0863 polA; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) K02335 polA; DNA polymerase I [EC:2.7.7.7] E HDEF_0769 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F HDEF_0711 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F HDEF_0710 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F HDEF_1841 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F HDEF_0625 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F HDEF_0121 mfd; transcription-repair ATP-dependent coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E HDEF_1628 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E HDEF_0492 mutL_1; enzyme in methyl-directed mismatch repair K03572 mutL; DNA mismatch repair protein MutL E HDEF_p0005 mutL; enzyme in methyl-directed mismatch repair K03572 mutL; DNA mismatch repair protein MutL E HDEF_1386 mutL_2; enzyme in methyl-directed mismatch repair K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E HDEF_1904 mutH_1; putative methyl-directed mismatch repair protein with restriction endonuclease-like domain K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E HDEF_1920 sbcB; exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E HDEF_1282 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E HDEF_1606 xseB; exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E HDEF_0209 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E HDEF_1740 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E HDEF_0220 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E HDEF_2040 holA; DNA polymerase III, delta subunit, probably ATP hydrolase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E HDEF_0452 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E HDEF_0683 dnaQ_1; DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E HDEF_2087 dnaX; DNA polymerase III, tau and gamma subunits; DNA elongation factor III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E HDEF_0500 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D DNA ligase E HDEF_0769 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E HDEF_0700 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HDEF_1536 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HDEF_0575 putative single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HDEF_0919 putative single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HDEF_1639 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E HDEF_1167 vsr; DNA mismatch endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E HDEF_0033 recB; exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E HDEF_0034 recC; exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E HDEF_0032 recD; exonuclease V (RecBCD complex), alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E HDEF_0025 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E HDEF_1940 ruvA; Holliday junction helicase, subunit A K03550 ruvA; holliday junction DNA helicase RuvA E HDEF_1939 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E HDEF_0870 ruvC; Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E HDEF_0885 rus; endonuclease RUS K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E HDEF_0504 priA; primosomal protein N' (factor Y) directs replication fork assembly at D-loops, ATP-dependent K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E HDEF_0584 priB; primosomal replication protein N K02686 priB; primosomal replication protein N E HDEF_1920 sbcB; exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RecFOR pathway proteins E HDEF_0025 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E HDEF_1301 radA; DNA repair/recombination protein K04485 radA; DNA repair protein RadA/Sms E HDEF_0627 recG; DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E HDEF_0155 recJ; ssDNA exonuclease, 5' --> 3'-specific, Mg-dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E HDEF_0534 recO; gap repair protein, part of RecFOR complex K03584 recO; DNA repair protein RecO (recombination protein O) E HDEF_2089 recR; gap repair protein with type I DNA topoisomerase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction K06187 recR; recombination protein RecR E HDEF_0828 recN; protein used in recombination and DNA repair with nucleoside triphosphate hydrolase domain K03631 recN; DNA repair protein RecN (Recombination protein N) E HDEF_0058 rgdC; putative ribonuclease K03554 rdgC; recombination associated protein RdgC E HDEF_1940 ruvA; Holliday junction helicase, subunit A K03550 ruvA; holliday junction DNA helicase RuvA E HDEF_1939 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E HDEF_0870 ruvC; Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F HDEF_1516 gyrA; DNA gyrase (type II topoisomerase), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F HDEF_1742 gyrB; DNA gyrase, subunit B (type II topoisomerase) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F HDEF_1767 topA; DNA topoisomerase type I, omega protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F HDEF_p0014 hu; DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha F HDEF_1521 hupA_3; HU, DNA-binding transcriptional regulator, alpha subunit -3 K05787 hupA; DNA-binding protein HU-alpha F HDEF_1162 hupB; DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F HDEF_0155 recJ; ssDNA exonuclease, 5' --> 3'-specific, Mg-dependent K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F HDEF_0534 recO; gap repair protein, part of RecFOR complex K03584 recO; DNA repair protein RecO (recombination protein O) F HDEF_2089 recR; gap repair protein with type I DNA topoisomerase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction K06187 recR; recombination protein RecR F HDEF_0769 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F HDEF_0367 fis; DNA-binding protein for site-specific recombination and inversion, transcription of rRNA and tRNA operons, and DNA replication K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F HDEF_1831 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit K04764 ihfA; integration host factor subunit alpha F HDEF_0697 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F HDEF_1920 sbcB; exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F HDEF_1815 uvrA; DNA excision repair enzyme subunit, with UvrBC K03701 uvrA; excinuclease ABC subunit A F HDEF_1619 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B F HDEF_2063 hns; transcriptional regulator, DNA-binding protein HLP-II (HU, BH2, HD, NS), increases DNA thermal stability K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D HDEF_0025 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA D HDEF_0828 recN; protein used in recombination and DNA repair with nucleoside triphosphate hydrolase domain K03631 recN; DNA repair protein RecN (Recombination protein N) D HDEF_1536 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D HDEF_0575 putative single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D HDEF_0919 putative single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D HDEF_2303 rep; Rep helicase, a single-stranded DNA-dependent ATPase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] C Modulation of nucleotide pools D HDEF_0543 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HDEF_2318 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D HDEF_0307 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D HDEF_0306 nrdB; ribonucleoside-diphosphate reductase 1, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024