+D GENES KO #

  KEGG Orthology (KO) - Paracoccus denitrificans

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:pde00010] D Pden_2680 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Pden_1950 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Pden_0882 6-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D Pden_1695 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Pden_1876 fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D Pden_1920 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Pden_1698 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Pden_4305 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Pden_1060 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Pden_4465 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Pden_1918 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Pden_2506 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Pden_4060 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Pden_2276 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Pden_0541 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Pden_3892 Pyruvate dehydrogenase (acetyl-transferring) K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D Pden_3891 Transketolase, central region K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D Pden_4983 alpha/beta hydrolase fold protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Pden_3890 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Pden_0611 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_0551 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_4760 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_0016 Alcohol dehydrogenase GroES domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Pden_4206 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pden_2367 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pden_3212 Alcohol dehydrogenase GroES domain protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D Pden_2993 Pyrrolo-quinoline quinone K14028 mdh1; methanol dehydrogenase (cytochrome c) subunit 1 [EC:1.1.2.7] D Pden_2996 methanol dehydrogenase, beta subunit K14029 mdh2; methanol dehydrogenase (cytochrome c) subunit 2 [EC:1.1.2.7] D Pden_3898 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_2755 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_1254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_4971 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3260 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3228 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3211 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_2366 Aldehyde dehydrogenase (NAD(+)) K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D Pden_4550 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_4213 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_2909 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_2751 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Pden_4423 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Pden_2852 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] C 00020 Citrate cycle (TCA cycle) [PATH:pde00020] D Pden_3716 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Pden_1347 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D Pden_3071 aconitase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Pden_4301 aconitase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Pden_4567 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Pden_2961 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Pden_0555 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D Pden_1603 Dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Pden_0554 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Pden_0611 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_0551 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_4760 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_0558 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Pden_0559 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Pden_4309 Acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D Pden_0569 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Pden_0572 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Pden_3022 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Pden_3021 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Pden_0567 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Pden_3020 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Pden_0568 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Pden_4119 fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Pden_1908 fumarase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Pden_0561 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Pden_4144 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D Pden_2852 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Pden_3892 Pyruvate dehydrogenase (acetyl-transferring) K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D Pden_3891 Transketolase, central region K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D Pden_4983 alpha/beta hydrolase fold protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Pden_3890 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:pde00030] D Pden_1950 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Pden_1952 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Pden_1951 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D Pden_2393 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Pden_2572 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Pden_1275 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Pden_1697 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Pden_2499 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D Pden_3668 ribose-5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D Pden_3897 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D Pden_2308 Ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D Pden_0251 PfkB domain protein K00852 rbsK; ribokinase [EC:2.7.1.15] D Pden_2221 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Pden_4423 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Pden_4776 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23] D Pden_3823 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Pden_1955 6-phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D Pden_1245 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Pden_2932 gluconate kinase, SKI family K00851 idnK; gluconokinase [EC:2.7.1.12] D Pden_5059 2-keto-3-deoxygluconate kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D Pden_5084 2-keto-3-deoxygluconate kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D Pden_2195 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Pden_1920 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Pden_1698 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Pden_1695 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Pden_1876 fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D Pden_0882 6-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:pde00040] D Pden_5061 D-mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8] D Pden_5060 Mannitol dehydrogenase, C-terminal domain K00040 uxuB; fructuronate reductase [EC:1.1.1.57] D Pden_2297 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Pden_2572 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Pden_2162 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D Pden_0246 Xylose isomerase domain protein TIM barrel K01805 xylA; xylose isomerase [EC:5.3.1.5] D Pden_4049 protein of unknown function DUF1498 K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15] D Pden_2163 Alcohol dehydrogenase GroES domain protein K05351 E1.1.1.9; D-xylulose reductase [EC:1.1.1.9] D Pden_4865 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Pden_4665 2,5-dioxopentanoate dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Pden_3264 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Pden_1054 Aldehyde dehydrogenase (NAD(+)) K22187 xylA; alpha-ketoglutaric semialdehyde dehydrogenase [EC:1.2.1.-] D Pden_2156 FGGY-family pentulose kinase K00875 rbtK; D-ribulokinase [EC:2.7.1.47] D Pden_4175 carbohydrate kinase, FGGY K00875 rbtK; D-ribulokinase [EC:2.7.1.47] D Pden_2157 short-chain dehydrogenase/reductase SDR K00039 rbtD; ribitol 2-dehydrogenase [EC:1.1.1.56] D Pden_4596 L-fuculose 1-phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:pde00051] D Pden_2946 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Pden_4038 mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP) K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Pden_4824 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8] D Pden_1298 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Pden_1297 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Pden_4596 L-fuculose 1-phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D Pden_0245 5-carboxymethyl-2-hydroxymuconate delta-isomerase K18336 lra6; 2,4-didehydro-3-deoxy-L-rhamnonate hydrolase [EC:3.7.1.26] D Pden_0882 6-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D Pden_1695 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Pden_1876 fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D Pden_0246 Xylose isomerase domain protein TIM barrel K01805 xylA; xylose isomerase [EC:5.3.1.5] D Pden_4177 Mannitol dehydrogenase, C-terminal domain K00045 mtlK; mannitol 2-dehydrogenase [EC:1.1.1.67] D Pden_1920 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Pden_1698 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Pden_4305 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Pden_2849 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Pden_4839 HAD-superfamily hydrolase, subfamily IA, variant 3 K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50] C 00052 Galactose metabolism [PATH:pde00052] D Pden_2751 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Pden_2296 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pden_3553 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pden_5023 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pden_2297 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Pden_4423 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Pden_2680 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Pden_5043 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D Pden_4841 short-chain dehydrogenase/reductase SDR K21620 sorbD; galactitol 2-dehydrogenase [EC:1.1.1.16] D Pden_4848 PfkB domain protein K21621 fk; tagatose kinase [EC:2.7.1.101] D Pden_4847 tagatose-bisphosphate aldolase noncatalytic subunit K21622 tag6PK; D-tagatose 6-phosphate 4-epimerase [EC:5.1.3.40] D Pden_0882 6-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D Pden_4245 galactose 1-dehydrogenase K00035 gal; D-galactose 1-dehydrogenase [EC:1.1.1.48] D Pden_4929 2-keto-3-deoxygalactonate kinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58] D Pden_2748 2-keto-3-deoxygalactonate kinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58] D Pden_4930 2-keto-3-deoxy-phosphogalactonate aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21] D Pden_2749 2-keto-3-deoxy-phosphogalactonate aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21] C 00053 Ascorbate and aldarate metabolism [PATH:pde00053] D Pden_3898 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_2755 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_1254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_4971 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3260 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3228 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3211 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_4246 dihydroxyacid dehydratase K13875 araC; L-arabonate dehydrase [EC:4.2.1.25] D Pden_4666 2-dehydro-3-deoxy-L-arabinonate dehydratase K13876 araD; 2-keto-3-deoxy-L-arabinonate dehydratase [EC:4.2.1.43] D Pden_4865 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Pden_4665 2,5-dioxopentanoate dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Pden_3264 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] C 00500 Starch and sucrose metabolism [PATH:pde00500] D Pden_2297 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Pden_4427 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D Pden_4426 glycogen synthase (ADP-glucose) K00703 glgA; starch synthase [EC:2.4.1.21] D Pden_4428 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Pden_4429 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D Pden_4424 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D Pden_4425 glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68] D Pden_4423 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Pden_2680 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Pden_1950 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Pden_2946 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pde00520] D Pden_1868 Beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Pden_1096 glycoside hydrolase, family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Pden_2477 N-acetylglucosamine 6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D Pden_2474 ATPase, BadF/BadG/BcrA/BcrD type K18676 gspK; glucosamine kinase [EC:2.7.1.8] D Pden_2946 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Pden_0619 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Pden_2476 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Pden_0545 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D Pden_0618 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Pden_2473 conserved hypothetical protein K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] D Pden_1912 protein of unknown function UPF0075 K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D Pden_2797 protein of unknown function UPF0079 K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D Pden_2796 Nucleotidyl transferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D Pden_1961 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Pden_4491 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Pden_0093 polysaccharide biosynthesis protein CapD K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D Pden_3558 polysaccharide biosynthesis protein CapD K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D Pden_0087 acylneuraminate cytidylyltransferase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81] D Pden_3550 acylneuraminate cytidylyltransferase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81] D Pden_2680 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Pden_4423 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Pden_2297 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Pden_2811 UDP-sulfoquinovose synthase K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1] D Pden_2296 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pden_3553 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pden_5023 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pden_5043 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D Pden_2849 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Pden_1950 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Pden_4824 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8] D Pden_4038 mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP) K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Pden_1298 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Pden_1297 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Pden_1296 DegT/DnrJ/EryC1/StrS aminotransferase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1] D Pden_4427 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:pde00620] D Pden_4550 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_4213 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_2909 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_3892 Pyruvate dehydrogenase (acetyl-transferring) K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D Pden_3891 Transketolase, central region K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D Pden_4983 alpha/beta hydrolase fold protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Pden_3890 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Pden_0611 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_0551 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_4760 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_4206 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pden_2367 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pden_0016 Alcohol dehydrogenase GroES domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Pden_3212 Alcohol dehydrogenase GroES domain protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D Pden_2993 Pyrrolo-quinoline quinone K14028 mdh1; methanol dehydrogenase (cytochrome c) subunit 1 [EC:1.1.2.7] D Pden_2996 methanol dehydrogenase, beta subunit K14029 mdh2; methanol dehydrogenase (cytochrome c) subunit 2 [EC:1.1.2.7] D Pden_4208 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Pden_1008 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_1640 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_4275 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_4209 Phosphate butyryltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_2276 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Pden_2339 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Pden_1272 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Pden_1271 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Pden_1987 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Pden_0323 biotin carboxyl carrier protein / biotin carboxylase K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14] D Pden_3898 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_2755 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_1254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_4971 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3260 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3228 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3211 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_2366 Aldehyde dehydrogenase (NAD(+)) K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D Pden_4309 Acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D Pden_5062 L-lactate dehydrogenase (cytochrome) K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D Pden_4075 L-lactate dehydrogenase (cytochrome) K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D Pden_2928 D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12] D Pden_2187 D-lactate dehydrogenase (cytochrome) K00102 LDHD; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4] D Pden_0935 Glyoxalase/bleomycin resistance protein/dioxygenase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D Pden_4708 Glyoxalase/bleomycin resistance protein/dioxygenase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D Pden_3813 Hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Pden_4963 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D Pden_4037 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D Pden_0848 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Pden_2224 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Pden_4144 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D Pden_0561 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Pden_4119 fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Pden_1908 fumarase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Pden_2852 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Pden_0541 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Pden_4051 Malate synthase K01638 aceB; malate synthase [EC:2.3.3.9] D Pden_1364 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D Pden_2663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2870 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2907 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2026 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_4819 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_4062 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Pden_4030 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pde00630] D Pden_1363 isocitrate lyase K01637 ICL; isocitrate/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30] D Pden_4550 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_4213 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_2909 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_4051 Malate synthase K01638 aceB; malate synthase [EC:2.3.3.9] D Pden_1364 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D Pden_0561 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Pden_3716 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D Pden_1347 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D Pden_3071 aconitase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Pden_4301 aconitase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Pden_4567 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Pden_2663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2870 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2907 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2026 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_4819 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2027 3-oxoacyl-[acyl-carrier-protein] reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D Pden_3661 MaoC domain protein dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D Pden_3873 crotonyl-CoA reductase K14446 ccr; crotonyl-CoA carboxylase/reductase [EC:1.3.1.85] D Pden_2178 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D Pden_3875 methylmalonyl-CoA mutase K14447 ecm; ethylmalonyl-CoA mutase [EC:5.4.99.63] D Pden_2840 Acyl-CoA dehydrogenase K14448 mcd; (2S)-methylsuccinyl-CoA dehydrogenase [EC:1.3.8.12] D Pden_0566 L-erythro-3-methylmalyl-CoA dehydratase K14449 mch; 2-methylfumaryl-CoA hydratase [EC:4.2.1.148] D Pden_0799 Citrate (pro-3S)-lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25] D Pden_0563 Citryl-CoA lyase K14451 mcl2; (3S)-malyl-CoA thioesterase [EC:3.1.2.30] D Pden_3684 biotin carboxyl carrier protein / biotin carboxylase K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3] D Pden_3688 propionyl-CoA carboxylase carboxyltransferase subunit K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D Pden_0323 biotin carboxyl carrier protein / biotin carboxylase K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14] D Pden_3681 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D Pden_4399 FAD linked oxidase domain protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D Pden_4398 FAD linked oxidase domain protein K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D Pden_4397 protein of unknown function DUF224, cysteine-rich region domain protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D Pden_4611 Catalase K03781 katE; catalase [EC:1.11.1.6] D Pden_1941 Glyoxylate reductase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D Pden_4963 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D Pden_4037 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D Pden_0617 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Pden_4023 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Pden_0791 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Pden_1699 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D Pden_1700 ribulose 1,5-bisphosphate carboxylase small subunit K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] D Pden_0729 aminotransferase, class V K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Pden_3921 serine-glyoxylate aminotransferase apoenzyme K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Pden_3702 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_1397 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_4462 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_4547 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_0920 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pden_2346 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Pden_2348 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pden_0611 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_0551 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_4760 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_2347 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Pden_4561 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Pden_2195 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Pden_4970 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D Pden_1245 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Pden_1161 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K00122 FDH; formate dehydrogenase [EC:1.17.1.9] D Pden_2854 putative NAD-dependent formate dehydrogenase delta subunit protein K00126 fdsD; formate dehydrogenase subunit delta [EC:1.17.1.9] D Pden_2856 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Pden_2829 formate dehydrogenase (quinone-dependent) catalytic subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Pden_2830 formate dehydrogenase (quinone-dependent) catalytic subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Pden_2828 formate dehydrogenase (quinone-dependent) iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Pden_2857 formate dehydrogenase beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Pden_2827 formate dehydrogenase (quinone-dependent) cytochrome b subunit K00127 fdoI; formate dehydrogenase subunit gamma D Pden_2858 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Pden_2613 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Pden_4904 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Pden_3569 Formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] D Pden_0712 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00640 Propanoate metabolism [PATH:pde00640] D Pden_4550 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_4213 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_2909 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_2225 propionyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D Pden_4208 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Pden_1008 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_1640 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_4275 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_4209 Phosphate butyryltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_4757 branched-chain alpha-keto acid dehydrogenase E1 component K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D Pden_4758 branched-chain alpha-keto acid dehydrogenase E1 component K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D Pden_1604 Transketolase, central region K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D Pden_3049 Transketolase, central region K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D Pden_4759 branched-chain alpha-keto acid dehydrogenase E2 component K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D Pden_0611 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_0551 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_4760 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_2906 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Pden_4991 Alcohol dehydrogenase GroES domain protein K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D Pden_1107 Alcohol dehydrogenase GroES domain protein K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D Pden_2871 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pden_2339 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Pden_1272 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Pden_1271 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Pden_1987 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Pden_0323 biotin carboxyl carrier protein / biotin carboxylase K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14] D Pden_1720 Malonyl-CoA decarboxylase K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9] D Pden_2338 4-aminobutyrate aminotransferase apoenzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D Pden_3684 biotin carboxyl carrier protein / biotin carboxylase K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3] D Pden_3688 propionyl-CoA carboxylase carboxyltransferase subunit K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D Pden_2178 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D Pden_3681 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D Pden_0559 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Pden_0558 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Pden_4479 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pden_1347 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D Pden_1348 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79] D Pden_3071 aconitase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Pden_4301 aconitase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Pden_4567 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Pden_1346 2,3-dimethylmalate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] D Pden_2986 PEP phosphonomutase and related enzymes-like protein K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] D Pden_1363 isocitrate lyase K01637 ICL; isocitrate/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30] C 00650 Butanoate metabolism [PATH:pde00650] D Pden_2663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2870 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2907 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2026 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_4819 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_0197 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Pden_2552 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Pden_5086 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Pden_3225 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Pden_4792 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Pden_0201 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Pden_2871 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pden_4513 short chain enoyl-CoA hydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D Pden_2906 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Pden_3661 MaoC domain protein dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D Pden_5103 Poly-beta-hydroxybutyrate polymerase domain protein K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D Pden_0958 poly(R)-hydroxyalkanoic acid synthase, class I K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D Pden_4207 Poly-beta-hydroxybutyrate polymerase domain protein K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D Pden_0957 polyhydroxyalkanoate depolymerase, intracellular K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75] D Pden_2027 3-oxoacyl-[acyl-carrier-protein] reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D Pden_4600 putative glutaconate CoA-transferase, subunit A K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D Pden_4599 putative CoA transferase, subunit B K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] D Pden_4970 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D Pden_0284 Asp/Glu racemase K01799 nicE; maleate isomerase [EC:5.2.1.1] D Pden_4618 Asp/Glu racemase K01799 nicE; maleate isomerase [EC:5.2.1.1] D Pden_0569 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Pden_0572 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Pden_3022 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Pden_3021 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Pden_0567 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Pden_3020 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Pden_0568 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Pden_2338 4-aminobutyrate aminotransferase apoenzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D Pden_3052 aminotransferase K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96] D Pden_0223 Succinate-semialdehyde dehydrogenase (NAD(P)(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_0243 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_2257 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_4969 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_4416 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_4309 Acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D Pden_3641 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Pden_4878 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Pden_4683 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D Pden_4684 butyryl-CoA:acetate CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D Pden_0932 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D Pden_3275 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_0633 thiamine pyrophosphate enzyme TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_4942 thiamine pyrophosphate enzyme domain protein TPP-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_4594 thiamine pyrophosphate enzyme domain protein TPP-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_2169 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_1092 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_2170 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Pden_4980 Alcohol dehydrogenase, zinc-binding domain protein K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303] D Pden_4982 short-chain dehydrogenase/reductase SDR K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304] D Pden_0206 short-chain dehydrogenase/reductase SDR K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304] C 00660 C5-Branched dibasic acid metabolism [PATH:pde00660] D Pden_3275 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_0633 thiamine pyrophosphate enzyme TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_4942 thiamine pyrophosphate enzyme domain protein TPP-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_4594 thiamine pyrophosphate enzyme domain protein TPP-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_2169 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_1092 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_2170 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Pden_4112 L-carnitine dehydratase/bile acid-inducible protein F K18289 ict-P; itaconate CoA-transferase [EC:2.8.3.- 2.8.3.22] D Pden_0559 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Pden_0558 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Pden_0799 Citrate (pro-3S)-lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25] D Pden_0566 L-erythro-3-methylmalyl-CoA dehydratase K14449 mch; 2-methylfumaryl-CoA hydratase [EC:4.2.1.148] D Pden_2520 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Pden_2522 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Pden_0440 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:pde00562] D Pden_0707 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Pden_4652 Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Pden_2688 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Pden_1678 myo-inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D Pden_1677 Xylose isomerase domain protein TIM barrel K06606 iolI; 2-keto-myo-inositol isomerase [EC:5.3.99.11] D Pden_1674 2-keto-myo-inositol dehydratase K03335 iolE; inosose dehydratase [EC:4.2.1.44] D Pden_1675 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22] D Pden_1672 5-deoxyglucuronate isomerase K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30] D Pden_1676 5-dehydro-2-deoxygluconokinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92] D Pden_4479 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pden_4305 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:pde00190] D Pden_2250 NADH dehydrogenase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D Pden_2249 NADH dehydrogenase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D Pden_2248 NADH dehydrogenase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D Pden_2247 NADH dehydrogenase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D Pden_2246 NADH dehydrogenase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D Pden_2243 NADH dehydrogenase subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D Pden_2241 NADH dehydrogenase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D Pden_2239 NADH dehydrogenase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D Pden_2238 NADH dehydrogenase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D Pden_2235 NADH dehydrogenase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D Pden_2234 NADH dehydrogenase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D Pden_2233 NADH dehydrogenase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D Pden_2232 NADH dehydrogenase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D Pden_2231 NADH dehydrogenase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D Pden_0569 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Pden_0572 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Pden_3022 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Pden_3021 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Pden_0567 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Pden_3020 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Pden_0568 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Pden_2305 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Pden_2306 Cytochrome b/b6, N-terminal domain K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Pden_2307 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D Pden_4320 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Pden_5105 cytochrome ba3 quinol oxidase subunit 4 K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D Pden_4317 cytochrome c oxidase, subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D Pden_1938 Cytochrome-c oxidase K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D Pden_3028 Cytochrome-c oxidase K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D Pden_4321 Cytochrome-c oxidase K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D Pden_4318 cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D Pden_3699 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Pden_1848 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Pden_1847 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Pden_1846 Cbb3-type cytochrome oxidase component K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D Pden_1845 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Pden_5106 cytochrome ba3 quinol oxidase subunit 3 K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D Pden_5107 cytochrome ba3 quinol oxidase subunit 1 apoprotein K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D Pden_5108 cytochrome ba3 quinol oxidase subunit 2 K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D Pden_4010 cytochrome bd quinol oxidase subunit 1 apoprotein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Pden_4011 cytochrome bd quinol oxidase subunit 2 apoprotein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Pden_1937 cytochrome c, class I K08738 CYC; cytochrome c D Pden_1808 cytochrome c, class I K08738 CYC; cytochrome c D Pden_4157 sulfide dehydrogenase (flavocytochrome), cytochrome c subunit K08738 CYC; cytochrome c D Pden_3816 ATP synthase F1 subcomplex alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Pden_3818 ATP synthase F1 subcomplex beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Pden_3817 ATP synthase F1 subcomplex gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Pden_3815 ATP synthase F1 subcomplex delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Pden_3819 ATP synthase F1 subcomplex epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Pden_2879 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Pden_2876 H+-transporting two-sector ATPase, B/B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Pden_2877 H+-transporting two-sector ATPase, B/B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Pden_2878 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Pden_3659 Inorganic diphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] D Pden_1302 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Pden_1594 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Pden_3709 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Pden_1835 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Pden_4500 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:pde00710] D Pden_1699 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D Pden_1700 ribulose 1,5-bisphosphate carboxylase small subunit K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] D Pden_1918 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Pden_1060 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Pden_4465 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Pden_1920 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Pden_1698 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Pden_1695 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Pden_1876 fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D Pden_1275 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Pden_1697 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Pden_3668 ribose-5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D Pden_1696 Phosphoribulokinase K00855 PRK; phosphoribulokinase [EC:2.7.1.19] D Pden_4305 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Pden_2572 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Pden_2499 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D Pden_2852 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Pden_0541 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Pden_0848 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Pden_2224 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Pden_0561 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00720 Other carbon fixation pathways [PATH:pde00720] D Pden_0541 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Pden_4144 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D Pden_0561 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Pden_4119 fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Pden_1908 fumarase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Pden_0569 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Pden_0572 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Pden_3022 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Pden_3021 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Pden_0567 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Pden_3020 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Pden_0568 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Pden_0558 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Pden_0559 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Pden_2663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2870 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2907 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2026 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_4819 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2961 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Pden_3071 aconitase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Pden_4301 aconitase K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Pden_4567 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Pden_2339 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Pden_1272 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Pden_1271 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Pden_1987 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Pden_0799 Citrate (pro-3S)-lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25] D Pden_0566 L-erythro-3-methylmalyl-CoA dehydratase K14449 mch; 2-methylfumaryl-CoA hydratase [EC:4.2.1.148] D Pden_4111 conserved hypothetical protein K09709 meh; 3-methylfumaryl-CoA hydratase [EC:4.2.1.153] D Pden_0194 conserved hypothetical protein K09709 meh; 3-methylfumaryl-CoA hydratase [EC:4.2.1.153] D Pden_0221 conserved hypothetical protein K09709 meh; 3-methylfumaryl-CoA hydratase [EC:4.2.1.153] D Pden_2178 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D Pden_3681 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D Pden_1317 Formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D Pden_1580 Formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D Pden_4905 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Pden_2614 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Pden_2319 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Pden_1008 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_1640 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_4275 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_4209 Phosphate butyryltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_4208 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Pden_4550 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_4213 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_2909 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 00680 Methane metabolism [PATH:pde00680] D Pden_2993 Pyrrolo-quinoline quinone K14028 mdh1; methanol dehydrogenase (cytochrome c) subunit 1 [EC:1.1.2.7] D Pden_2994 amino acid ABC transporter substrate-binding protein, PAAT family K16254 mxaJ; mxaJ protein D Pden_2995 cytochrome c, class I K16255 mxaG; cytochrome c-L D Pden_2996 methanol dehydrogenase, beta subunit K14029 mdh2; methanol dehydrogenase (cytochrome c) subunit 2 [EC:1.1.2.7] D Pden_2999 MxaA protein, putative K16256 mxaA; mxaA protein D Pden_3000 von Willebrand factor, type A K16257 mxaC; mxaC protein D Pden_3001 conserved hypothetical protein K16258 mxaK; mxaK protein D Pden_3002 von Willebrand factor, type A K16259 mxaL; mxaL protein D Pden_3003 MxaD protein, putative K16260 mxaD; mxaD protein D Pden_0020 Pyrrolo-quinoline quinone K23995 xoxF; lanthanide-dependent methanol dehydrogenase [EC:1.1.2.10] D Pden_1186 glutathione-independent formaldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D Pden_0015 glutathione-dependent formaldehyde-activating, GFA K03396 gfa; S-(hydroxymethyl)glutathione synthase [EC:4.4.1.22] D Pden_0016 Alcohol dehydrogenase GroES domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Pden_0019 Carboxylesterase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D Pden_1161 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K00122 FDH; formate dehydrogenase [EC:1.17.1.9] D Pden_2856 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Pden_2829 formate dehydrogenase (quinone-dependent) catalytic subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Pden_2830 formate dehydrogenase (quinone-dependent) catalytic subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Pden_2828 formate dehydrogenase (quinone-dependent) iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Pden_2857 formate dehydrogenase beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Pden_2827 formate dehydrogenase (quinone-dependent) cytochrome b subunit K00127 fdoI; formate dehydrogenase subunit gamma D Pden_2858 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Pden_2854 putative NAD-dependent formate dehydrogenase delta subunit protein K00126 fdsD; formate dehydrogenase subunit delta [EC:1.17.1.9] D Pden_0920 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pden_0729 aminotransferase, class V K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Pden_3921 serine-glyoxylate aminotransferase apoenzyme K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Pden_2195 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Pden_4060 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Pden_0561 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Pden_0799 Citrate (pro-3S)-lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25] D Pden_1920 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Pden_1698 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Pden_1695 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Pden_1876 fructose-1,6-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D Pden_0882 6-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D Pden_4733 methylamine dehydrogenase light chain K15228 mauA; methylamine dehydrogenase light chain [EC:1.4.9.1] D Pden_4730 methylamine dehydrogenase heavy chain K15229 mauB; methylamine dehydrogenase heavy chain [EC:1.4.9.1] D Pden_1703 quinohemoprotein amine dehydrogenase, 60 kDa subunit K08685 qhpA; quinohemoprotein amine dehydrogenase [EC:1.4.9.1] D Pden_4909 sarcosine oxidase, beta subunit family K22084 mgdA; methylglutamate dehydrogenase subunit A [EC:1.5.99.5] D Pden_4908 Sarcosine oxidase, delta subunit, heterotetrameric K22085 mgdB; methylglutamate dehydrogenase subunit B [EC:1.5.99.5] D Pden_4907 sarcosine oxidase, alpha subunit family K22086 mgdC; methylglutamate dehydrogenase subunit C [EC:1.5.99.5] D Pden_4906 Sarcosine oxidase, gamma subunit K22087 mgdD; methylglutamate dehydrogenase subunit D [EC:1.5.99.5] D Pden_4208 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Pden_1008 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_1640 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_4275 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_4209 Phosphate butyryltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_4550 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_4213 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_2909 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_2506 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Pden_0814 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pden_3433 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pden_4597 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pden_0813 phosphoserine aminotransferase apoenzyme K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Pden_0812 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D Pden_1114 FO synthase subunit 1 K11779 fbiC; FO synthase [EC:2.5.1.147 4.3.1.32] D Pden_1115 FO synthase subunit 2 K11779 fbiC; FO synthase [EC:2.5.1.147 4.3.1.32] D Pden_1117 phospholactate guanylyltransferase K14941 cofC; 2-phospho-L-lactate/phosphoenolpyruvate guanylyltransferase [EC:2.7.7.68 2.7.7.105] D Pden_1116 LPPG:FO 2-phospho-L-lactate transferase K11212 cofD; LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28] D Pden_1118 coenzyme F420-0 gamma-glutamyl ligase K12234 cofE; coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34] C 00910 Nitrogen metabolism [PATH:pde00910] D Pden_3569 Formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] D Pden_4453 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Pden_4237 nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Pden_4236 respiratory nitrate reductase alpha subunit apoprotein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D Pden_4235 respiratory nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D Pden_4233 respiratory nitrate reductase gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D Pden_4721 periplasmic nitrate reductase subunit NapA apoprotein K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D Pden_4722 periplasmic nitrate reductase subunit NapB K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D Pden_4449 assimilatory nitrate reductase (NADH) alpha subunit apoprotein K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-] D Pden_4452 assimilatory nitrite reductase (NAD(P)H) large subunit precursor K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4] D Pden_4451 assimilatory nitrite reductase (NAD(P)H) small subunit K26138 nasE; nitrite reductase [NAD(P)H] small subunit [EC:1.7.1.4] D Pden_2487 dissimilatory nitrite reductase (NO-forming), cytochrome cd1 type apoprotein K15864 nirS; nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1] D Pden_2483 nitric oxide reductase, NorB subunit apoprotein K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D Pden_2484 nitric oxide reductase, NorC subunit apoprotein K02305 norC; nitric oxide reductase subunit C D Pden_4219 nitrous oxide reductase apoprotein K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4] D Pden_3785 2-nitropropane dioxygenase, NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D Pden_2823 2-nitropropane dioxygenase, NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D Pden_3872 glutamate dehydrogenase (NADP) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Pden_3702 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_1397 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_4462 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_4547 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_0488 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Pden_0490 glutamate synthase (NADPH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Pden_2705 Carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:pde00920] D Pden_1798 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D Pden_4344 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D Pden_4343 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Pden_1799 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Pden_4342 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Pden_1800 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Pden_1797 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Pden_4341 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Pden_5006 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pden_4109 putative sulfonate/nitrate transport system substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pden_5012 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pden_4881 Substrate-binding region of ABC-type glycine betaine transport system K15553 ssuA; sulfonate transport system substrate-binding protein D Pden_5005 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pden_4108 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pden_4882 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pden_5011 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pden_5004 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pden_4107 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pden_5010 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pden_4883 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pden_5013 Alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D Pden_5119 NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D Pden_4396 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D Pden_4395 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Pden_2300 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Pden_0656 phosphoadenylylsulfate reductase (thioredoxin) K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D Pden_4153 diheme cytochrome SoxA (sulfur oxidation) K17222 soxA; L-cysteine S-thiosulfotransferase [EC:2.8.5.2] D Pden_4150 monoheme cytochrome SoxX (sulfur oxidation) K17223 soxX; L-cysteine S-thiosulfotransferase [EC:2.8.5.2] D Pden_2358 conserved hypothetical protein K17226 soxY; sulfur-oxidizing protein SoxY D Pden_4151 thiosulfate-binding protein SoxY K17226 soxY; sulfur-oxidizing protein SoxY D Pden_4152 sulfur compound chelating protein SoxZ K17227 soxZ; sulfur-oxidizing protein SoxZ D Pden_4154 sulfate thiol esterase SoxB K17224 soxB; S-sulfosulfanyl-L-cysteine sulfohydrolase [EC:3.1.6.20] D Pden_4155 sulfur dehydrogenase subunit SoxC K17225 soxC; sulfane dehydrogenase subunit SoxC D Pden_4156 sulfur dehydrogenase subunit SoxD K22622 soxD; S-disulfanyl-L-cysteine oxidoreductase SoxD [EC:1.8.2.6] D Pden_3290 oxidoreductase FAD/NAD(P)-binding domain protein K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D Pden_0655 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D Pden_4694 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4] D Pden_4158 cytochrome-dependent sulfide dehydrogenase (flavoprotein) K17229 fccB; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [EC:1.8.2.3] D Pden_0631 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Pden_2885 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Pden_5016 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Pden_1293 serine acetyltransferase CysE, putative K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Pden_3861 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] D Pden_4499 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D Pden_5069 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Pden_4298 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D Pden_1108 AMP-dependent synthetase and ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D Pden_4590 AMP-dependent synthetase and ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D Pden_2868 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D Pden_3224 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D Pden_0434 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D Pden_2560 Enoyl-CoA hydratase/isomerase K20036 dmdD; (methylthio)acryloyl-CoA hydratase [EC:4.2.1.155] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:pde00061] D Pden_2339 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Pden_1272 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Pden_1271 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Pden_1987 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Pden_0323 biotin carboxyl carrier protein / biotin carboxylase K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14] D Pden_1242 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein D Pden_1768 acyl carrier protein K02078 acpP; acyl carrier protein D Pden_1770 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Pden_0669 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Pden_1861 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Pden_1650 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Pden_2438 3-oxoacyl-(acyl carrier protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Pden_2904 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Pden_2349 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_1769 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_3419 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_1255 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_3541 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_5053 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_1649 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D Pden_3906 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Pden_0857 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Pden_1651 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Pden_0048 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:pde00071] D Pden_2663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2870 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2907 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2026 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_4819 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_3226 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Pden_2871 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pden_3225 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Pden_4792 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Pden_0201 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Pden_2906 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Pden_5091 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Pden_4412 acyl-CoA dehydrogenase domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Pden_0048 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pden_2098 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D Pden_2324 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D Pden_3463 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D Pden_0016 Alcohol dehydrogenase GroES domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Pden_4206 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pden_2367 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pden_3898 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_2755 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_1254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_4971 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3260 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3228 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3211 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00074 Mycolic acid biosynthesis [PATH:pde00074] D Pden_0323 biotin carboxyl carrier protein / biotin carboxylase K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14] D Pden_0421 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D Pden_1242 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein D Pden_1768 acyl carrier protein K02078 acpP; acyl carrier protein D Pden_1770 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis [PATH:pde00121] D Pden_1754 short-chain dehydrogenase/reductase SDR K00076 hdhA; 7-alpha-hydroxysteroid dehydrogenase [EC:1.1.1.159] C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:pde00561] D Pden_4561 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Pden_2195 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Pden_3898 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_2755 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_1254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_4971 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3260 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3228 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3211 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3212 Alcohol dehydrogenase GroES domain protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D Pden_2618 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Pden_4386 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Pden_1860 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Pden_2553 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Pden_2015 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Pden_2811 UDP-sulfoquinovose synthase K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1] C 00564 Glycerophospholipid metabolism [PATH:pde00564] D Pden_1999 Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D Pden_4393 homodimeric glycerol 3-phosphate dehydrogenase (quinone) K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D Pden_2553 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Pden_2015 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Pden_5025 Glycerol-3-phosphate cytidylyltransferase K00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39] D Pden_1831 alpha/beta hydrolase fold protein K01048 pldB; lysophospholipase [EC:3.1.1.5] D Pden_4690 phosphatidyl-N-methylethanolamine N-methyltransferase K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71] D Pden_3996 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Pden_2935 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Pden_0811 CDP-diacylglycerol-choline O-phosphatidyltransferase K01004 pcs; phosphatidylcholine synthase [EC:2.7.8.24] D Pden_4691 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Pden_4692 phosphatidylserine decarboxylase related protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D Pden_2342 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D Pden_3666 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D Pden_1986 cardiolipin synthetase 2 K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:pde00592] D Pden_3226 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids D Pden_0520 lipolytic enzyme, G-D-S-L family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:pde00230] D Pden_2221 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Pden_4423 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Pden_3823 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Pden_3939 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Pden_4029 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D Pden_3927 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Pden_3971 phosphoribosylformylglycinamidine synthase subunit II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D Pden_2860 phosphoribosylformylglycinamidine synthase, purS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D Pden_2962 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Pden_3926 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D Pden_2201 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D Pden_2202 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Pden_2861 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D Pden_4463 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Pden_2718 IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Pden_3620 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Pden_2882 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Pden_2731 3'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Pden_0524 purine nucleotide phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D Pden_2211 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Pden_0592 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Pden_1746 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Pden_0011 dITPase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Pden_0855 Xanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D Pden_4257 molybdopterin dehydrogenase, FAD-binding protein K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4] D Pden_4258 xanthine dehydrogenase, molybdenum binding subunit apoprotein / Xanthine oxidase K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4] D Pden_3696 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Pden_1435 glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Pden_4260 guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D Pden_4251 CMP/dCMP deaminase, zinc-binding protein K01487 guaD; guanine deaminase [EC:3.5.4.3] D Pden_3936 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D Pden_4377 ribonucleoside-diphosphate reductase class Ib alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Pden_1384 ribonucleoside-diphosphate reductase class II K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Pden_0951 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Pden_4378 ribonucleoside-diphosphate reductase class Ib beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D Pden_2989 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Pden_0927 putative deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D Pden_2783 metal dependent phosphohydrolase K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89] D Pden_1400 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Pden_1303 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Pden_3989 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Pden_1593 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Pden_0074 adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D Pden_0603 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Pden_2220 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D Pden_0404 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D Pden_2836 Adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D Pden_1811 5'-Nucleotidase domain protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D Pden_4509 conserved hypothetical protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D Pden_0781 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Pden_1418 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Pden_4396 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D Pden_4395 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Pden_3915 Transthyretin K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D Pden_0679 Asp/Glu racemase K16841 hpxA; allantoin racemase [EC:5.1.99.3] D Pden_3514 Allantoinase K01466 allB; allantoinase [EC:3.5.2.5] D Pden_3795 polysaccharide deacetylase K16842 hpxB; allantoinase [EC:3.5.2.5] D Pden_3794 protein of unknown function DUF861, cupin_3 K14977 ylbA; (S)-ureidoglycine aminohydrolase [EC:3.5.3.26] D Pden_2103 Ureidoglycolate hydrolase K01483 allA; ureidoglycolate lyase [EC:4.3.2.3] D Pden_2753 5-carboxymethyl-2-hydroxymuconate delta-isomerase K16856 ugl; ureidoglycolate lyase [EC:4.3.2.3] D Pden_1208 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D Pden_1209 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D Pden_1211 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00240 Pyrimidine metabolism [PATH:pde00240] D Pden_1879 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Pden_2165 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Pden_2555 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Pden_4467 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D Pden_2554 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D Pden_3483 dihydroorotate oxidase B, catalytic subunit K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D Pden_2884 dihydroorotate oxidase A K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D Pden_4468 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D Pden_0060 orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D Pden_3993 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D Pden_1746 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Pden_1418 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Pden_1791 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D Pden_3711 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D Pden_3784 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D Pden_2882 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Pden_2731 3'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Pden_2219 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D Pden_1811 5'-Nucleotidase domain protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D Pden_4509 conserved hypothetical protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D Pden_1813 Indigoidine synthase A family protein K16329 psuG; pseudouridylate synthase [EC:4.2.1.70] D Pden_2223 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D Pden_2989 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Pden_1865 2-deoxycytidine 5-triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D Pden_4377 ribonucleoside-diphosphate reductase class Ib alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Pden_1384 ribonucleoside-diphosphate reductase class II K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Pden_0951 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Pden_4378 ribonucleoside-diphosphate reductase class Ib beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D Pden_2783 metal dependent phosphohydrolase K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89] D Pden_2144 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D Pden_1946 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Pden_2222 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D Pden_1744 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D Pden_0934 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D Pden_1112 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Pden_4616 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Pden_3434 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Pden_3515 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Pden_1113 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Pden_4267 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Pden_1042 alpha/beta hydrolase fold protein K09023 rutD; aminoacrylate hydrolase [EC:3.5.1.-] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:pde00250] D Pden_0938 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_3420 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_0630 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Pden_4431 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Pden_1153 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Pden_4244 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Pden_3554 hypothetical protein K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Pden_0729 aminotransferase, class V K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Pden_3921 serine-glyoxylate aminotransferase apoenzyme K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Pden_1729 L-alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Pden_1095 Aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D Pden_0939 aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D Pden_0499 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Pden_2022 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Pden_0603 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Pden_4463 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Pden_2555 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Pden_2338 4-aminobutyrate aminotransferase apoenzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D Pden_3052 aminotransferase K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96] D Pden_0223 Succinate-semialdehyde dehydrogenase (NAD(P)(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_0243 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_2257 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_4969 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_4416 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_0488 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Pden_0490 glutamate synthase (NADPH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Pden_3872 glutamate dehydrogenase (NADP) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Pden_0943 L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Pden_3702 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_1397 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_4462 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_4547 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_1879 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Pden_2165 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Pden_2962 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Pden_0619 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Pden_2476 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Pden_3939 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:pde00260] D Pden_0862 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Pden_2775 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Pden_3678 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Pden_4315 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Pden_3664 L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D Pden_0920 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pden_0729 aminotransferase, class V K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Pden_3921 serine-glyoxylate aminotransferase apoenzyme K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Pden_4963 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D Pden_4037 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D Pden_4561 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Pden_2195 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Pden_2506 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Pden_0814 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pden_3433 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pden_4597 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pden_0813 phosphoserine aminotransferase apoenzyme K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Pden_0812 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D Pden_1822 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D Pden_2346 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Pden_2348 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pden_0611 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_0551 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_4760 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_2347 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Pden_1018 creatinase K08688 E3.5.3.3; creatinase [EC:3.5.3.3] D Pden_1692 creatinase K08688 E3.5.3.3; creatinase [EC:3.5.3.3] D Pden_1738 creatinase K08688 E3.5.3.3; creatinase [EC:3.5.3.3] D Pden_3409 creatinase K08688 E3.5.3.3; creatinase [EC:3.5.3.3] D Pden_4691 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Pden_1044 glucose-methanol-choline oxidoreductase K00108 betA; choline dehydrogenase [EC:1.1.99.1] D Pden_1896 choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1] D Pden_1897 betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D Pden_4897 Rieske (2Fe-2S) domain protein K00479 gbcA; glycine betaine monooxygenase A [EC:1.14.13.251] D Pden_4896 oxidoreductase FAD/NAD(P)-binding domain protein K21832 gbcB; glycine betaine monooxygenase B [EC:1.14.13.251] D Pden_1940 FAD dependent oxidoreductase K00315 DMGDH; dimethylglycine dehydrogenase [EC:1.5.8.4] D Pden_0515 sarcosine oxidase, alpha subunit family K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1] D Pden_0512 sarcosine oxidase, beta subunit family K00303 soxB; sarcosine oxidase, subunit beta [EC:1.5.3.24 1.5.3.1] D Pden_0516 Sarcosine oxidase, gamma subunit K00305 soxG; sarcosine oxidase, subunit gamma [EC:1.5.3.24 1.5.3.1] D Pden_0514 Sarcosine oxidase, delta subunit, heterotetrameric K00304 soxD; sarcosine oxidase, subunit delta [EC:1.5.3.24 1.5.3.1] D Pden_4132 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Pden_0497 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Pden_3920 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Pden_0285 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Pden_0333 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Pden_3791 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Pden_0287 peptidase M24 K15783 doeA; ectoine hydrolase [EC:3.5.4.44] D Pden_0288 Succinylglutamate desuccinylase/aspartoacylase K15784 doeB; N2-acetyl-L-2,4-diaminobutanoate deacetylase [EC:3.5.1.125] D Pden_0290 aminotransferase K15785 doeD; L-2,4-diaminobutyrate transaminase [EC:2.6.1.76] D Pden_0289 succinate semialdehyde dehydrogenase K15786 doeC; aspartate-semialdehyde dehydrogenase [EC:1.2.1.-] C 00270 Cysteine and methionine metabolism [PATH:pde00270] D Pden_2885 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Pden_5016 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Pden_1293 serine acetyltransferase CysE, putative K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Pden_3861 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] D Pden_0648 aminotransferase, class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Pden_1935 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Pden_3952 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Pden_1355 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Pden_1873 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Pden_2777 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D Pden_2211 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Pden_2807 conserved hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D Pden_2061 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_3372 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_0263 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_3182 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_2682 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Pden_0862 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Pden_2775 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Pden_3678 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Pden_4499 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D Pden_5069 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Pden_1933 O-acetylhomoserine sulfhydrolase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D Pden_4298 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D Pden_2602 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Pden_1464 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Pden_2845 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D Pden_3960 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Pden_0938 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_3420 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_0630 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Pden_0631 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Pden_0561 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Pden_4132 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Pden_0814 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pden_3433 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pden_4597 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pden_0813 phosphoserine aminotransferase apoenzyme K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:pde00280] D Pden_2602 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Pden_1464 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Pden_4625 Glu/Leu/Phe/Val dehydrogenase, dimerization region K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D Pden_4757 branched-chain alpha-keto acid dehydrogenase E1 component K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D Pden_4758 branched-chain alpha-keto acid dehydrogenase E1 component K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D Pden_1604 Transketolase, central region K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D Pden_3049 Transketolase, central region K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D Pden_4759 branched-chain alpha-keto acid dehydrogenase E2 component K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D Pden_0611 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_0551 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_4760 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_2906 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Pden_5091 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D Pden_3633 isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D Pden_2871 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pden_3226 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Pden_3684 biotin carboxyl carrier protein / biotin carboxylase K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3] D Pden_3688 propionyl-CoA carboxylase carboxyltransferase subunit K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D Pden_0323 biotin carboxyl carrier protein / biotin carboxylase K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14] D Pden_2178 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D Pden_3681 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D Pden_3216 tartronate semialdehyde reductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D Pden_3256 tartronate semialdehyde reductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D Pden_4003 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D Pden_4482 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D Pden_4479 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Pden_3898 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_2755 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_1254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_4971 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3260 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3228 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3211 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_1719 AMP-dependent synthetase and ligase K18661 matB; malonyl-CoA/methylmalonyl-CoA synthetase [EC:6.2.1.76 6.2.1.-] D Pden_3639 3-methylcrotonoyl-CoA carboxylase, alpha subunit K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D Pden_3637 Propionyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D Pden_3642 methylglutaconyl-CoA hydratase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18] D Pden_3641 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Pden_4878 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Pden_4683 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D Pden_4684 butyryl-CoA:acetate CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D Pden_2663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2870 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2907 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2026 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_4819 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pde00290] D Pden_0497 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Pden_3920 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Pden_0285 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Pden_2520 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Pden_2522 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Pden_0440 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Pden_3275 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_0633 thiamine pyrophosphate enzyme TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_4942 thiamine pyrophosphate enzyme domain protein TPP-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_4594 thiamine pyrophosphate enzyme domain protein TPP-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_2169 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_1092 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_2170 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Pden_1760 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Pden_2933 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Pden_1984 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Pden_2602 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Pden_1464 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Pden_4625 Glu/Leu/Phe/Val dehydrogenase, dimerization region K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D Pden_4062 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Pden_4030 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:pde00300] D Pden_3678 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Pden_0862 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Pden_2775 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Pden_0704 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Pden_4876 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Pden_4753 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Pden_3424 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Pden_2798 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D Pden_2514 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D Pden_2041 acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Pden_2842 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Pden_3894 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Pden_0395 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Pden_2020 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Pden_1290 Orn/DAP/Arg decarboxylase 2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Pden_4380 putative transcriptional regulator, GntR family K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D Pden_2709 saccharopine dehydrogenase (NAD+, L-lysine-forming) K00290 LYS1; saccharopine dehydrogenase (NAD+, L-lysine forming) [EC:1.5.1.7] D Pden_0586 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Pden_0587 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:pde00310] D Pden_2709 saccharopine dehydrogenase (NAD+, L-lysine-forming) K00290 LYS1; saccharopine dehydrogenase (NAD+, L-lysine forming) [EC:1.5.1.7] D Pden_1603 Dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Pden_0554 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Pden_0611 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_0551 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_4760 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_4412 acyl-CoA dehydrogenase domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Pden_2871 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pden_2663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2870 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2907 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2026 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_4819 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_0223 Succinate-semialdehyde dehydrogenase (NAD(P)(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_0243 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_2257 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_4969 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_4416 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_1666 L-lysine 2,3-aminomutase K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2] D Pden_0798 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Pden_3425 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Pden_4866 Malate/L-lactate dehydrogenase K13609 dpkA; delta1-piperideine-2-carboxylate reductase [EC:1.5.1.21] D Pden_4855 Malate/L-lactate dehydrogenase K13609 dpkA; delta1-piperideine-2-carboxylate reductase [EC:1.5.1.21] D Pden_3898 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_2755 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_1254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_4971 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3260 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3228 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3211 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:pde00220] D Pden_2039 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Pden_0499 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Pden_2022 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Pden_2047 arginase K01476 rocF; arginase [EC:3.5.3.1] D Pden_1162 Arginase/agmatinase/formiminoglutamase K01476 rocF; arginase [EC:3.5.3.1] D Pden_1208 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D Pden_1209 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D Pden_1211 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] D Pden_2962 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Pden_3702 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_1397 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_4462 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_4547 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_1879 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Pden_2165 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Pden_3872 glutamate dehydrogenase (NADP) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Pden_0938 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_3420 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_0630 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Pden_2597 glutamate N-acetyltransferase / N-acetylglutamate synthase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D Pden_0880 N-acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D Pden_1656 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D Pden_2041 acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Pden_3458 acetylornithine deacetylase ArgE, Metallo peptidase, MEROPS family M20A K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] D Pden_4976 acetylornithine deacetylase / acetylornithine deacetylase ArgE, Metallo peptidase. MEROPS family M20A K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:pde00330] D Pden_1019 Creatininase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10] D Pden_0472 5-oxoprolinase (ATP-hydrolyzing) K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D Pden_4974 5-oxoprolinase (ATP-hydrolyzing) K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D Pden_4408 5-oxoprolinase (ATP-hydrolyzing) K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D Pden_4409 5-oxoprolinase (ATP-hydrolyzing) K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14] D Pden_4352 5-oxoprolinase (ATP-hydrolyzing) K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14] D Pden_4973 5-oxoprolinase (ATP-hydrolyzing) K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14] D Pden_1018 creatinase K08688 E3.5.3.3; creatinase [EC:3.5.3.3] D Pden_1692 creatinase K08688 E3.5.3.3; creatinase [EC:3.5.3.3] D Pden_1738 creatinase K08688 E3.5.3.3; creatinase [EC:3.5.3.3] D Pden_3409 creatinase K08688 E3.5.3.3; creatinase [EC:3.5.3.3] D Pden_1151 agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D Pden_2321 Orn/DAP/Arg decarboxylase 2 K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Pden_2956 carboxynorspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96] D Pden_3898 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_2755 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_1254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_4971 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3260 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3228 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3211 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3053 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Pden_1398 gamma-glutamylputrescine oxidase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D Pden_4752 aldehyde dehydrogenase K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99] D Pden_4934 BFD domain protein (2Fe-2S)-binding domain protein K24954 ooxA; octopine oxidase subunit A D Pden_4936 FAD dependent oxidoreductase K24955 ooxB; octopine oxidase subunit B D Pden_2047 arginase K01476 rocF; arginase [EC:3.5.3.1] D Pden_1162 Arginase/agmatinase/formiminoglutamase K01476 rocF; arginase [EC:3.5.3.1] D Pden_2198 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Pden_4871 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Pden_1192 NADP oxidoreductase, coenzyme F420-dependent K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Pden_0943 L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Pden_4637 ornithine cyclodeaminase K01750 E4.3.1.12; ornithine cyclodeaminase [EC:4.3.1.12] D Pden_4055 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Pden_4503 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Pden_2590 prolyl aminopeptidase, Serine peptidase, MEROPS family S33 K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Pden_0938 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_3420 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_0630 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Pden_0798 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Pden_3425 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Pden_1045 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4] D Pden_1184 proline racemase K22548 lhpL; trans-L-3-hydroxyproline dehydratase [EC:4.2.1.77] D Pden_4854 predicted aconitase subunit 1 K09123 lhpI; cis-L-3-hydroxyproline dehydratase [EC:4.2.1.171] C 00340 Histidine metabolism [PATH:pde00340] D Pden_1923 ATP phosphoribosyltransferase catalytic subunit K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D Pden_1924 ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D Pden_1888 phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D Pden_4080 phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D Pden_1336 phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D Pden_1886 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D Pden_1884 imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D Pden_1887 imidazole glycerol phosphate synthase subunit hisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D Pden_1883 imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D Pden_0652 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pden_1409 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pden_1959 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D Pden_3519 phenylalanine/histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Pden_0711 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Pden_0715 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D Pden_3517 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D Pden_0710 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D Pden_0709 formiminoglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13] D Pden_0712 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] D Pden_3898 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_2755 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_1254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_4971 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3260 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3228 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3211 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00350 Tyrosine metabolism [PATH:pde00350] D Pden_0938 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_3420 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_0630 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Pden_0652 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pden_1409 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pden_1664 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Pden_3547 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D Pden_0913 Homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D Pden_3549 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D Pden_0174 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D Pden_3548 fumarylacetoacetate hydrolase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D Pden_0016 Alcohol dehydrogenase GroES domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Pden_4206 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pden_2367 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pden_3272 HpcH/HpaI aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D Pden_0223 Succinate-semialdehyde dehydrogenase (NAD(P)(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_0243 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_2257 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_4969 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_4416 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_0167 gentisate 1,2-dioxygenase K00450 E1.13.11.4; gentisate 1,2-dioxygenase [EC:1.13.11.4] D Pden_0168 hypothetical protein K16163 K16163; maleylpyruvate isomerase [EC:5.2.1.4] D Pden_0173 fumarylacetoacetate (FAA) hydrolase K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20] D Pden_3437 fumarylacetoacetate (FAA) hydrolase K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20] C 00360 Phenylalanine metabolism [PATH:pde00360] D Pden_4801 phenylacetate-CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D Pden_4800 phenylacetic acid degradation protein PaaD K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-] D Pden_4810 phenylacetate-CoA oxygenase, PaaG subunit K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] D Pden_4809 phenylacetate-CoA oxygenase, PaaH subunit K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB D Pden_4808 phenylacetate-CoA oxygenase, PaaI subunit K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149] D Pden_4807 phenylacetate-CoA oxygenase, PaaJ subunit K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD D Pden_4806 phenylacetate-CoA oxygenase/reductase, PaaK subunit K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE D Pden_4799 Enoyl-CoA hydratase / short chain enoyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D Pden_3979 Enoyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D Pden_4804 phenylacetic acid degradation protein paaN K02618 paaZ; oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase [EC:3.3.2.12 1.2.1.91] D Pden_0197 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Pden_2552 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Pden_5086 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Pden_0938 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_3420 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_0630 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Pden_0652 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pden_1409 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pden_1664 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Pden_0183 D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D Pden_0804 D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D Pden_0798 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Pden_3425 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Pden_2497 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D Pden_3053 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Pden_2324 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D Pden_3463 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] C 00380 Tryptophan metabolism [PATH:pde00380] D Pden_2620 Kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3] D Pden_1603 Dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Pden_0554 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Pden_0611 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_0551 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_4760 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_4412 acyl-CoA dehydrogenase domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Pden_2871 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pden_2663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2870 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2907 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2026 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_4819 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_3898 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_2755 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_1254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_4971 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3260 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3228 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3211 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3053 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Pden_3059 Amidase K21801 iaaH; indoleacetamide hydrolase [EC:3.5.1.-] D Pden_4611 Catalase K03781 katE; catalase [EC:1.11.1.6] D Pden_2497 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pde00400] D Pden_4791 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Pden_3934 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Pden_1283 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D Pden_0045 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D Pden_2813 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D Pden_1282 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Pden_2226 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D Pden_4332 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D Pden_2132 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Pden_2136 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Pden_2137 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D Pden_3789 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D Pden_2139 indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D Pden_0333 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Pden_3791 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Pden_3880 chorismate mutase K04092 tyrA1; chorismate mutase [EC:5.4.99.5] D Pden_1408 prephenate dehydrogenase K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12] D Pden_1809 prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D Pden_0938 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_3420 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_0630 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Pden_0652 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pden_1409 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:pde00410] D Pden_2338 4-aminobutyrate aminotransferase apoenzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D Pden_3898 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_2755 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_1254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_4971 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3260 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3228 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3211 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_1658 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Pden_1112 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Pden_4616 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Pden_3434 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Pden_3515 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Pden_1113 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Pden_4267 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Pden_2871 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pden_2906 acyl-CoA dehydrogenase domain protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Pden_1720 Malonyl-CoA decarboxylase K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9] D Pden_4479 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:pde00430] D Pden_0660 gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Pden_4273 aminotransferase K03851 tpa; taurine-pyruvate aminotransferase [EC:2.6.1.77] D Pden_1729 L-alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Pden_1644 protein of unknown function DUF1486 K07255 tauX; taurine dehydrogenase small subunit [EC:1.4.2.-] D Pden_1643 FAD dependent oxidoreductase K07256 tauY; taurine dehydrogenase large subunit [EC:1.4.2.-] D Pden_1642 sulfoacetaldehyde acetyltransferase K03852 xsc; sulfoacetaldehyde acetyltransferase [EC:2.3.3.15] D Pden_4277 sulfoacetaldehyde acetyltransferase K03852 xsc; sulfoacetaldehyde acetyltransferase [EC:2.3.3.15] D Pden_1010 sulfoacetaldehyde acetyltransferase K03852 xsc; sulfoacetaldehyde acetyltransferase [EC:2.3.3.15] D Pden_1008 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_1640 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_4275 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_4209 Phosphate butyryltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D Pden_4208 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Pden_1012 AMP-dependent synthetase and ligase K26005 sauT; sulfoacetate-CoA ligase [EC:6.2.1.-] D Pden_1013 Succinate-semialdehyde dehydrogenase (NAD(P)(+)) K15515 sauS; sulfoacetaldehyde dehydrogenase [EC:1.2.1.81] C 00440 Phosphonate and phosphinate metabolism [PATH:pde00440] D Pden_4780 phosphonate metabolism K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37] D Pden_4782 phosphonate metabolism PhnG K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37] D Pden_4781 phosphonate metabolism K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37] D Pden_4777 phosphonate C-P lyase system protein PhnL K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37] D Pden_4774 phosphonate metabolism protein PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] D Pden_4421 phosphonate metabolism protein PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] D Pden_4779 phosphonate metabolism PhnJ K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1] D Pden_2147 beta-lactamase domain protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:pde00450] D Pden_5069 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Pden_0648 aminotransferase, class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Pden_1935 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Pden_3952 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Pden_1355 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Pden_3970 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D Pden_2208 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Pden_4396 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D Pden_4395 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Pden_2723 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Pden_0301 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D Pden_2045 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:pde00460] D Pden_0660 gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Pden_1153 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Pden_4244 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Pden_0920 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pden_3569 Formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] C 00470 D-Amino acid metabolism [PATH:pde00470] D Pden_3689 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Pden_0798 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Pden_3425 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Pden_2406 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Pden_1204 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Pden_4490 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Pden_2962 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Pden_3973 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Pden_0589 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Pden_0395 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Pden_2020 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Pden_1290 Orn/DAP/Arg decarboxylase 2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Pden_1045 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4] D Pden_4859 proline racemase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8] D Pden_3467 proline racemase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8] D Pden_4867 Dihydrodipicolinate synthase K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22] D Pden_4865 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Pden_4665 2,5-dioxopentanoate dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Pden_3264 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Pden_0183 D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D Pden_0804 D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:pde00480] D Pden_0660 gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Pden_1406 ChaC family protein K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7] D Pden_1612 ChaC family protein K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7] D Pden_0277 ChaC family protein K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7] D Pden_3426 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D Pden_0320 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D Pden_1633 uncharacterized enzyme K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-] D Pden_2845 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D Pden_3960 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Pden_2707 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Pden_0903 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Pden_4634 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Pden_4053 alanyl aminopeptidase, Metallo peptidase, MEROPS family M01 K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Pden_3618 Glutathione S-transferase, C-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_0332 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_0407 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_2579 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_2289 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_1834 Glutathione S-transferase, C-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_2769 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_2869 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_3640 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_2330 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_3669 NADPH-glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D Pden_2961 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Pden_2393 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Pden_1952 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Pden_2325 thiol peroxidase (atypical 2-Cys peroxiredoxin) K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27] D Pden_2321 Orn/DAP/Arg decarboxylase 2 K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:pde00540] D Pden_3907 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Pden_4486 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Pden_1241 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Pden_3908 protein of unknown function DUF1009 K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Pden_3909 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Pden_2094 lipid-A-disaccharide kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Pden_2608 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Pden_1233 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Pden_2299 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Pden_2571 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Pden_2093 3-deoxy-D-manno-octulosonic-acid transferase-like protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Pden_1273 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:pde00541] D Pden_2297 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Pden_2296 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pden_3553 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pden_5023 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Pden_5043 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D Pden_2119 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Pden_2121 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Pden_2122 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Pden_2120 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Pden_1296 DegT/DnrJ/EryC1/StrS aminotransferase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1] D Pden_4038 mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP) K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Pden_4824 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8] D Pden_1298 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Pden_1297 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Pden_0618 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Pden_0093 polysaccharide biosynthesis protein CapD K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D Pden_3558 polysaccharide biosynthesis protein CapD K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D Pden_0087 acylneuraminate cytidylyltransferase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81] D Pden_3550 acylneuraminate cytidylyltransferase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81] C 00550 Peptidoglycan biosynthesis [PATH:pde00550] D Pden_1961 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Pden_4491 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Pden_4494 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Pden_0589 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Pden_0586 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Pden_2406 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Pden_1204 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Pden_4490 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Pden_0587 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Pden_3995 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Pden_0491 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Pden_0588 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Pden_4495 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Pden_2288 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Pden_1816 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Pden_0637 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D Pden_4035 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Pden_0585 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Pden_2143 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Pden_1319 peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Pden_1578 peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:pde00552] D Pden_0491 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:pde00543] D Pden_2885 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Pden_5016 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Pden_1293 serine acetyltransferase CysE, putative K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:pde00730] D Pden_2944 hydroxymethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D Pden_0042 hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D Pden_3963 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Pden_0041 glycine oxidase K03153 thiO; glycine oxidase [EC:1.4.3.19] D Pden_0400 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Pden_0039 thiazole-phosphate synthase K03149 thiG; thiazole synthase [EC:2.8.1.10] D Pden_3697 thiamine monophosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D Pden_0038 thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D Pden_0605 thiamine diphosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D Pden_0781 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Pden_0035 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D Pden_3673 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] C 00740 Riboflavin metabolism [PATH:pde00740] D Pden_2375 3,4-dihydroxy-2-butanone 4-phosphate synthase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Pden_1555 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Pden_0204 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Pden_1561 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Pden_1554 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Pden_4679 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Pden_1557 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Pden_3662 FMN adenylyltransferase / riboflavin kinase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D Pden_4654 HAD superfamily (subfamily IIIB) phosphatase, TIGR01672 K03788 aphA; acid phosphatase (class B) [EC:3.1.3.2] D Pden_5119 NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D Pden_2527 cob(II)yrinic acid a,c-diamide reductase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79] D Pden_4938 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Pden_4225 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:pde00750] D Pden_0858 Pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D Pden_4662 Pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D Pden_1437 Pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D Pden_4457 Pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D Pden_0813 phosphoserine aminotransferase apoenzyme K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Pden_0898 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D Pden_0422 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D Pden_4315 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:pde00760] D Pden_4431 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Pden_1041 aspartate dehydrogenase K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21] D Pden_4432 quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72] D Pden_4430 nicotinate-nucleotide pyrophosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D Pden_0852 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D Pden_0524 purine nucleotide phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D Pden_2882 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Pden_2731 3'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Pden_1318 nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D Pden_1579 nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D Pden_1418 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Pden_0853 NH(3)-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D Pden_3665 CinA domain protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D Pden_0851 Nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D Pden_4420 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D Pden_0921 NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D Pden_4048 NAD(P) transhydrogenase, alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D Pden_4047 NAD(P) transhydrogenase, beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D Pden_4354 N-carbamoylsarcosine amidase K13995 nicF; maleamate amidohydrolase [EC:3.5.1.107] D Pden_0284 Asp/Glu racemase K01799 nicE; maleate isomerase [EC:5.2.1.1] D Pden_4618 Asp/Glu racemase K01799 nicE; maleate isomerase [EC:5.2.1.1] D Pden_0223 Succinate-semialdehyde dehydrogenase (NAD(P)(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_0243 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_2257 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_4969 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Pden_4416 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:pde00770] D Pden_3275 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_0633 thiamine pyrophosphate enzyme TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_4942 thiamine pyrophosphate enzyme domain protein TPP-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_4594 thiamine pyrophosphate enzyme domain protein TPP-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_2169 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_1092 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Pden_2170 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Pden_1760 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Pden_2933 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Pden_1984 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Pden_1657 ketopantoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D Pden_4530 ketopantoate reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D Pden_1658 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Pden_2229 pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D Pden_3962 Phosphopantothenoylcysteine decarboxylase / Phosphopantothenate-cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D Pden_1418 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Pden_4476 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D Pden_2814 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D Pden_0421 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D Pden_2602 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Pden_1464 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Pden_1112 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Pden_4616 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Pden_3434 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Pden_3515 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Pden_1113 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Pden_4267 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D Pden_3898 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_2755 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_1254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_4971 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3260 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3228 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3211 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:pde00780] D Pden_2921 Methyltransferase type 11 K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D Pden_1650 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Pden_2438 3-oxoacyl-(acyl carrier protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Pden_2904 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Pden_2349 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_1769 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_3419 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_1255 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_3541 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_5053 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_3906 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Pden_0857 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Pden_1651 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Pden_2920 protein of unknown function DUF452 K09789 bioG; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D Pden_2917 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Pden_2919 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Pden_2918 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D Pden_2916 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D Pden_1433 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D Pden_2230 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Pden_4593 molybdopterin guanine dinucleotide-containing S/N-oxide reductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-] C 00785 Lipoic acid metabolism [PATH:pde00785] D Pden_1936 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D Pden_1376 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D Pden_0611 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_0551 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_4760 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_3892 Pyruvate dehydrogenase (acetyl-transferring) K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D Pden_3891 Transketolase, central region K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D Pden_4983 alpha/beta hydrolase fold protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Pden_3890 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Pden_0555 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D Pden_1603 Dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Pden_0554 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Pden_4757 branched-chain alpha-keto acid dehydrogenase E1 component K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D Pden_4758 branched-chain alpha-keto acid dehydrogenase E1 component K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D Pden_1604 Transketolase, central region K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D Pden_3049 Transketolase, central region K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D Pden_4759 branched-chain alpha-keto acid dehydrogenase E2 component K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D Pden_2346 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Pden_2348 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pden_2347 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:pde00790] D Pden_4297 GTP cyclohydrolase I K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16] D Pden_0543 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D Pden_1402 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Pden_0544 Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D Pden_1988 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D Pden_2375 3,4-dihydroxy-2-butanone 4-phosphate synthase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Pden_1555 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Pden_0204 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Pden_4435 aminodeoxychorismate synthase, subunit I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D Pden_4434 putative aminotransferase, class IV K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D Pden_4184 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Pden_1985 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Pden_4183 preQ(0) biosynthesis protein QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Pden_4185 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Pden_4182 GTP cyclohydrolase I K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Pden_2254 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Pden_2140 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Pden_2340 molybdopterin synthase subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Pden_0501 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D Pden_2141 molybdopterin molybdochelatase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Pden_3400 molybdenum cofactor synthesis domain K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Pden_0032 molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:pde00670] D Pden_1317 Formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D Pden_1580 Formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D Pden_4905 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Pden_2614 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Pden_0920 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pden_3927 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Pden_2718 IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Pden_2348 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Pden_1935 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Pden_3952 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Pden_0934 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D Pden_2613 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Pden_4904 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Pden_2319 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Pden_1385 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] D Pden_1873 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Pden_2682 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Pden_1940 FAD dependent oxidoreductase K00315 DMGDH; dimethylglycine dehydrogenase [EC:1.5.8.4] D Pden_2346 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Pden_0611 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_0551 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_4760 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_2347 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Pden_1044 glucose-methanol-choline oxidoreductase K00108 betA; choline dehydrogenase [EC:1.1.99.1] D Pden_1896 choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1] D Pden_1897 betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:pde00860] D Pden_1822 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D Pden_3717 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pden_0884 glutamate--tRNA(Gln) ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pden_3809 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Pden_3630 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D Pden_1997 putative uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D Pden_3629 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D Pden_1752 Coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D Pden_1851 oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D Pden_0001 conserved hypothetical protein 701 K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D Pden_2583 Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D Pden_2556 uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D Pden_2488 uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D Pden_2492 transcriptional regulator, AsnC family K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111] D Pden_2493 transcriptional regulator, AsnC family K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111] D Pden_2491 transcriptional regulator, AsnC family K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111] D Pden_2495 cytochrome d1, heme region K24867 nirN; dihydro-heme d1 dehydrogenase D Pden_4320 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Pden_3699 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Pden_2535 precorrin-2 C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D Pden_2533 precorrin-3B synthase K02229 cobG; precorrin-3B synthase [EC:1.14.13.83] D Pden_2536 precorrin-3 methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272] D Pden_2540 precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D Pden_2539 precorrin methylase K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12] D Pden_2542 precorrin-6A synthase (deacetylating) K02228 cobF; precorrin-6A synthase [EC:2.1.1.152] D Pden_2537 precorrin-6A reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D Pden_2538 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196] D Pden_2534 precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D Pden_2541 cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D Pden_2532 cobaltochelatase CobN subunit K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2] D Pden_2189 cobaltochelatase CobS subunit K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2] D Pden_2191 cobaltochelatase CobT subunit K09883 cobT; cobaltochelatase CobT [EC:6.6.1.2] D Pden_2549 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Pden_2529 cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Pden_3713 adenosylcobyric acid synthase (glutamine-hydrolysing) K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D Pden_3631 adenosylcobinamide-phosphate synthase K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D Pden_2200 aminotransferase K02225 cobC1; cobalamin biosynthesis protein CobC D Pden_1568 adenosylcobinamide kinase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D Pden_1566 cobalamin-5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D Pden_1567 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D Pden_3632 Phosphoglycerate mutase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D Pden_1323 pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58] D Pden_1574 pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58] D Pden_0616 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:pde00130] D Pden_5092 thioesterase superfamily protein K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23] D Pden_0625 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Pden_4226 3-octaprenyl-4hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D Pden_4938 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Pden_4225 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Pden_2589 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D Pden_3942 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D Pden_2670 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octaprenyl-6-methoxyphenol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D Pden_4511 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D Pden_2382 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2] D Pden_4564 flavoprotein WrbA K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D Pden_4294 NmrA family protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D Pden_1664 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:pde00900] D Pden_0400 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Pden_3997 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D Pden_3667 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] D Pden_0423 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D Pden_1820 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D Pden_3619 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D Pden_2663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2870 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2907 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2026 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_4819 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_4938 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Pden_4225 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Pden_0399 farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D Pden_2031 Trans-hexaprenyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Pden_3995 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation D Pden_3898 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_2755 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_1254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_4971 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3260 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3228 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3211 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00907 Pinene, camphor and geraniol degradation [PATH:pde00907] D Pden_2871 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pden_3641 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Pden_4878 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Pden_3226 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D Pden_1275 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Pden_1697 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:pde00523] D Pden_2119 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Pden_2121 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Pden_2122 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Pden_2120 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:pde01053] D Pden_2382 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2] D Pden_2383 Isochorismatase K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14] D Pden_2384 short-chain dehydrogenase/reductase SDR K00216 entA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [EC:1.3.1.28] D Pden_2386 2,3-dihydroxybenzoate-AMP ligase K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71] D Pden_2387 condensation domain protein K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72] D Pden_2564 amino acid adenylation domain K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72] D Pden_3009 chorismate mutase related enzyme K04782 pchB; isochorismate pyruvate lyase [EC:4.2.99.21] D Pden_0691 chorismate mutase K04782 pchB; isochorismate pyruvate lyase [EC:4.2.99.21] D Pden_3008 AMP-dependent synthetase and ligase K12238 pchD; salicylate---[aryl-carrier protein] ligase [EC:6.2.1.61] C 01055 Biosynthesis of vancomycin group antibiotics [PATH:pde01055] D Pden_4676 FMN-dependent alpha-hydroxy acid dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46] D Pden_2121 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D Pden_4813 Penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] D Pden_4002 Penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] C 00332 Carbapenem biosynthesis [PATH:pde00332] D Pden_4055 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Pden_4503 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:pde00261] D Pden_4676 FMN-dependent alpha-hydroxy acid dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46] D Pden_4396 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D Pden_4395 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Pden_0862 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Pden_2775 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Pden_0704 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Pden_4876 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Pden_4753 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Pden_3424 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Pden_2798 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:pde00521] D Pden_2680 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Pden_4423 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Pden_0707 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Pden_4652 Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Pden_2688 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Pden_1678 myo-inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D Pden_2119 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Pden_2121 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Pden_2122 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Pden_2120 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D Pden_2680 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:pde00525] D Pden_2119 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Pden_2121 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:pde00401] D Pden_1408 prephenate dehydrogenase K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12] D Pden_0938 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_3420 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_0630 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Pden_0652 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pden_1409 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D Pden_2132 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Pden_2136 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D Pden_1770 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Pden_2349 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_1769 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_3419 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_1255 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_3541 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_5053 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_0857 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Pden_1651 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D Pden_1242 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein D Pden_1768 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:pde00999] D Pden_1873 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Pden_2813 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:pde00362] D Pden_1177 benzoate 1,2-dioxygenase, alpha subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D Pden_1178 2-chlorobenzoate 1,2-dioxygenase K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D Pden_1179 oxidoreductase FAD/NAD(P)-binding domain protein K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D Pden_1180 short-chain dehydrogenase/reductase SDR K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D Pden_1176 catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D Pden_1174 muconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D Pden_1175 muconolactone delta-isomerase K03464 catC; muconolactone D-isomerase [EC:5.3.3.4] D Pden_3491 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D Pden_1182 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D Pden_5020 3-oxoacid CoA-transferase, A subunit K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6] D Pden_5021 3-oxoadipate CoA-transferase beta subunit K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6] D Pden_3226 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Pden_4811 beta-ketoadipyl CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174] D Pden_5022 3-oxoadipyl-CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174] D Pden_3495 protein of unknown function DUF849 K27848 E2.3.1.318; 3-oxoadipate:acetyl-CoA acetyltransferase [EC:2.3.1.318] D Pden_2379 Glyoxalase/bleomycin resistance protein/dioxygenase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D Pden_0208 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D Pden_3494 protocatechuate 3,4-dioxygenase, alpha subunit K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D Pden_3493 protocatechuate 3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] D Pden_3496 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2] D Pden_3215 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Pden_3492 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Pden_2236 Carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Pden_2237 Carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Pden_3257 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Pden_3269 hypothetical protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Pden_3274 4-oxalomesaconate hydratase K10220 ligJ; 4-oxalmesaconate hydratase [EC:4.2.1.83] D Pden_2324 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D Pden_3463 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D Pden_4027 ferredoxin K04755 fdx; ferredoxin, 2Fe-2S D Pden_3464 ferredoxin K04755 fdx; ferredoxin, 2Fe-2S D Pden_3490 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2] D Pden_5092 thioesterase superfamily protein K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23] D Pden_2871 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Pden_3225 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Pden_4792 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Pden_0201 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Pden_4412 acyl-CoA dehydrogenase domain protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D Pden_0197 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Pden_2552 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Pden_5086 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Pden_2663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2870 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2907 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2026 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_4819 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:pde00627] D Pden_3053 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Pden_3488 monooxygenase, FAD-binding protein K03380 E1.14.13.7; phenol 2-monooxygenase (NADPH) [EC:1.14.13.7] D Pden_4938 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Pden_4225 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Pden_5094 AMP-dependent synthetase and ligase K08295 abmG; 2-aminobenzoate-CoA ligase [EC:6.2.1.32] D Pden_5087 NADH:flavin oxidoreductase/NADH oxidase K09461 E1.14.13.40; anthraniloyl-CoA monooxygenase [EC:1.14.13.40] C 00364 Fluorobenzoate degradation [PATH:pde00364] D Pden_1177 benzoate 1,2-dioxygenase, alpha subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D Pden_1178 2-chlorobenzoate 1,2-dioxygenase K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D Pden_1179 oxidoreductase FAD/NAD(P)-binding domain protein K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D Pden_1180 short-chain dehydrogenase/reductase SDR K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D Pden_1176 catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D Pden_0735 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D Pden_1174 muconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] C 00625 Chloroalkane and chloroalkene degradation [PATH:pde00625] D Pden_4206 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pden_2367 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pden_0016 Alcohol dehydrogenase GroES domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Pden_3898 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_2755 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_1254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_4971 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3260 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3228 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_3211 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Pden_1186 glutathione-independent formaldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D Pden_2993 Pyrrolo-quinoline quinone K14028 mdh1; methanol dehydrogenase (cytochrome c) subunit 1 [EC:1.1.2.7] D Pden_2996 methanol dehydrogenase, beta subunit K14029 mdh2; methanol dehydrogenase (cytochrome c) subunit 2 [EC:1.1.2.7] D Pden_0043 HAD-superfamily hydrolase, subfamily IA, variant 3 K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D Pden_4968 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:pde00361] D Pden_1176 catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D Pden_0735 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D Pden_1174 muconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D Pden_2379 Glyoxalase/bleomycin resistance protein/dioxygenase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D Pden_0043 HAD-superfamily hydrolase, subfamily IA, variant 3 K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D Pden_4968 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00623 Toluene degradation [PATH:pde00623] D Pden_3488 monooxygenase, FAD-binding protein K03380 E1.14.13.7; phenol 2-monooxygenase (NADPH) [EC:1.14.13.7] D Pden_1176 catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D Pden_1174 muconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D Pden_0735 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation [PATH:pde00622] D Pden_1177 benzoate 1,2-dioxygenase, alpha subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D Pden_1178 2-chlorobenzoate 1,2-dioxygenase K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D Pden_1179 oxidoreductase FAD/NAD(P)-binding domain protein K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D Pden_1180 short-chain dehydrogenase/reductase SDR K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D Pden_2379 Glyoxalase/bleomycin resistance protein/dioxygenase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D Pden_0208 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00633 Nitrotoluene degradation D Pden_3098 nickel-dependent hydrogenase, large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6] D Pden_3097 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6] D Pden_3095 nickel-dependent hydrogenase, large subunit K23549 hupV; uptake hydrogenase large subunit [EC:1.12.99.6] D Pden_3094 NADH ubiquinone oxidoreductase, 20 kDa subunit K23548 hupU; uptake hydrogenase small subunit [EC:1.12.99.6] C 00642 Ethylbenzene degradation D Pden_3226 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:pde00643] D Pden_3547 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D Pden_0913 Homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D Pden_3549 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D Pden_0174 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D Pden_3548 fumarylacetoacetate hydrolase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D Pden_3053 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Pden_2379 Glyoxalase/bleomycin resistance protein/dioxygenase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2] D Pden_4600 putative glutaconate CoA-transferase, subunit A K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D Pden_4599 putative CoA transferase, subunit B K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] C 00791 Atrazine degradation D Pden_1208 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D Pden_1209 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D Pden_1211 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00930 Caprolactam degradation [PATH:pde00930] D Pden_2098 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D Pden_0198 Butyryl-CoA dehydrogenase K06446 DCAA; acyl-CoA dehydrogenase [EC:1.3.99.-] D Pden_2871 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation C 00621 Dioxin degradation D Pden_0208 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00626 Naphthalene degradation [PATH:pde00626] D Pden_4206 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pden_2367 Alcohol dehydrogenase GroES domain protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Pden_0016 Alcohol dehydrogenase GroES domain protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation D Pden_3494 protocatechuate 3,4-dioxygenase, alpha subunit K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D Pden_3493 protocatechuate 3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:pde03020] D Pden_0747 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Pden_0749 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Pden_0784 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Pden_1401 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:pde03010] D Pden_3786 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1 D Pden_3726 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2 D Pden_0765 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3 D Pden_4303 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D Pden_0776 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5 D Pden_0891 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6 D Pden_0754 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7 D Pden_0773 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8 D Pden_2970 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D Pden_0758 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10 D Pden_0783 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D Pden_0753 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12 D Pden_0782 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D Pden_0772 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14 D Pden_2760 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15 D Pden_3881 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16 D Pden_0768 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D Pden_0890 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18 D Pden_0763 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19 D Pden_4514 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20 D Pden_2267 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21 D Pden_0744 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1 D Pden_0762 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D Pden_0759 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3 D Pden_0760 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4 D Pden_0771 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D Pden_0774 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D Pden_0746 LSU ribosomal protein L12P / LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12 D Pden_0889 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9 D Pden_0745 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10 D Pden_0743 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D Pden_2969 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D Pden_0769 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D Pden_0779 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D Pden_0766 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16 D Pden_0785 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17 D Pden_0775 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D Pden_3884 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19 D Pden_2273 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20 D Pden_4103 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21 D Pden_0764 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22 D Pden_0761 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23 D Pden_0770 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24 D Pden_4077 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25 D Pden_4102 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27 D Pden_2433 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28 D Pden_0767 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29 D Pden_0777 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D Pden_3885 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31 D Pden_1859 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32 D Pden_4292 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33 D Pden_0872 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34 D Pden_2274 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35 D Pden_0055 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36 D Pden_R0002 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pden_R0043 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pden_R0005 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pden_R0040 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pden_R0006 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pden_R0039 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:pde00970] D Pden_R0024 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pden_R0004 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pden_R0041 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pden_R0048 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pden_R0015 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pden_R0030 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pden_R0044 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pden_R0026 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Pden_R0018 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Pden_R0034 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Pden_R0035 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Pden_R0050 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Pden_R0019 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Pden_R0027 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pden_R0033 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pden_R0012 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pden_R0028 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pden_R0049 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pden_R0022 tRNA-His K14226 tRNA-His; tRNA His D Pden_R0003 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Pden_R0042 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Pden_R0021 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pden_R0011 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pden_R0046 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pden_R0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pden_R0009 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Pden_R0016 tRNA-Met K14230 tRNA-Met; tRNA Met D Pden_R0007 tRNA-Met K14230 tRNA-Met; tRNA Met D Pden_R0038 tRNA-Met K14230 tRNA-Met; tRNA Met D Pden_R0047 tRNA-Met K14230 tRNA-Met; tRNA Met D Pden_R0029 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Pden_R0010 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Pden_R0032 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Pden_R0014 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Pden_R0008 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pden_R0020 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pden_R0023 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pden_R0017 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pden_R0037 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Pden_R0045 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Pden_R0013 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Pden_R0001 tRNA-Val K14237 tRNA-Val; tRNA Val D Pden_R0051 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D Pden_3717 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pden_0884 glutamate--tRNA(Gln) ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pden_5054 Amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Pden_2671 Amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Pden_0576 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Pden_1929 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Pden_0575 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Pden_0598 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Pden_2183 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Pden_0538 glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Pden_0540 glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Pden_0955 Ser-tRNA(Thr) hydrolase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Pden_2429 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Pden_0301 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D Pden_4063 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Pden_2045 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Pden_0642 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Pden_2331 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Pden_2765 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Pden_3612 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Pden_1576 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D Pden_1321 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D Pden_1870 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Pden_1299 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Pden_1925 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Pden_2270 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Pden_2262 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Pden_1913 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Pden_3953 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes D Pden_0419 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:pde03060] D Pden_0780 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Pden_0741 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Pden_3712 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Pden_1416 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Pden_1415 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D Pden_1417 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Pden_0877 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Pden_2599 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Pden_2784 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Pden_3878 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Pden_R0031 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Pden_1921 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Pden_0907 sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA D Pden_0908 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Pden_0909 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC D Pden_0420 signal peptidase I, Serine peptidase, MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89] D Pden_2717 signal peptidase II, Aspartic peptidase, MEROPS family A08 K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum D Pden_3146 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:pde04122] D Pden_3963 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Pden_0631 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Pden_2558 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Pden_4098 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Pden_2340 molybdopterin synthase subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Pden_2254 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Pden_2341 molybdopterin synthase subunit MoaD K03636 moaD; sulfur-carrier protein D Pden_4197 UBA/THIF-type NAD/FAD binding protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D Pden_2140 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Pden_0501 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D Pden_0040 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome C 03018 RNA degradation [PATH:pde03018] D Pden_2509 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D Pden_2965 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12] D Pden_4060 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Pden_2759 3' exoribonuclease K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Pden_1743 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Pden_2853 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Pden_4366 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Pden_2656 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Pden_0002 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Pden_2228 beta-lactamase domain protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D Pden_2302 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Pden_3654 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Pden_4585 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Pden_4124 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Pden_1302 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Pden_1594 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Pden_3709 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Pden_1835 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Pden_4500 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Pden_2575 Polynucleotide adenylyltransferase region K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:pde03030] D Pden_5114 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_2815 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_4556 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_0449 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_1762 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Pden_3649 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Pden_2145 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Pden_2767 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Pden_0904 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Pden_2834 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pden_0970 DNA polymerase III beta subunit family protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pden_0342 DNA polymerase III beta subunit family protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pden_4469 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Pden_4073 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Pden_3806 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_3361 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_3167 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_0123 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_3617 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Pden_2102 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Pden_1853 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Pden_4083 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:pde03410] D Pden_2873 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Pden_2138 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Pden_2097 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Pden_4512 DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Pden_3945 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Pden_2024 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Pden_4607 Uracil-DNA glycosylase superfamily K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Pden_0438 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Pden_0929 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Pden_2372 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Pden_1853 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Pden_1877 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Pden_4083 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:pde03420] D Pden_3811 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Pden_2252 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D Pden_1308 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D Pden_1588 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D Pden_2312 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D Pden_4295 ATP-dependent DNA helicase, Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Pden_1438 pathogenesis-related protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Pden_1853 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Pden_4083 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:pde03430] D Pden_0827 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Pden_2713 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Pden_4295 ATP-dependent DNA helicase, Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Pden_1438 pathogenesis-related protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Pden_4028 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Pden_0398 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Pden_1877 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Pden_3806 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_3361 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_3167 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_0123 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_1762 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Pden_2834 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pden_0970 DNA polymerase III beta subunit family protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pden_0342 DNA polymerase III beta subunit family protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pden_3649 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Pden_2767 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Pden_2145 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Pden_5114 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_2815 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_4556 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_0449 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_0904 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Pden_4083 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Pden_0261 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:pde03440] D Pden_1877 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Pden_3806 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_3361 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_3167 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_0123 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_2835 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Pden_2837 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Pden_3647 recombination protein RecR K06187 recR; recombination protein RecR D Pden_0597 recA protein K03553 recA; recombination protein RecA D Pden_1853 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Pden_0695 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Pden_0693 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Pden_0696 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Pden_4082 DEAD/DEAH box helicase domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Pden_1762 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Pden_2834 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pden_0970 DNA polymerase III beta subunit family protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pden_0342 DNA polymerase III beta subunit family protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pden_3649 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Pden_2767 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Pden_2145 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Pden_5114 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_2815 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_4556 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_0449 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_0904 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Pden_2498 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining D Pden_4186 conserved hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus and Alphavirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03273 Virion - Lassa virus and SFTS virus C 03272 Virion - Hepatitis viruses C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:pde02010] D Pden_1798 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D Pden_4344 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D Pden_4343 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Pden_1799 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Pden_4342 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Pden_1800 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Pden_1797 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Pden_4341 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Pden_5006 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pden_4109 putative sulfonate/nitrate transport system substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pden_5012 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pden_4881 Substrate-binding region of ABC-type glycine betaine transport system K15553 ssuA; sulfonate transport system substrate-binding protein D Pden_5005 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pden_4108 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pden_4882 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pden_5011 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pden_5004 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pden_4107 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pden_5010 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pden_4883 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pden_0036 NlpA lipoprotein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein D Pden_0033 binding-protein-dependent transport systems inner membrane component K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein D Pden_0034 ABC transporter related protein K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein D Pden_2665 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Pden_1167 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Pden_2666 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Pden_2667 molybdate ABC transporter, ATPase subunit K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Pden_4911 extracellular solute-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D Pden_1078 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Pden_4649 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Pden_4447 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Pden_4658 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Pden_0309 periplasmic iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D Pden_4912 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Pden_4650 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Pden_4659 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Pden_4446 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Pden_1079 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Pden_4913 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Pden_4651 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Pden_4660 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Pden_4448 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Pden_1077 carbohydrate ABC transporter ATP-binding protein, CUT1 family K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Pden_4502 ABC polyamine transporter, periplasmic substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D Pden_1021 spermidine/putrescine ABC transporter, periplasmic binding protein, putative K11069 potD; spermidine/putrescine transport system substrate-binding protein D Pden_4067 binding-protein-dependent transport systems inner membrane component K11070 potC; spermidine/putrescine transport system permease protein D Pden_1023 binding-protein-dependent transport systems inner membrane component K11070 potC; spermidine/putrescine transport system permease protein D Pden_4068 binding-protein-dependent transport systems inner membrane component K11071 potB; spermidine/putrescine transport system permease protein D Pden_1022 binding-protein-dependent transport systems inner membrane component K11071 potB; spermidine/putrescine transport system permease protein D Pden_1024 ABC transporter related protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D Pden_4066 ABC transporter related protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D Pden_3856 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pden_4749 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pden_1195 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pden_0945 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pden_2285 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pden_1899 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pden_3857 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Pden_4746 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Pden_4747 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Pden_1194 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Pden_0946 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Pden_1900 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Pden_3858 ABC transporter related protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Pden_4748 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Pden_1901 ABC transporter related protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Pden_1193 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Pden_0947 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Pden_4888 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein D Pden_4885 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein D Pden_4887 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein D Pden_4886 glycine betaine/L-proline ABC transporter, ATPase subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D Pden_4178 mannitol ABC transporter ATP-binding protein / sorbitol ABC transporter ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pden_4439 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pden_2469 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pden_4842 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pden_1087 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pden_3407 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pden_1050 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pden_2472 carbohydrate ABC transporter substrate-binding protein, CUT1 family K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D Pden_2471 carbohydrate ABC transporter membrane protein 1, CUT1 family K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D Pden_2470 carbohydrate ABC transporter membrane protein 2, CUT1 family K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D Pden_4181 mannitol-binding protein / sorbitol-binding protein K10227 smoE; polyol transport system substrate-binding protein D Pden_4180 mannitol ABC transporter membrane protein / sorbitol ABC transporter membrane protein K10228 smoF; polyol transport system permease protein D Pden_4844 mannitol ABC transporter membrane protein / sorbitol ABC transporter membrane protein K10228 smoF; polyol transport system permease protein D Pden_4179 sorbitol ABC transporter membrane protein / mannitol ABC transporter membrane protein K10229 smoG; polyol transport system permease protein D Pden_4843 sorbitol ABC transporter membrane protein / mannitol ABC transporter membrane protein K10229 smoG; polyol transport system permease protein D Pden_4442 carbohydrate ABC transporter substrate-binding protein, CUT1 family K10236 thuE; trehalose/maltose transport system substrate-binding protein D Pden_4441 carbohydrate ABC transporter membrane protein 1, CUT1 family K10237 thuF; trehalose/maltose transport system permease protein D Pden_4440 carbohydrate ABC transporter membrane protein 2, CUT1 family K10238 thuG; trehalose/maltose transport system permease protein D Pden_2745 multiple monosaccharide-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein D Pden_2747 multiple monosaccharide ABC transporter membrane protein K10547 gguB; putative multiple sugar transport system permease protein D Pden_2746 multiple monosaccharide ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pden_2034 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Pden_1268 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Pden_2315 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Pden_3690 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Pden_2317 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Pden_3691 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Pden_2316 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Pden_0528 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins D Pden_0933 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins D Pden_1766 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins D Pden_0526 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein D Pden_1764 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein D Pden_1765 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein D Pden_0525 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein D Pden_0527 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D Pden_1763 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D Pden_3404 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17315 gtsA; glucose/mannose transport system substrate-binding protein D Pden_1090 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17315 gtsA; glucose/mannose transport system substrate-binding protein D Pden_3405 carbohydrate ABC transporter membrane protein 1, CUT1 family K17316 gtsB; glucose/mannose transport system permease protein D Pden_1089 carbohydrate ABC transporter membrane protein 1, CUT1 family K17316 gtsB; glucose/mannose transport system permease protein D Pden_1088 carbohydrate ABC transporter membrane protein 2, CUT1 family K17317 gtsC; glucose/mannose transport system permease protein D Pden_3406 carbohydrate ABC transporter membrane protein 2, CUT1 family K17317 gtsC; glucose/mannose transport system permease protein D Pden_4771 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pden_2160 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pden_4851 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pden_0247 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pden_4770 monosaccharide ABC transporter membrane protein, CUT2 family K10440 rbsC; ribose transport system permease protein D Pden_2158 monosaccharide ABC transporter membrane protein, CUT2 family K10440 rbsC; ribose transport system permease protein D Pden_4849 monosaccharide ABC transporter membrane protein, CUT2 family K10440 rbsC; ribose transport system permease protein D Pden_0249 monosaccharide ABC transporter membrane protein, CUT2 family K10440 rbsC; ribose transport system permease protein D Pden_4769 monosaccharide ABC transporter ATP-binding protein, CUT2 family K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Pden_2159 monosaccharide ABC transporter ATP-binding protein, CUT2 family K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Pden_4850 monosaccharide ABC transporter ATP-binding protein, CUT2 family K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Pden_0248 monosaccharide ABC transporter ATP-binding protein, CUT2 family K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Pden_1032 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10543 xylF; D-xylose transport system substrate-binding protein D Pden_1034 inner-membrane translocator K10544 xylH; D-xylose transport system permease protein D Pden_1033 monosaccharide ABC transporter ATP-binding protein, CUT2 family K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D Pden_0505 mannose-binding protein / fructose-binding protein / ribose-binding protein K10552 frcB; fructose transport system substrate-binding protein D Pden_0504 fructose ABC transporter membrane protein / mannose ABC transporter membrane protein / ribose ABC transporter membrane protein K10553 frcC; fructose transport system permease protein D Pden_0503 ribose ABC transporter ATP-binding protein / fructose ABC transporter ATP-binding protein / mannose ABC transporter ATP-binding protein K10554 frcA; fructose transport system ATP-binding protein D Pden_1681 monosaccharide ABC transporter substrate-binding protein, CUT2 family K17213 K17213; inositol transport system substrate-binding protein D Pden_1684 monosaccharide ABC transporter substrate-binding protein, CUT2 family K17213 K17213; inositol transport system substrate-binding protein D Pden_1682 monosaccharide ABC transporter membrane protein, CUT2 family K17214 K17214; inositol transport system permease protein D Pden_1683 monosaccharide ABC transporter ATP-binding protein, CUT2 family K17215 K17215; inositol transport system ATP-binding protein D Pden_4387 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17321 glpV; glycerol transport system substrate-binding protein D Pden_4390 carbohydrate ABC transporter membrane protein 1, CUT1 family K17322 glpP; glycerol transport system permease protein D Pden_4389 carbohydrate ABC transporter membrane protein 2, CUT1 family K17323 glpQ; glycerol transport system permease protein D Pden_4392 carbohydrate ABC transporter ATP-binding protein, CUT1 family K17324 glpS; glycerol transport system ATP-binding protein D Pden_4391 carbohydrate ABC transporter ATP-binding protein, CUT1 family K17325 glpT; glycerol transport system ATP-binding protein D Pden_4190 carbohydrate ABC transporter substrate-binding protein, CUT1 family K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D Pden_4189 carbohydrate ABC transporter membrane protein 1, CUT1 family K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D Pden_4188 carbohydrate ABC transporter membrane protein 2, CUT1 family K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D Pden_4187 carbohydrate ABC transporter ATP-binding protein, CUT1 family K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D Pden_4330 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Pden_4329 phosphate ABC transporter membrane protein 1, PhoT family K02037 pstC; phosphate transport system permease protein D Pden_4328 phosphate ABC transporter membrane protein 2, PhoT family K02038 pstA; phosphate transport system permease protein D Pden_4327 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Pden_4786 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D Pden_4784 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D Pden_4785 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D Pden_4787 phosphonate ABC transporter, ATPase subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Pden_1072 L-glutamate-binding protein / L-aspartate-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein D Pden_1074 L-aspartate ABC transporter membrane protein / L-glutamate ABC transporter membrane protein K10002 gltK; glutamate/aspartate transport system permease protein D Pden_1073 L-glutamate ABC transporter membrane protein / L-aspartate ABC transporter membrane protein K10003 gltJ; glutamate/aspartate transport system permease protein D Pden_1075 amino acid ABC transporter ATP-binding protein, PAAT family K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D Pden_0793 L-aspartate-binding protein / L-glutamate-binding protein / L-glutamine-binding protein / L-asparagine-binding protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D Pden_0794 L-asparagine ABC transporter membrane protein / L-glutamine ABC transporter membrane protein / L-glutamate ABC transporter membrane protein / L-aspartate ABC transporter membrane protein K09970 aapQ; general L-amino acid transport system permease protein D Pden_0795 L-glutamate ABC transporter membrane protein / L-asparagine ABC transporter membrane protein / L-glutamine ABC transporter membrane protein / L-aspartate ABC transporter membrane protein K09971 aapM; general L-amino acid transport system permease protein D Pden_0796 L-aspartate ABC transporter ATP-binding protein / L-glutamine ABC transporter ATP-binding protein / L-glutamate ABC transporter ATP-binding protein / L-asparagine ABC transporter ATP-binding protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D Pden_1152 amino acid ABC transporter ATP-binding protein, PAAT family K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D Pden_4864 amino acid ABC transporter substrate-binding protein, PAAT family K23061 lhpP; hydroxyproline transporter system substrate-binding protein D Pden_1025 amino acid ABC transporter substrate-binding protein, PAAT family K23061 lhpP; hydroxyproline transporter system substrate-binding protein D Pden_4863 amino acid ABC transporter membrane protein 1, PAAT family K23062 lhpM; hydroxyproline transport system permease protein D Pden_1026 amino acid ABC transporter membrane protein 1, PAAT family K23062 lhpM; hydroxyproline transport system permease protein D Pden_4862 amino acid ABC transporter membrane protein 2, PAAT family K23063 lhpN; hydroxyproline transport system permease protein D Pden_1027 amino acid ABC transporter membrane protein 2, PAAT family K23063 lhpN; hydroxyproline transport system permease protein D Pden_1028 amino acid ABC transporter ATP-binding protein, PAAT family K23064 lhpO; hydroxyproline transport system ATP-binding protein [EC:7.4.2.1] D Pden_4861 amino acid ABC transporter ATP-binding protein, PAAT family K23064 lhpO; hydroxyproline transport system ATP-binding protein [EC:7.4.2.1] D Pden_3932 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_5095 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_4797 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_0052 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_4272 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_1717 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_4869 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_3574 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_0175 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_3054 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_4994 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_3929 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_5096 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_4796 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_4271 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_1714 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_0050 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_0176 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_3057 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_3575 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_5000 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_3928 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_5097 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_4795 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_0051 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_4270 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_1713 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_0177 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_3058 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_4999 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_3576 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family / amino acid/amide ABC transporter membrane protein 2, HAAT family / amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_3931 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_5098 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_3055 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_4998 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_4794 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_0049 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_4269 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_1716 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_0178 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_3930 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_5099 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_3056 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_4793 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_0053 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_4268 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_1715 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_0179 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_4997 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_4308 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D Pden_4307 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D Pden_4306 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein D Pden_4017 amino acid/amide ABC transporter substrate-binding protein, HAAT family K11959 urtA; urea transport system substrate-binding protein D Pden_4018 amino acid/amide ABC transporter membrane protein 1, HAAT family K11960 urtB; urea transport system permease protein D Pden_4019 amino acid/amide ABC transporter membrane protein 2, HAAT family K11961 urtC; urea transport system permease protein D Pden_4020 ABC transporter related protein K11962 urtD; urea transport system ATP-binding protein D Pden_4021 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K11963 urtE; urea transport system ATP-binding protein D Pden_1569 extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D Pden_1328 extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D Pden_1570 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein D Pden_1327 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein D Pden_1326 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein D Pden_1571 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein D Pden_1572 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein D Pden_1325 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein D Pden_1573 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein D Pden_1324 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein D Pden_1671 extracellular solute-binding protein, family 5 K12368 dppA; dipeptide transport system substrate-binding protein D Pden_1670 binding-protein-dependent transport systems inner membrane component K12369 dppB; dipeptide transport system permease protein D Pden_1669 binding-protein-dependent transport systems inner membrane component K12370 dppC; dipeptide transport system permease protein D Pden_1668 ABC transporter related protein K12371 dppD; dipeptide transport system ATP-binding protein D Pden_1667 ABC transporter related protein K12372 dppF; dipeptide transport system ATP-binding protein D Pden_1807 extracellular solute-binding protein, family 5 K13893 yejA; microcin C transport system substrate-binding protein D Pden_1806 binding-protein-dependent transport systems inner membrane component K13894 yejB; microcin C transport system permease protein D Pden_1805 binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein D Pden_1804 ABC transporter related protein K13896 yejF; microcin C transport system ATP-binding protein D Pden_3531 periplasmic binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D Pden_3522 periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D Pden_3532 transport system permease protein K23186 fepD; iron-siderophore transport system permease protein D Pden_3533 transport system permease protein K23186 fepD; iron-siderophore transport system permease protein D Pden_3523 transport system permease protein K23186 fepD; iron-siderophore transport system permease protein D Pden_3534 transport system permease protein K23187 fepG; iron-siderophore transport system permease protein D Pden_3524 transport system permease protein K23187 fepG; iron-siderophore transport system permease protein D Pden_3525 ABC transporter related protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D Pden_3529 ABC transporter related protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D Pden_1140 periplasmic binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D Pden_1141 transport system permease protein K23228 fhuB; ferric hydroxamate transport system permease protein D Pden_1142 ABC transporter related protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D Pden_4140 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein D Pden_4137 ABC-3 protein K09816 znuB; zinc transport system permease protein D Pden_4138 ABC transporter related protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Pden_1259 periplasmic solute binding protein K11604 sitA; manganese/iron transport system substrate-binding protein D Pden_1257 ABC-3 protein K11605 sitC; manganese/iron transport system permease protein D Pden_1256 ABC-3 protein K11606 sitD; manganese/iron transport system permease protein D Pden_1258 ABC transporter related protein K11607 sitB; manganese/iron transport system ATP-binding protein D Pden_5033 BioY protein K03523 bioY; biotin transport system substrate-specific component D Pden_1432 BioY protein K03523 bioY; biotin transport system substrate-specific component D Pden_5032 cobalt transport protein K16783 bioN; biotin transport system permease protein D Pden_5031 ABC transporter related protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D Pden_1234 capsule polysaccharide export protein-like protein K10107 kpsE; capsular polysaccharide transport system permease protein D Pden_2126 Capsule polysaccharide export protein-like protein K10107 kpsE; capsular polysaccharide transport system permease protein D Pden_5038 capsule polysaccharide export protein-like protein K10107 kpsE; capsular polysaccharide transport system permease protein D Pden_5039 ABC-2 type transporter K09688 kpsM; capsular polysaccharide transport system permease protein D Pden_2125 ABC-2 type transporter K09688 kpsM; capsular polysaccharide transport system permease protein D Pden_5037 ABC transporter related protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D Pden_1235 ABC transporter related protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D Pden_2127 ABC transporter related protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D Pden_1840 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E_F; lipoprotein-releasing system permease protein D Pden_1839 ABC transporter related protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Pden_1411 heme exporter protein CcmC K02195 ccmC; heme exporter protein C D Pden_1412 heme exporter protein CcmB K02194 ccmB; heme exporter protein B D Pden_1413 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D Pden_0902 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Pden_0901 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Pden_2605 ABC transporter related protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Pden_4216 nitrous oxide maturation protein NosY K19341 nosY; Cu-processing system permease protein D Pden_4217 ABC transporter related protein K19340 nosF; Cu-processing system ATP-binding protein D Pden_2016 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Pden_2017 ABC transporter related protein K09812 ftsE; cell division transport system ATP-binding protein D Pden_1493 ABC transporter related protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D Pden_3017 ABC transporter related protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D Pden_1492 ABC transporter related protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D Pden_3018 ABC transporter related protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D Pden_0730 ABC transporter related protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Pden_4346 colicin V processing peptidase, Cysteine peptidase, MEROPS family C39 K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D Pden_0739 ABC transporter related protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D Pden_2413 ABC transporter related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Pden_2036 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D Pden_4336 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D Pden_5133 ABC transporter related protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D Pden_2937 ABC transporter related protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D Pden_3444 ABC transporter related protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] C 02060 Phosphotransferase system (PTS) [PATH:pde02060] D Pden_2848 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D Pden_2849 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Pden_0863 PTSINtr with GAF domain, PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D Pden_2603 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:pde03070] D Pden_2727 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pden_1416 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Pden_1415 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D Pden_0741 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Pden_3712 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Pden_0780 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Pden_1417 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Pden_0877 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Pden_2599 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Pden_1921 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Pden_2784 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Pden_3878 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Pden_0907 sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA D Pden_0908 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Pden_0909 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC D Pden_3188 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D Pden_1506 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D Pden_0142 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D Pden_2455 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D Pden_2445 protein of unknown function DUF796 K11903 hcp; type VI secretion system secreted protein Hcp D Pden_2450 conserved hypothetical protein K11906 vasD; type VI secretion system protein VasD D Pden_2453 ImcF domain protein K11891 impL; type VI secretion system protein ImpL D Pden_2452 OmpA/MotB domain protein K11892 impK; type VI secretion system protein ImpK D Pden_2440 ATPase AAA-2 domain protein K11907 vasG; type VI secretion system protein VasG B B 09132 Signal transduction C 02020 Two-component system [PATH:pde02020] D Pden_3938 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Pden_4325 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Pden_4330 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Pden_1771 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Pden_2600 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D Pden_1382 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Pden_1620 flagellin domain protein K02406 fliC; flagellin D Pden_2630 flagellar motor protein K02556 motA; chemotaxis protein MotA D Pden_2645 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D Pden_0311 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Pden_0310 two component transcriptional regulator, winged helix family K07774 tctD; two-component system, OmpR family, response regulator TctD D Pden_0306 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Pden_3073 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Pden_4402 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Pden_3268 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Pden_3222 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Pden_0307 putative tricarboxylic transport membrane protein K07794 tctB; putative tricarboxylic transport membrane protein D Pden_3074 putative tricarboxylic transport membrane protein K07794 tctB; putative tricarboxylic transport membrane protein D Pden_3223 protein of unknown function DUF1468 K07794 tctB; putative tricarboxylic transport membrane protein D Pden_4403 protein of unknown function DUF1468 K07794 tctB; putative tricarboxylic transport membrane protein D Pden_0308 Uncharacterized protein UPF0065 K07795 tctC; putative tricarboxylic transport membrane protein D Pden_3075 Uncharacterized protein UPF0065 K07795 tctC; putative tricarboxylic transport membrane protein D Pden_4404 Uncharacterized protein UPF0065 K07795 tctC; putative tricarboxylic transport membrane protein D Pden_3699 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Pden_2833 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Pden_4110 HpcH/HpaI aldolase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D Pden_4236 respiratory nitrate reductase alpha subunit apoprotein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D Pden_4235 respiratory nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D Pden_4233 respiratory nitrate reductase gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D Pden_4234 respiratory nitrate reductase chaperone NarJ K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW D Pden_1783 signal transduction histidine kinase, glucose-6-phosphate specific K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D Pden_0786 transcriptional regulator, LuxR family K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D Pden_3450 beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D Pden_3956 metal dependent phosphohydrolase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D Pden_4461 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D Pden_4130 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Pden_4129 two component, sigma54 specific, transcriptional regulator, Fis family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D Pden_3702 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_1397 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_4462 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_4547 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_4128 PAS/PAC sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D Pden_4127 two component, sigma54 specific, transcriptional regulator, Fis family K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D Pden_2663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2870 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2907 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2026 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_4819 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_4655 putative regulatory lipoprotein K08478 pgtC; phosphoglycerate transport regulatory protein PgtC D Pden_4656 integral membrane sensor signal transduction histidine kinase K08475 pgtB; two-component system, NtrC family, phosphoglycerate transport system sensor histidine kinase PgtB [EC:2.7.13.3] D Pden_4657 two component, sigma54 specific, transcriptional regulator, Fis family K08476 pgtA; two-component system, NtrC family, phosphoglycerate transport system response regulator PgtA D Pden_2963 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Pden_4764 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Pden_4406 histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Pden_4405 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Pden_4763 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Pden_4368 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein D Pden_4765 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein D Pden_4987 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor D Pden_3094 NADH ubiquinone oxidoreductase, 20 kDa subunit K23548 hupU; uptake hydrogenase small subunit [EC:1.12.99.6] D Pden_3095 nickel-dependent hydrogenase, large subunit K23549 hupV; uptake hydrogenase large subunit [EC:1.12.99.6] D Pden_3093 PAS/PAC sensor signal transduction histidine kinase K19661 hupT; two-component system, NtrC family, sensor histidine kinase HupT/HoxJ [EC:2.7.13.3] D Pden_3109 two component, sigma54 specific, transcriptional regulator, Fis family K19641 hupR; two-component system, NtrC family, response regulator HupR/HoxA D Pden_3097 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6] D Pden_3098 nickel-dependent hydrogenase, large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6] D Pden_3100 Ni/Fe-hydrogenase, b-type cytochrome subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit D Pden_3982 response regulator receiver modulated diguanylate cyclase K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65] D Pden_0595 multi-sensor hybrid histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D Pden_4504 conserved hypothetical protein K13588 chpT; histidine phosphotransferase ChpT D Pden_4096 two component transcriptional regulator, winged helix family K13584 ctrA; two-component system, cell cycle response regulator CtrA D Pden_4122 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP D Pden_4121 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D Pden_4120 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Pden_1075 amino acid ABC transporter ATP-binding protein, PAAT family K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D Pden_1074 L-aspartate ABC transporter membrane protein / L-glutamate ABC transporter membrane protein K10002 gltK; glutamate/aspartate transport system permease protein D Pden_1073 L-glutamate ABC transporter membrane protein / L-aspartate ABC transporter membrane protein K10003 gltJ; glutamate/aspartate transport system permease protein D Pden_1072 L-glutamate-binding protein / L-aspartate-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein D Pden_2779 integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Pden_2781 two component transcriptional regulator, Fis family K15012 regA; two-component system, response regulator RegA D Pden_2305 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Pden_2306 Cytochrome b/b6, N-terminal domain K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Pden_2307 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D Pden_1937 cytochrome c, class I K08738 CYC; cytochrome c D Pden_1808 cytochrome c, class I K08738 CYC; cytochrome c D Pden_4157 sulfide dehydrogenase (flavocytochrome), cytochrome c subunit K08738 CYC; cytochrome c D Pden_1848 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Pden_1847 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Pden_1846 Cbb3-type cytochrome oxidase component K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D Pden_1845 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Pden_4010 cytochrome bd quinol oxidase subunit 1 apoprotein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Pden_4011 cytochrome bd quinol oxidase subunit 2 apoprotein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Pden_2727 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pden_1559 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Pden_5129 RNA polymerase, sigma-24 subunit, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D Pden_4534 putative FecR K07165 fecR; transmembrane sensor D Pden_2978 putative FecR K07165 fecR; transmembrane sensor D Pden_5130 putative FecR K07165 fecR; transmembrane sensor D Pden_1630 putative FecR K07165 fecR; transmembrane sensor C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome [PATH:pde04146] D Pden_4104 L-carnitine dehydratase/bile acid-inducible protein F K01796 E5.1.99.4; alpha-methylacyl-CoA racemase [EC:5.1.99.4] D Pden_0048 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pden_1720 Malonyl-CoA decarboxylase K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9] D Pden_0729 aminotransferase, class V K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Pden_3921 serine-glyoxylate aminotransferase apoenzyme K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Pden_2961 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Pden_3641 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Pden_4878 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Pden_4611 Catalase K03781 katE; catalase [EC:1.11.1.6] D Pden_1634 superoxide dismutase, copper/zinc binding protein K04565 SOD1; superoxide dismutase, Cu-Zn family [EC:1.15.1.1] D Pden_0518 Superoxide dismutase K04564 SOD2; superoxide dismutase, Fe-Mn family [EC:1.15.1.1] C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis [PATH:pde04148] D Pden_2047 arginase K01476 rocF; arginase [EC:3.5.3.1] D Pden_1162 Arginase/agmatinase/formiminoglutamase K01476 rocF; arginase [EC:3.5.3.1] D Pden_2321 Orn/DAP/Arg decarboxylase 2 K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Pden_2305 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:pde02024] D Pden_4124 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Pden_2132 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Pden_2136 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Pden_4791 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Pden_3934 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Pden_0786 transcriptional regulator, LuxR family K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D Pden_3194 type II secretion system protein E K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8] D Pden_0156 type II secretion system protein E K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8] D Pden_1484 type II secretion system protein E K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8] D Pden_0155 Conjugal transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC D Pden_1483 Conjugal transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC D Pden_3195 Conjugal transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC D Pden_1482 conjugal transfer protein trbB K20529 trbD; type IV secretion system protein TrbD D Pden_3196 conjugal transfer protein TrbB K20529 trbD; type IV secretion system protein TrbD D Pden_0154 conjugal transfer protein TrbB K20529 trbD; type IV secretion system protein TrbD D Pden_0153 AAA ATPase K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D Pden_1481 AAA ATPase K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D Pden_3197 AAA ATPase K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D Pden_1480 conjugal transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ D Pden_0152 conjugal transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ D Pden_3198 conjugal transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ D Pden_3200 TrbL/VirB6 plasmid conjugal transfer protein K07344 trbL; type IV secretion system protein TrbL D Pden_1478 TrbL/VirB6 plasmid conjugal transfer protein K07344 trbL; type IV secretion system protein TrbL D Pden_0150 TrbL/VirB6 plasmid conjugal transfer protein K07344 trbL; type IV secretion system protein TrbL D Pden_3201 Conjugal transfer protein K20531 trbF; type IV secretion system protein TrbF D Pden_0149 Conjugal transfer protein K20531 trbF; type IV secretion system protein TrbF D Pden_1477 Conjugal transfer protein K20531 trbF; type IV secretion system protein TrbF D Pden_1476 Conjugal transfer protein TrbG/VirB9/CagX K20532 trbG; type IV secretion system protein TrbG D Pden_0148 Conjugal transfer protein TrbG/VirB9/CagX K20532 trbG; type IV secretion system protein TrbG D Pden_3202 Conjugal transfer protein TrbG/VirB9/CagX K20532 trbG; type IV secretion system protein TrbG D Pden_1475 conjugation TrbI family protein K20533 trbI; type IV secretion system protein TrbI D Pden_3203 conjugation TrbI family protein K20533 trbI; type IV secretion system protein TrbI D Pden_0147 conjugation TrbI family protein K20533 trbI; type IV secretion system protein TrbI D Pden_4943 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_0829 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_2151 polyamine ABC trasnporter, periplasmic polyamine-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_2152 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_4603 putative ABC transporter binding protein component K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_1739 ABC polyamine/opine transporter, periplasmic substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_3460 ABC polyamine/opine transporter, periplasmic substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_4873 putative spermidine/putrescine transport system substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_0467 putative spermidine/putrescine-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_5047 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_0831 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pden_5050 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pden_4946 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pden_0469 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pden_4602 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pden_2149 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pden_4875 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pden_3462 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pden_3461 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pden_5049 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pden_4945 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pden_0468 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pden_2150 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pden_0830 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pden_3459 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pden_4944 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pden_0466 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pden_0832 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pden_2153 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pden_4874 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pden_5048 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pden_4601 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pden_3932 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_5095 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_4797 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_0052 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_4272 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_1717 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_4869 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_3574 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_0175 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_3054 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_4994 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_3929 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_5096 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_4796 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_4271 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_1714 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_0050 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_0176 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_3057 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_3575 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_5000 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_3928 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_5097 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_4795 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_0051 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_4270 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_1713 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_0177 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_3058 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_4999 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_3576 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family / amino acid/amide ABC transporter membrane protein 2, HAAT family / amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_3931 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_5098 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_3055 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_4998 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_4794 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_0049 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_4269 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_1716 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_0178 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_3930 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_5099 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_3056 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_4793 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_0053 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_4268 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_1715 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_0179 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_4997 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_0048 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pden_4139 putative ferric uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D Pden_2375 3,4-dihydroxy-2-butanone 4-phosphate synthase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Pden_1561 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Pden_1569 extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D Pden_1328 extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D Pden_1570 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein D Pden_1327 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein D Pden_1326 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein D Pden_1571 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein D Pden_1572 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein D Pden_1325 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein D Pden_1573 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein D Pden_1324 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein D Pden_3800 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_5072 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_4961 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_1248 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_0931 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_0810 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_4285 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_1341 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_0608 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_0239 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_1608 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_3801 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_0802 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_5074 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_4960 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_1249 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_0238 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_4284 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_1342 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_0607 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_1609 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_3802 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_0801 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_5075 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_4903 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_4959 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_1250 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_0237 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_4283 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_1343 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_0606 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_1610 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_3803 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_0800 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_5076 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_4958 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_1251 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_1344 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_0609 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_0236 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_1611 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_4282 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_1252 ABC transporter related protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D Pden_0235 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Pden_4281 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Pden_0877 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Pden_0741 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Pden_3712 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Pden_0780 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Pden_1417 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Pden_2599 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Pden_1921 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Pden_2784 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Pden_3878 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:pde02030] D Pden_4771 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pden_2160 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pden_4851 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pden_0247 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pden_1671 extracellular solute-binding protein, family 5 K12368 dppA; dipeptide transport system substrate-binding protein D Pden_4464 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Pden_1789 surface presentation of antigens (SPOA) protein K02416 fliM; flagellar motor switch protein FliM D Pden_2651 surface presentation of antigens (SPOA) protein K02417 fliN; flagellar motor switch protein FliN D Pden_2630 flagellar motor protein K02556 motA; chemotaxis protein MotA D Pden_2645 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D Pden_1404 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pden_2695 putative chemotaxis MotB protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:pde02040] D Pden_2112 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Pden_2649 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Pden_4464 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Pden_2109 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Pden_1622 hypothetical protein K02414 fliK; flagellar hook-length control protein FliK D Pden_2648 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Pden_2118 conserved hypothetical protein K02415 fliL; flagellar protein FliL D Pden_1789 surface presentation of antigens (SPOA) protein K02416 fliM; flagellar motor switch protein FliM D Pden_2651 surface presentation of antigens (SPOA) protein K02417 fliN; flagellar motor switch protein FliN D Pden_2652 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Pden_2113 export protein FliQ, family 3 K02420 fliQ; flagellar biosynthesis protein FliQ D Pden_2627 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Pden_2628 type III secretion FHIPEP protein K02400 flhA; flagellar biosynthesis protein FlhA D Pden_2626 type III secretion exporter K02401 flhB; flagellar biosynthesis protein FlhB D Pden_2116 SAF domain K02386 flgA; flagellar basal body P-ring formation protein FlgA D Pden_2110 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Pden_2111 flagellar basal body rod protein K02388 flgC; flagellar basal-body rod protein FlgC D Pden_1623 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Pden_2696 protein of unknown function DUF1078 domain protein K02390 flgE; flagellar hook protein FlgE D Pden_2114 flagellar basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF D Pden_2115 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Pden_2117 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Pden_2699 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Pden_2697 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Pden_2698 putative flagellar hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL D Pden_1620 flagellin domain protein K02406 fliC; flagellin D Pden_2630 flagellar motor protein K02556 motA; chemotaxis protein MotA D Pden_2645 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D Pden_1404 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pden_2695 putative chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D Pden_4072 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Pden_2086 RNA polymerase, sigma 32 subunit, RpoH K03086 rpoD; RNA polymerase primary sigma factor D Pden_4987 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D Pden_4060 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04981 Folate transport and metabolism [PATH:pde04981] D Pden_1385 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] D Pden_0920 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Pden_1935 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Pden_3952 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04980 Cobalamin transport and metabolism [PATH:pde04980] D Pden_2549 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Pden_2431 LAO/AO transport system ATPase K07588 MMAA; GTPase [EC:3.6.5.-] D Pden_3681 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D Pden_1935 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Pden_3952 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:pde01501] D Pden_2763 outer membrane porin K08720 ompU; outer membrane protein OmpU D Pden_1868 Beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Pden_1096 glycoside hydrolase, family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Pden_3451 transcriptional regulator, LysR family K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D Pden_3450 beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D Pden_1569 extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D Pden_1328 extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D Pden_1570 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein D Pden_1327 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein D Pden_1326 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein D Pden_1571 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein D Pden_1572 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein D Pden_1325 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein D Pden_1573 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein D Pden_1324 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein D Pden_2941 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_1780 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_2721 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_3447 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_3448 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pden_2722 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pden_2942 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pden_1781 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pden_2727 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pden_1816 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Pden_4035 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Pden_0585 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:pde01502] D Pden_2406 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Pden_1204 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Pden_4490 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Pden_3689 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Pden_0587 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Pden_0588 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Pden_4495 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:pde01503] D Pden_0822 peptidase domain protein K01406 prtC; serralysin [EC:3.4.24.40] D Pden_1817 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Pden_1382 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Pden_2941 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_1780 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_2721 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_3447 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_3448 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pden_2722 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pden_2942 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pden_1781 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pden_2727 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pden_3907 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:pde01000] C 01001 Protein kinases [BR:pde01001] D Pden_1548 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D Pden_0819 putative anti-sigma regulatory factor, serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D Pden_0845 ATPases involved in chromosome partitioning-like protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D Pden_3938 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Pden_1771 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Pden_0311 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Pden_3283 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Pden_1783 signal transduction histidine kinase, glucose-6-phosphate specific K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D Pden_4130 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Pden_4128 PAS/PAC sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D Pden_4656 integral membrane sensor signal transduction histidine kinase K08475 pgtB; two-component system, NtrC family, phosphoglycerate transport system sensor histidine kinase PgtB [EC:2.7.13.3] D Pden_2963 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Pden_4764 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Pden_4406 histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Pden_3093 PAS/PAC sensor signal transduction histidine kinase K19661 hupT; two-component system, NtrC family, sensor histidine kinase HupT/HoxJ [EC:2.7.13.3] D Pden_0595 multi-sensor hybrid histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D Pden_2779 integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:pde01009] D Pden_2682 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Pden_0812 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:pde01002] D Pden_2717 signal peptidase II, Aspartic peptidase, MEROPS family A08 K03101 lspA; signal peptidase II [EC:3.4.23.36] D Pden_3101 Hydrogenase 1 maturation peptidase HyaD, Aspartic peptidase, MEROPS family A31 K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-] D Pden_3696 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Pden_1435 glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Pden_4346 colicin V processing peptidase, Cysteine peptidase, MEROPS family C39 K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D Pden_3939 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Pden_0488 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Pden_0619 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Pden_2476 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Pden_3554 hypothetical protein K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Pden_1145 intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124] D Pden_1240 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB D Pden_4053 alanyl aminopeptidase, Metallo peptidase, MEROPS family M01 K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Pden_1944 peptidyl-dipeptidase Dcp, Metallo peptidase, MEROPS family M03A K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D Pden_1832 oligoendopeptidase, pepF/M3 family K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D Pden_0822 peptidase domain protein K01406 prtC; serralysin [EC:3.4.24.40] D Pden_2715 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Pden_2714 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Pden_2707 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Pden_0903 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Pden_4634 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Pden_1105 peptidase M19, renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Pden_1304 dipeptidase AC, Metallo peptidase, MEROPS family M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Pden_1592 dipeptidase AC, Metallo peptidase, MEROPS family M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Pden_2842 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Pden_3894 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Pden_3118 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Pden_4919 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Pden_1979 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Pden_2193 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D Pden_3700 carboxypeptidase Taq, Metallo peptidase, MEROPS family M32 K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D Pden_0690 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Pden_4825 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Pden_0694 Heat shock protein, Metallo peptidase, MEROPS family M48B K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D Pden_3998 site-2 protease, Metallo peptidase, MEROPS family M50B K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D Pden_2659 murein endopeptidase, Metallo peptidase, MEROPS family M74 K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D Pden_1382 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Pden_3148 protease Do K04772 degQ; serine protease DegQ [EC:3.4.21.-] D Pden_2143 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Pden_1319 peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Pden_1578 peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Pden_0017 ATP-dependent Clp protease proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Pden_1265 ATP-dependent Clp protease proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Pden_3609 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Pden_2142 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Pden_0420 signal peptidase I, Serine peptidase, MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89] D Pden_2590 prolyl aminopeptidase, Serine peptidase, MEROPS family S33 K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Pden_2508 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Pden_4813 Penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] D Pden_4002 Penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] D Pden_2337 Rhomboid family protein K07059 K07059; rhomboid family protein D Pden_2899 prohead peptidase, Unknown type peptidase, MEROPS family U35 K06904 GP4; Escherichia/Staphylococcus phage prohead protease D Pden_2636 phage prohead protease, HK97 family K06904 GP4; Escherichia/Staphylococcus phage prohead protease D Pden_2791 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D Pden_0660 gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Pden_4229 peptidase U32 K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV D Pden_4228 peptidase U32 K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU D Pden_2687 microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 K03592 pmbA; PmbA protein D Pden_4322 microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 K03568 tldD; TldD protein D Pden_2364 alpha-2-macroglobulin domain protein K06894 yfhM; alpha-2-macroglobulin D Pden_3671 protease FtsH subunit HflC K04087 hflC; modulator of FtsH protease HflC D Pden_3670 protease FtsH subunit HflK K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:pde01003] D Pden_4426 glycogen synthase (ADP-glucose) K00703 glgA; starch synthase [EC:2.4.1.21] D Pden_2288 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Pden_0637 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D Pden_1816 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Pden_1315 glycosyl transferase, family 2 K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-] D Pden_1582 glycosyl transferase, family 2 K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-] D Pden_4755 putative carbohydrate binding protein K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397] C 01005 Lipopolysaccharide biosynthesis proteins [BR:pde01005] D Pden_3907 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Pden_3909 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Pden_4486 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Pden_1241 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Pden_3908 protein of unknown function DUF1009 K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Pden_2094 lipid-A-disaccharide kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Pden_1273 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Pden_2571 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Pden_2093 3-deoxy-D-manno-octulosonic-acid transferase-like protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Pden_1233 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Pden_2299 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Pden_2608 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Pden_2773 glycosyl transferase, group 1 K12989 lpcC; mannosyltransferase [EC:2.4.1.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:pde01011] D Pden_1961 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Pden_4491 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Pden_4494 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Pden_0589 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Pden_0586 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Pden_2406 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Pden_1204 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Pden_4490 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Pden_3689 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Pden_3973 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Pden_0588 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Pden_4495 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Pden_0491 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Pden_3955 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Pden_1816 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Pden_0637 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D Pden_4035 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Pden_0585 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Pden_2143 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Pden_1319 peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Pden_1578 peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Pden_2288 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Pden_1240 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB D Pden_2659 murein endopeptidase, Metallo peptidase, MEROPS family M74 K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D Pden_0705 Lytic transglycosylase, catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Pden_2510 lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D Pden_2903 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D Pden_1817 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Pden_0578 N-acetylmuramoyl-L-alanine amidase, family 2 K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:pde01004] D Pden_1770 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Pden_0669 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Pden_1861 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Pden_1650 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Pden_2438 3-oxoacyl-(acyl carrier protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Pden_2904 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Pden_2349 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_1769 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_3419 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_1255 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_3541 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_5053 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Pden_1649 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D Pden_3906 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Pden_0857 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Pden_1651 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Pden_0520 lipolytic enzyme, G-D-S-L family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Pden_4550 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_4213 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_2909 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Pden_2225 propionyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D Pden_0048 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pden_2005 AMP-dependent synthetase and ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D Pden_1860 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Pden_2553 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Pden_2015 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:pde01008] D Pden_2383 Isochorismatase K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14] D Pden_2386 2,3-dihydroxybenzoate-AMP ligase K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71] D Pden_2387 condensation domain protein K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72] D Pden_2564 amino acid adenylation domain K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72] D Pden_3008 AMP-dependent synthetase and ligase K12238 pchD; salicylate---[aryl-carrier protein] ligase [EC:6.2.1.61] D Pden_4676 FMN-dependent alpha-hydroxy acid dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46] C 01006 Prenyltransferases [BR:pde01006] D Pden_0399 farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D Pden_2031 Trans-hexaprenyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Pden_3995 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Pden_3992 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Pden_0625 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Pden_4320 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:pde01007] D Pden_1576 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D Pden_1321 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D Pden_3717 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pden_0884 glutamate--tRNA(Gln) ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pden_4079 glutamyl-tRNA synthetase, class Ic K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D Pden_1913 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Pden_3953 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Pden_4063 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Pden_1870 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Pden_2045 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Pden_3612 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Pden_2331 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Pden_2765 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Pden_2183 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Pden_1925 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Pden_0538 glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Pden_0540 glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Pden_2429 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Pden_1299 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Pden_0955 Ser-tRNA(Thr) hydrolase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Pden_0598 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Pden_2270 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Pden_2262 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Pden_0938 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_3420 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Pden_0630 aromatic amino acid aminotransferase apoenzyme K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Pden_0652 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pden_1409 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Pden_1822 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D Pden_2917 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Pden_0648 aminotransferase, class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Pden_2041 acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Pden_2338 4-aminobutyrate aminotransferase apoenzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D Pden_2919 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Pden_4273 aminotransferase K03851 tpa; taurine-pyruvate aminotransferase [EC:2.6.1.77] D Pden_0798 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Pden_3425 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D Pden_2602 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Pden_1464 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Pden_0729 aminotransferase, class V K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Pden_3921 serine-glyoxylate aminotransferase apoenzyme K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Pden_0813 phosphoserine aminotransferase apoenzyme K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:pde00194] D Pden_3819 ATP synthase F1 subcomplex epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Pden_3818 ATP synthase F1 subcomplex beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Pden_3817 ATP synthase F1 subcomplex gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Pden_3816 ATP synthase F1 subcomplex alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Pden_3815 ATP synthase F1 subcomplex delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Pden_2876 H+-transporting two-sector ATPase, B/B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Pden_2877 H+-transporting two-sector ATPase, B/B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Pden_2878 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Pden_2879 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Pden_2880 conserved hypothetical protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:pde03000] D Pden_2061 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_3372 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_0263 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_3182 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_1500 transcriptional regulator, AraC family K05372 ybtA; AraC family transcriptional regulator D Pden_3089 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D Pden_4239 DNA-O6-methylguanine--protein-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Pden_2432 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Pden_2874 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Pden_3933 transcriptional regulator, AraC family with amidase-like domain K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D Pden_1463 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Pden_0304 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Pden_3489 transcriptional regulator, LysR family K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D Pden_2318 transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D Pden_1351 LysR, substrate-binding protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D Pden_0724 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D Pden_1904 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Pden_3271 transcriptional regulator, LysR family K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway D Pden_3451 transcriptional regulator, LysR family K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D Pden_4118 transcriptional regulator, LysR family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D Pden_0940 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D Pden_1694 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D Pden_1173 transcriptional regulator, LysR family K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes D Pden_5068 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator D Pden_2619 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D Pden_5078 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Pden_1046 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Pden_1014 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Pden_2621 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Pden_1685 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Pden_0276 conserved hypothetical sugar-binding protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Pden_4766 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D Pden_1978 periplasmic binding protein/LacI transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D Pden_4783 transcriptional regulator, GntR family K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D Pden_4940 transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D Pden_0708 transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D Pden_2105 transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D Pden_2475 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D Pden_2929 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Pden_4400 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Pden_4833 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D Pden_4274 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D Pden_1648 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D Pden_1434 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D Pden_3536 transcriptional regulator, GntR family K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator D Pden_1898 transcriptional regulator, TetR family K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D Pden_1121 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator D Pden_4681 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Pden_0232 transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D Pden_5058 transcriptional regulator, TetR family K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D Pden_4756 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pden_1469 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pden_0942 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pden_4624 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pden_2266 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pden_3626 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pden_0653 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D Pden_5122 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D Pden_0410 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D Pden_1759 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D Pden_4644 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D Pden_0786 transcriptional regulator, LuxR family K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D Pden_3512 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D Pden_2677 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D Pden_1068 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Pden_1260 manganese uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Pden_4139 putative ferric uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D Pden_3922 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D Pden_5019 transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D Pden_1850 putative transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Pden_4238 putative transcriptional regulator, Crp/Fnr family K13642 ftrB; CRP/FNR family transcriptional regulator, transcriptional activator FtrB D Pden_2958 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Pden_3024 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D Pden_1690 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D Pden_4172 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D Pden_3342 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Pden_0217 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Pden_3136 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Pden_0166 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Pden_4472 protein of unknown function DUF955 K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D Pden_1350 transcriptional regulator, XRE family K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D Pden_1365 transcriptional regulator, XRE family K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator D Pden_1785 helix-turn-helix domain protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator D Pden_0250 transcriptional regulator, RpiR family K23238 rpiR; RpiR family transcriptional regulator, repressor of rpiB and als operon D Pden_2230 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Pden_0265 transcriptional regulator, XRE family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Pden_4979 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D Pden_2664 putative transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein D Pden_0485 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator D Pden_0943 L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Pden_4220 FMN-binding domain protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D Pden_2486 FMN-binding domain protein K19343 nirI; NosR/NirI family transcriptional regulator, nitrite reductase regulator D Pden_1875 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D Pden_0007 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Pden_5036 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Pden_2912 replication protein, putative K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Pden_1541 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Pden_1825 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D Pden_0009 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D Pden_0035 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D Pden_3673 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D Pden_4812 transcriptional regulator, ArsR family K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D Pden_4724 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D Pden_0102 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein D Pden_4832 negative transcriptional regulator K07734 paiB; transcriptional regulator D Pden_0436 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator D Pden_0547 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Pden_1562 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR D Pden_0582 protein of unknown function UPF0040 K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:pde03021] D Pden_0784 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Pden_0747 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Pden_0749 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Pden_1401 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Pden_4072 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Pden_2086 RNA polymerase, sigma 32 subunit, RpoH K03086 rpoD; RNA polymerase primary sigma factor D Pden_2820 RNA polymerase, sigma subunit, ECF family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Pden_4772 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Pden_4558 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Pden_1137 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Pden_5129 RNA polymerase, sigma-24 subunit, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D Pden_2216 RNA polymerase, sigma 32 subunit, RpoH K03089 rpoH; RNA polymerase sigma-32 factor D Pden_4987 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor D Pden_2592 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Pden_1553 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Pden_0742 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG D Pden_0495 response regulator receiver protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D Pden_0820 anti-sigma-factor antagonist K04749 rsbV; anti-sigma B factor antagonist D Pden_0819 putative anti-sigma regulatory factor, serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D Pden_0547 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Pden_0426 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D Pden_0002 transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:pde03019] D Pden_2965 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12] D Pden_0419 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Pden_2228 beta-lactamase domain protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D Pden_2853 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Pden_1743 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Pden_4366 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Pden_2656 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Pden_4060 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Pden_2759 3' exoribonuclease K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Pden_0002 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Pden_2302 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Pden_3654 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Pden_4585 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Pden_4124 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Pden_1302 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Pden_1594 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Pden_3709 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Pden_1835 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Pden_4500 protein of unknown function DUF344 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D Pden_2575 Polynucleotide adenylyltransferase region K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D Pden_2509 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D Pden_2850 Uncharacterized P-loop ATPase protein UPF0042 K06958 rapZ; RNase adapter protein RapZ D Pden_0640 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:pde03011] D Pden_3786 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1 D Pden_3726 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2 D Pden_0765 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3 D Pden_4303 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D Pden_0776 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5 D Pden_0891 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6 D Pden_0754 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7 D Pden_0773 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8 D Pden_2970 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D Pden_0758 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10 D Pden_0783 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D Pden_0753 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12 D Pden_0782 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D Pden_0772 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14 D Pden_2760 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15 D Pden_3881 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16 D Pden_0768 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D Pden_0890 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18 D Pden_0763 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19 D Pden_4514 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20 D Pden_2267 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21 D Pden_0744 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1 D Pden_0762 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D Pden_0759 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3 D Pden_0760 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4 D Pden_0771 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D Pden_0774 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D Pden_0889 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9 D Pden_0745 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10 D Pden_0743 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D Pden_0746 LSU ribosomal protein L12P / LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12 D Pden_2969 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D Pden_0769 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D Pden_0779 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D Pden_0766 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16 D Pden_0785 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17 D Pden_0775 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D Pden_3884 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19 D Pden_2273 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20 D Pden_4103 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21 D Pden_0764 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22 D Pden_0761 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23 D Pden_0770 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24 D Pden_4102 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27 D Pden_2433 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28 D Pden_0767 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29 D Pden_0777 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D Pden_3885 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31 D Pden_1859 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32 D Pden_4292 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33 D Pden_0872 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34 D Pden_2274 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35 D Pden_0055 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36 D Pden_4077 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25 D Pden_R0006 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pden_R0039 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pden_R0002 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pden_R0043 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pden_R0005 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pden_R0040 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:pde03009] D Pden_0419 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Pden_0418 GTP-binding protein Era K03595 era; GTPase D Pden_4056 small GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] D Pden_0547 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Pden_2592 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Pden_1553 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Pden_0742 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG D Pden_0897 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Pden_2720 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Pden_0594 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Pden_1755 16S rRNA m(2)G 1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D Pden_2323 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Pden_0624 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Pden_0005 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Pden_0583 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Pden_3958 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Pden_3826 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Pden_3990 23S rRNA Um-2552 2'-O-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D Pden_2517 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Pden_1954 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Pden_0579 protein of unknown function DUF519 K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D Pden_2505 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Pden_2577 23S rRNA m(5)U-1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Pden_2804 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Pden_4142 RNA-binding S4 domain protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Pden_0790 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D Pden_2215 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Pden_0529 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Pden_4313 GCN5-related N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D Pden_3882 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D Pden_2010 SSU ribosomal protein S12P methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D Pden_4196 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D Pden_0622 [LSU ribosomal protein L11P]-lysine N-methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D Pden_2965 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12] D Pden_0510 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D Pden_4366 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Pden_2427 small GTP-binding protein K03977 engA; GTPase D Pden_4123 GTP-binding protein HflX K03665 hflX; GTPase D Pden_0435 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Pden_1400 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Pden_2799 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D Pden_2591 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP D Pden_2518 iojap-like protein K09710 ybeB; ribosome-associated protein D Pden_3693 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor D Pden_2604 SSU ribosomal protein S30P / sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor D Pden_0334 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:pde03016] D Pden_2259 ribonuclease T2 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19] D Pden_3717 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pden_0884 glutamate--tRNA(Gln) ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pden_1299 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Pden_3612 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Pden_2765 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Pden_2045 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Pden_1870 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Pden_2183 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Pden_0598 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Pden_0955 Ser-tRNA(Thr) hydrolase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Pden_2429 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Pden_4063 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Pden_2331 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Pden_1925 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Pden_2270 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Pden_2262 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Pden_1913 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Pden_3953 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Pden_1742 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D Pden_2683 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Pden_1856 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Pden_2227 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D Pden_0534 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D Pden_2801 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D Pden_3963 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Pden_0435 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Pden_3992 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Pden_0003 tRNA modification GTPase trmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D Pden_0004 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Pden_2723 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Pden_2300 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Pden_0873 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D Pden_R0055 Bacterial RNase P class A K01978 rnpB; M1 RNA D Pden_0010 RNAse PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D Pden_1890 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D Pden_2609 3'-5' exonuclease K03684 rnd; ribonuclease D [EC:3.1.13.5] D Pden_2923 2',5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D Pden_2008 ABC transporter related protein K06020 ettA; energy-dependent translational throttle protein EttA D Pden_1576 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D Pden_1321 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D Pden_0538 glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Pden_0540 glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Pden_4079 glutamyl-tRNA synthetase, class Ic K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D Pden_4688 YbaK/prolyl-tRNA synthetase associated region K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D Pden_4143 CMP/dCMP deaminase, zinc-binding protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D Pden_1420 tRNA-U16,U17-dihydrouridine synthase K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D Pden_3701 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D Pden_0396 MiaB-like tRNA modifying enzyme K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D Pden_3121 Methyltransferase type 12 K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D Pden_3698 RNA methyltransferase, TrmH family, group 1 K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D Pden_4078 gid protein K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D Pden_3883 tRNA (Guanine37-N(1)-) methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Pden_2804 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Pden_4098 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Pden_0875 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D Pden_2558 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Pden_4304 iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein D Pden_0731 glycine cleavage T protein (aminomethyl transferase) K06980 ygfZ; tRNA-modifying protein YgfZ D Pden_0614 Queuosine biosynthesis protein K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D Pden_4185 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Pden_4184 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Pden_4183 preQ(0) biosynthesis protein QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Pden_4182 GTP cyclohydrolase I K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Pden_2290 domain of unknown function DUF1730 K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D Pden_0523 Rhodanese domain protein K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D Pden_1891 tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D Pden_0689 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D Pden_0530 peptidase M22, glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D Pden_1998 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D Pden_2853 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Pden_2759 3' exoribonuclease K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Pden_0483 PilT protein domain protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] C 03012 Translation factors [BR:pde03012] D Pden_2594 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2 D Pden_1747 ABC transporter related protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D Pden_3725 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts D Pden_0734 translation elongation factor Tu K02358 tuf; elongation factor Tu D Pden_0756 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Pden_0755 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D Pden_2825 selenocysteine-specific translation elongation factor SelB K03833 selB; selenocysteine-specific elongation factor D Pden_0894 bacterial peptide chain release factor 1 (bRF-1) K02835 prfA; peptide chain release factor 1 D Pden_3994 ribosome recycling factor K02838 frr; ribosome recycling factor D Pden_0895 [protein release factor]-glutamine N5-methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D Pden_1264 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D Pden_1790 bacterial translation initiation factor 1 (bIF-1) K02518 infA; translation initiation factor IF-1 D Pden_2743 translation elongation factor P (EF-P) K02356 efp; elongation factor P D Pden_1655 translation elongation factor P (EF-P) K02356 efp; elongation factor P D Pden_1654 Lysine--tRNA ligase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D Pden_1815 bacterial peptide chain release factor 2 (bRF-2) K02836 prfB; peptide chain release factor 2 D Pden_0922 bacterial peptide chain release factor 3 (bRF-3) K02837 prfC; peptide chain release factor 3 D Pden_0636 Class I peptide chain release factor K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:pde03110] D Pden_3812 ATP-dependent Clp protease, ATP-binding subunit clpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D Pden_0062 ATPase AAA-2 domain protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D Pden_4012 ATPase AAA-2 domain protein K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D Pden_1266 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D Pden_2790 heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D Pden_2302 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Pden_4255 molecular chaperone, DnaK K04046 yegD; hypothetical chaperone protein D Pden_3654 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Pden_4585 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Pden_2303 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Pden_1801 heat shock protein DnaJ domain protein K05801 djlA; DnaJ like chaperone protein D Pden_2573 Hsp33 protein K04083 hslO; molecular chaperone Hsp33 D Pden_0008 GrpE protein K03687 GRPE; molecular chaperone GrpE D Pden_3146 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Pden_3646 heat shock protein Hsp20 K04080 ibpA; molecular chaperone IbpA D Pden_4588 putative molecular chaperone small heat shock protein, HSP20 family K04080 ibpA; molecular chaperone IbpA D Pden_3145 heat shock protein Hsp20 K04080 ibpA; molecular chaperone IbpA D Pden_1827 heat shock protein Hsp15 K04762 hslR; ribosome-associated heat shock protein Hsp15 D Pden_4586 chaperonin Cpn10 K04078 groES; chaperonin GroES D Pden_1382 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Pden_0690 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Pden_4825 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Pden_2879 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Pden_2784 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Pden_0519 protein of unknown function DUF461 K09796 pccA; periplasmic copper chaperone A D Pden_4444 protein of unknown function DUF461 K09796 pccA; periplasmic copper chaperone A D Pden_3107 hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D Pden_3108 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB D Pden_2133 putative peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D Pden_2598 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D Pden_4232 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D Pden_0899 PpiC-type peptidyl-prolyl cis-trans isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D Pden_2793 thioredoxin K03671 TXN; thioredoxin D Pden_2371 Thioredoxin domain K05838 ybbN; putative thioredoxin D Pden_2586 glutaredoxin 3 K03676 grxC; glutaredoxin 3 D Pden_1392 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D Pden_1410 periplasmic protein thiol--disulfide oxidoreductase DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:pde04131] D Pden_1746 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Pden_1060 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Pden_4465 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Pden_2276 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Pden_2658 major facilitator superfamily MFS_1 K06902 UMF1; MFS transporter, UMF1 family C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:pde03032] D Pden_3617 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Pden_2061 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_3372 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_0263 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_3182 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_0405 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Pden_1863 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Pden_3787 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Pden_2833 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Pden_4469 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Pden_4073 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Pden_3806 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_3361 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_3167 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_0123 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_1762 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Pden_2834 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pden_0970 DNA polymerase III beta subunit family protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pden_0342 DNA polymerase III beta subunit family protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pden_0904 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Pden_2767 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Pden_2145 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Pden_5114 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_2815 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_4556 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_0449 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_3649 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Pden_2102 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Pden_1853 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Pden_4083 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Pden_0261 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Pden_3865 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Pden_0416 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Pden_2546 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Pden_1836 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Pden_0659 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:pde03036] D Pden_2061 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_3372 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_0263 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_3182 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_0419 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Pden_1533 probable methylase/helicase K26273 SBNO; protein strawberry notch D Pden_3156 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Pden_1545 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Pden_2782 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Pden_3349 nucleoid protein H-NS K03746 hns; DNA-binding protein H-NS D Pden_0405 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Pden_1863 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Pden_3787 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Pden_0508 conserved hypothetical protein K18997 cbpM; chaperone modulatory protein CbpM D Pden_2833 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Pden_0818 hemimethylated DNA binding protein K11940 hspQ; heat shock protein HspQ D Pden_1767 Ferritin, Dps family protein K04047 dps; starvation-inducible DNA-binding protein D Pden_4124 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Pden_1904 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Pden_4756 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pden_1469 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pden_0942 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pden_4624 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pden_2266 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pden_3626 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Pden_2738 chromosome segregation protein SMC K03529 smc; chromosome segregation protein D Pden_1867 condensin subunit ScpA K05896 scpA; segregation and condensation protein A D Pden_1866 condensin subunit ScpB K06024 scpB; segregation and condensation protein B D Pden_4488 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Pden_2017 ABC transporter related protein K09812 ftsE; cell division transport system ATP-binding protein D Pden_0585 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Pden_2673 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Pden_0584 hypothetical protein K03586 ftsL; cell division protein FtsL D Pden_4489 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D Pden_4496 cell division protein FtsW K03588 ftsW; cell division protein FtsW D Pden_2016 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Pden_4487 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Pden_1881 protein of unknown function DUF710 K09888 zapA; cell division protein ZapA D Pden_1989 AFG1-family ATPase K06916 zapE; cell division protein ZapE D Pden_1817 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Pden_2941 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_1780 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_2721 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_3447 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_4713 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Pden_4712 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Pden_4711 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Pden_4032 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Pden_4033 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D Pden_4034 putative rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D Pden_4036 cell elongation-specific peptidoglycan biosynthesis regulator RodA K05837 rodA; rod shape determining protein RodA D Pden_3887 chromosome partitioning protein K03496 parA; chromosome partitioning protein D Pden_1306 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Pden_0006 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Pden_1590 plasmid segregation oscillating ATPase ParF K03496 parA; chromosome partitioning protein D Pden_5035 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Pden_0007 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Pden_5036 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Pden_2912 replication protein, putative K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Pden_1541 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Pden_2546 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Pden_1836 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Pden_0004 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Pden_0005 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Pden_4078 gid protein K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D Pden_2501 phage integrase family protein K03733 xerC; integrase/recombinase XerC D Pden_1279 phage integrase family protein K04763 xerD; integrase/recombinase XerD D Pden_0581 putative Mrp (multidrug resistance-associated proteins) family protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D Pden_3305 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D Pden_0879 small GTP-binding protein K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:pde03400] D Pden_2138 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Pden_2097 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Pden_2873 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Pden_2596 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Pden_0494 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Pden_0058 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Pden_1946 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Pden_4239 DNA-O6-methylguanine--protein-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Pden_2432 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Pden_2874 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Pden_3793 DNA-N1-methyladenine dioxygenase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] D Pden_4607 Uracil-DNA glycosylase superfamily K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Pden_0438 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Pden_3945 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Pden_2024 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Pden_4512 DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Pden_0929 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Pden_2372 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Pden_1877 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Pden_4083 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Pden_1853 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Pden_2252 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D Pden_1308 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D Pden_1588 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D Pden_2312 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D Pden_4295 ATP-dependent DNA helicase, Rep family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Pden_1438 pathogenesis-related protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Pden_0747 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Pden_0749 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Pden_0784 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Pden_1401 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Pden_3811 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Pden_0827 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Pden_2713 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Pden_4028 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Pden_0398 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Pden_1762 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Pden_2834 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pden_0970 DNA polymerase III beta subunit family protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pden_0342 DNA polymerase III beta subunit family protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Pden_0904 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Pden_2767 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Pden_2145 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Pden_5114 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_2815 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_4556 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_0449 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Pden_3649 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Pden_3806 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_3361 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_3167 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_0123 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_0261 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Pden_2062 T/G mismatch-specific endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] D Pden_0597 recA protein K03553 recA; recombination protein RecA D Pden_0695 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Pden_0693 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Pden_0696 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Pden_2498 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Pden_3941 DNA replication and repair protein RadA K04485 radA; DNA repair protein RadA/Sms D Pden_2835 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Pden_4082 DEAD/DEAH box helicase domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Pden_2837 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Pden_3647 recombination protein RecR K06187 recR; recombination protein RecR D Pden_4484 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Pden_2794 UvrD-like DNA helicase, C-terminal domain K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D Pden_1380 protein of unknown function DUF853, NPT hydrolase putative K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D Pden_4186 conserved hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D Pden_3865 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Pden_0416 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Pden_0659 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Pden_0405 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Pden_1863 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Pden_3787 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Pden_2656 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Pden_3156 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Pden_1545 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Pden_2782 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Pden_3349 nucleoid protein H-NS K03746 hns; DNA-binding protein H-NS D Pden_0732 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Pden_2142 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Pden_4289 conserved hypothetical protein K14160 imuA; protein ImuA D Pden_4290 conserved hypothetical protein K14161 imuB; protein ImuB D Pden_4291 error-prone DNA polymerase, DnaE-like protein K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D Pden_0413 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Pden_4377 ribonucleoside-diphosphate reductase class Ib alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Pden_1384 ribonucleoside-diphosphate reductase class II K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Pden_0951 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Pden_4378 ribonucleoside-diphosphate reductase class Ib beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:pde03029] D Pden_2306 Cytochrome b/b6, N-terminal domain K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Pden_2594 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2 D Pden_3725 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts D Pden_0734 translation elongation factor Tu K02358 tuf; elongation factor Tu D Pden_0756 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Pden_0755 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D Pden_1828 helicase domain protein K17675 SUPV3L1; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:5.6.2.6] D Pden_0418 GTP-binding protein Era K03595 era; GTPase D Pden_1913 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Pden_2765 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Pden_2183 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Pden_1870 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Pden_5054 Amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Pden_2671 Amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Pden_0576 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Pden_1929 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Pden_0575 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Pden_0949 DNA/RNA non-specific endonuclease K01173 ENDOG; endonuclease G, mitochondrial D Pden_3806 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_3361 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_3167 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_0123 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pden_3999 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family D Pden_2302 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Pden_0008 GrpE protein K03687 GRPE; molecular chaperone GrpE D Pden_3654 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Pden_4585 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Pden_4586 chaperonin Cpn10 K04078 groES; chaperonin GroES D Pden_2303 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Pden_3963 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Pden_1392 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D Pden_0581 putative Mrp (multidrug resistance-associated proteins) family protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D Pden_4320 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Pden_4318 cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D Pden_3699 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Pden_0877 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Pden_5104 Surfeit locus 1 family protein K14998 SURF1; surfeit locus 1 family protein D Pden_4316 SURF1 protein K14998 SURF1; surfeit locus 1 family protein D Pden_2780 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1 D Pden_4443 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1 B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:pde02000] D Pden_1493 ABC transporter related protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D Pden_3017 ABC transporter related protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D Pden_1492 ABC transporter related protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D Pden_3018 ABC transporter related protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D Pden_0730 ABC transporter related protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Pden_4346 colicin V processing peptidase, Cysteine peptidase, MEROPS family C39 K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D Pden_0739 ABC transporter related protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D Pden_4200 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Pden_1143 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Pden_2002 lipid A ABC exporter family, fused ATPase and inner membrane subunits K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Pden_2576 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Pden_1425 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Pden_1708 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Pden_2413 ABC transporter related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Pden_2036 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D Pden_4336 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D Pden_5133 ABC transporter related protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D Pden_2937 ABC transporter related protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D Pden_3444 ABC transporter related protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D Pden_3652 ABC transporter related protein K15738 uup; ABC transport system ATP-binding/permease protein D Pden_1798 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D Pden_4344 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D Pden_4343 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Pden_1799 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Pden_4342 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Pden_1800 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Pden_1797 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Pden_4341 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Pden_2665 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Pden_1167 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Pden_2666 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Pden_2667 molybdate ABC transporter, ATPase subunit K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Pden_5006 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pden_4109 putative sulfonate/nitrate transport system substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pden_5012 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D Pden_4881 Substrate-binding region of ABC-type glycine betaine transport system K15553 ssuA; sulfonate transport system substrate-binding protein D Pden_5005 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pden_4108 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pden_4882 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pden_5011 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Pden_5004 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pden_4107 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pden_5010 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pden_4883 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Pden_4911 extracellular solute-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D Pden_1078 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Pden_4649 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Pden_4447 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Pden_4658 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Pden_0309 periplasmic iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D Pden_4912 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Pden_4650 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Pden_4659 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Pden_4446 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Pden_1079 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Pden_4913 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Pden_4651 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Pden_4660 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Pden_4448 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Pden_1077 carbohydrate ABC transporter ATP-binding protein, CUT1 family K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Pden_4502 ABC polyamine transporter, periplasmic substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D Pden_1021 spermidine/putrescine ABC transporter, periplasmic binding protein, putative K11069 potD; spermidine/putrescine transport system substrate-binding protein D Pden_4067 binding-protein-dependent transport systems inner membrane component K11070 potC; spermidine/putrescine transport system permease protein D Pden_1023 binding-protein-dependent transport systems inner membrane component K11070 potC; spermidine/putrescine transport system permease protein D Pden_4068 binding-protein-dependent transport systems inner membrane component K11071 potB; spermidine/putrescine transport system permease protein D Pden_1022 binding-protein-dependent transport systems inner membrane component K11071 potB; spermidine/putrescine transport system permease protein D Pden_1024 ABC transporter related protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D Pden_4066 ABC transporter related protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D Pden_4943 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_0829 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_2151 polyamine ABC trasnporter, periplasmic polyamine-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_2152 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_4603 putative ABC transporter binding protein component K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_1739 ABC polyamine/opine transporter, periplasmic substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_3460 ABC polyamine/opine transporter, periplasmic substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_4873 putative spermidine/putrescine transport system substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_0467 putative spermidine/putrescine-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_5047 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Pden_0831 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pden_5050 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pden_4946 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pden_0469 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pden_4602 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pden_2149 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pden_4875 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pden_3462 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Pden_3461 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pden_5049 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pden_4945 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pden_0468 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pden_2150 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pden_0830 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Pden_3459 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pden_4944 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pden_0466 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pden_0832 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pden_2153 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pden_4874 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pden_5048 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pden_4601 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Pden_3856 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pden_4749 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pden_1195 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pden_0945 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pden_2285 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pden_1899 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Pden_3857 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Pden_4746 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Pden_4747 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Pden_1194 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Pden_0946 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Pden_1900 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Pden_3858 ABC transporter related protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Pden_4748 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Pden_1901 ABC transporter related protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Pden_1193 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Pden_0947 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Pden_4888 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein D Pden_4885 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein D Pden_4887 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein D Pden_4886 glycine betaine/L-proline ABC transporter, ATPase subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D Pden_0036 NlpA lipoprotein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein D Pden_0033 binding-protein-dependent transport systems inner membrane component K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein D Pden_0034 ABC transporter related protein K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein D Pden_4169 putative sulfonate/nitrate transport system substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Pden_2355 putative ABC transporter periplasmic solute-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Pden_1488 putative sulfonate/nitrate transport system substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Pden_3265 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Pden_4039 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components TauA K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Pden_4168 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Pden_2356 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Pden_1489 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Pden_5126 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Pden_4167 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Pden_2357 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Pden_4360 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Pden_5128 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Pden_4178 mannitol ABC transporter ATP-binding protein / sorbitol ABC transporter ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pden_4439 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pden_2469 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pden_4842 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pden_1087 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pden_3407 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pden_1050 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pden_2472 carbohydrate ABC transporter substrate-binding protein, CUT1 family K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D Pden_2471 carbohydrate ABC transporter membrane protein 1, CUT1 family K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D Pden_2470 carbohydrate ABC transporter membrane protein 2, CUT1 family K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D Pden_3404 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17315 gtsA; glucose/mannose transport system substrate-binding protein D Pden_1090 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17315 gtsA; glucose/mannose transport system substrate-binding protein D Pden_3405 carbohydrate ABC transporter membrane protein 1, CUT1 family K17316 gtsB; glucose/mannose transport system permease protein D Pden_1089 carbohydrate ABC transporter membrane protein 1, CUT1 family K17316 gtsB; glucose/mannose transport system permease protein D Pden_1088 carbohydrate ABC transporter membrane protein 2, CUT1 family K17317 gtsC; glucose/mannose transport system permease protein D Pden_3406 carbohydrate ABC transporter membrane protein 2, CUT1 family K17317 gtsC; glucose/mannose transport system permease protein D Pden_4442 carbohydrate ABC transporter substrate-binding protein, CUT1 family K10236 thuE; trehalose/maltose transport system substrate-binding protein D Pden_4441 carbohydrate ABC transporter membrane protein 1, CUT1 family K10237 thuF; trehalose/maltose transport system permease protein D Pden_4440 carbohydrate ABC transporter membrane protein 2, CUT1 family K10238 thuG; trehalose/maltose transport system permease protein D Pden_1032 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10543 xylF; D-xylose transport system substrate-binding protein D Pden_1034 inner-membrane translocator K10544 xylH; D-xylose transport system permease protein D Pden_1033 monosaccharide ABC transporter ATP-binding protein, CUT2 family K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D Pden_2745 multiple monosaccharide-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein D Pden_2747 multiple monosaccharide ABC transporter membrane protein K10547 gguB; putative multiple sugar transport system permease protein D Pden_2746 multiple monosaccharide ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Pden_0505 mannose-binding protein / fructose-binding protein / ribose-binding protein K10552 frcB; fructose transport system substrate-binding protein D Pden_0504 fructose ABC transporter membrane protein / mannose ABC transporter membrane protein / ribose ABC transporter membrane protein K10553 frcC; fructose transport system permease protein D Pden_0503 ribose ABC transporter ATP-binding protein / fructose ABC transporter ATP-binding protein / mannose ABC transporter ATP-binding protein K10554 frcA; fructose transport system ATP-binding protein D Pden_4771 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pden_2160 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pden_4851 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pden_0247 monosaccharide ABC transporter substrate-binding protein, CUT2 family K10439 rbsB; ribose transport system substrate-binding protein D Pden_4770 monosaccharide ABC transporter membrane protein, CUT2 family K10440 rbsC; ribose transport system permease protein D Pden_2158 monosaccharide ABC transporter membrane protein, CUT2 family K10440 rbsC; ribose transport system permease protein D Pden_4849 monosaccharide ABC transporter membrane protein, CUT2 family K10440 rbsC; ribose transport system permease protein D Pden_0249 monosaccharide ABC transporter membrane protein, CUT2 family K10440 rbsC; ribose transport system permease protein D Pden_4769 monosaccharide ABC transporter ATP-binding protein, CUT2 family K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Pden_2159 monosaccharide ABC transporter ATP-binding protein, CUT2 family K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Pden_4850 monosaccharide ABC transporter ATP-binding protein, CUT2 family K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Pden_0248 monosaccharide ABC transporter ATP-binding protein, CUT2 family K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Pden_1681 monosaccharide ABC transporter substrate-binding protein, CUT2 family K17213 K17213; inositol transport system substrate-binding protein D Pden_1684 monosaccharide ABC transporter substrate-binding protein, CUT2 family K17213 K17213; inositol transport system substrate-binding protein D Pden_1682 monosaccharide ABC transporter membrane protein, CUT2 family K17214 K17214; inositol transport system permease protein D Pden_1683 monosaccharide ABC transporter ATP-binding protein, CUT2 family K17215 K17215; inositol transport system ATP-binding protein D Pden_4387 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17321 glpV; glycerol transport system substrate-binding protein D Pden_4390 carbohydrate ABC transporter membrane protein 1, CUT1 family K17322 glpP; glycerol transport system permease protein D Pden_4389 carbohydrate ABC transporter membrane protein 2, CUT1 family K17323 glpQ; glycerol transport system permease protein D Pden_4392 carbohydrate ABC transporter ATP-binding protein, CUT1 family K17324 glpS; glycerol transport system ATP-binding protein D Pden_4391 carbohydrate ABC transporter ATP-binding protein, CUT1 family K17325 glpT; glycerol transport system ATP-binding protein D Pden_4190 carbohydrate ABC transporter substrate-binding protein, CUT1 family K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D Pden_4189 carbohydrate ABC transporter membrane protein 1, CUT1 family K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D Pden_4188 carbohydrate ABC transporter membrane protein 2, CUT1 family K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D Pden_4187 carbohydrate ABC transporter ATP-binding protein, CUT1 family K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D Pden_4181 mannitol-binding protein / sorbitol-binding protein K10227 smoE; polyol transport system substrate-binding protein D Pden_4180 mannitol ABC transporter membrane protein / sorbitol ABC transporter membrane protein K10228 smoF; polyol transport system permease protein D Pden_4844 mannitol ABC transporter membrane protein / sorbitol ABC transporter membrane protein K10228 smoF; polyol transport system permease protein D Pden_4179 sorbitol ABC transporter membrane protein / mannitol ABC transporter membrane protein K10229 smoG; polyol transport system permease protein D Pden_4843 sorbitol ABC transporter membrane protein / mannitol ABC transporter membrane protein K10229 smoG; polyol transport system permease protein D Pden_0528 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins D Pden_0933 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins D Pden_1766 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins D Pden_0526 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein D Pden_1764 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein D Pden_1765 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein D Pden_0525 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein D Pden_0527 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D Pden_1763 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D Pden_1268 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Pden_2315 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Pden_3690 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Pden_2317 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Pden_3691 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Pden_2316 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Pden_2314 conserved hypothetical protein K18480 linN; cholesterol transport system auxiliary component D Pden_2034 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Pden_4845 sorbitol-binding protein / mannitol-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Pden_1048 carbohydrate ABC transporter membrane protein 1, CUT1 family K02025 ABC.MS.P; multiple sugar transport system permease protein D Pden_1049 carbohydrate ABC transporter membrane protein 2, CUT1 family K02026 ABC.MS.P1; multiple sugar transport system permease protein D Pden_4330 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Pden_4329 phosphate ABC transporter membrane protein 1, PhoT family K02037 pstC; phosphate transport system permease protein D Pden_4328 phosphate ABC transporter membrane protein 2, PhoT family K02038 pstA; phosphate transport system permease protein D Pden_4327 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Pden_4786 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D Pden_4784 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D Pden_4785 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D Pden_4787 phosphonate ABC transporter, ATPase subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Pden_1072 L-glutamate-binding protein / L-aspartate-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein D Pden_1074 L-aspartate ABC transporter membrane protein / L-glutamate ABC transporter membrane protein K10002 gltK; glutamate/aspartate transport system permease protein D Pden_1073 L-glutamate ABC transporter membrane protein / L-aspartate ABC transporter membrane protein K10003 gltJ; glutamate/aspartate transport system permease protein D Pden_1075 amino acid ABC transporter ATP-binding protein, PAAT family K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D Pden_0793 L-aspartate-binding protein / L-glutamate-binding protein / L-glutamine-binding protein / L-asparagine-binding protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D Pden_0794 L-asparagine ABC transporter membrane protein / L-glutamine ABC transporter membrane protein / L-glutamate ABC transporter membrane protein / L-aspartate ABC transporter membrane protein K09970 aapQ; general L-amino acid transport system permease protein D Pden_0795 L-glutamate ABC transporter membrane protein / L-asparagine ABC transporter membrane protein / L-glutamine ABC transporter membrane protein / L-aspartate ABC transporter membrane protein K09971 aapM; general L-amino acid transport system permease protein D Pden_0796 L-aspartate ABC transporter ATP-binding protein / L-glutamine ABC transporter ATP-binding protein / L-glutamate ABC transporter ATP-binding protein / L-asparagine ABC transporter ATP-binding protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D Pden_1152 amino acid ABC transporter ATP-binding protein, PAAT family K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D Pden_4864 amino acid ABC transporter substrate-binding protein, PAAT family K23061 lhpP; hydroxyproline transporter system substrate-binding protein D Pden_1025 amino acid ABC transporter substrate-binding protein, PAAT family K23061 lhpP; hydroxyproline transporter system substrate-binding protein D Pden_4863 amino acid ABC transporter membrane protein 1, PAAT family K23062 lhpM; hydroxyproline transport system permease protein D Pden_1026 amino acid ABC transporter membrane protein 1, PAAT family K23062 lhpM; hydroxyproline transport system permease protein D Pden_4862 amino acid ABC transporter membrane protein 2, PAAT family K23063 lhpN; hydroxyproline transport system permease protein D Pden_1027 amino acid ABC transporter membrane protein 2, PAAT family K23063 lhpN; hydroxyproline transport system permease protein D Pden_1028 amino acid ABC transporter ATP-binding protein, PAAT family K23064 lhpO; hydroxyproline transport system ATP-binding protein [EC:7.4.2.1] D Pden_4861 amino acid ABC transporter ATP-binding protein, PAAT family K23064 lhpO; hydroxyproline transport system ATP-binding protein [EC:7.4.2.1] D Pden_3932 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_5095 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_4797 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_0052 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_4272 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_1717 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_4869 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_3574 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_0175 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_3054 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_4994 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Pden_3929 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_5096 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_4796 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_4271 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_1714 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_0050 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_0176 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_3057 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_3575 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_5000 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Pden_3928 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_5097 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_4795 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_0051 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_4270 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_1713 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_0177 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_3058 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_4999 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Pden_3576 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family / amino acid/amide ABC transporter membrane protein 2, HAAT family / amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_3931 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_5098 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_3055 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_4998 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_4794 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_0049 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_4269 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_1716 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_0178 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Pden_3930 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_5099 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_3056 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_4793 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_0053 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_4268 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_1715 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_0179 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_4997 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Pden_4308 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D Pden_4307 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D Pden_4306 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein D Pden_4017 amino acid/amide ABC transporter substrate-binding protein, HAAT family K11959 urtA; urea transport system substrate-binding protein D Pden_4018 amino acid/amide ABC transporter membrane protein 1, HAAT family K11960 urtB; urea transport system permease protein D Pden_4019 amino acid/amide ABC transporter membrane protein 2, HAAT family K11961 urtC; urea transport system permease protein D Pden_4020 ABC transporter related protein K11962 urtD; urea transport system ATP-binding protein D Pden_4021 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K11963 urtE; urea transport system ATP-binding protein D Pden_3705 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pden_5081 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pden_0281 hydroxyectoine-binding protein / ectoine-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pden_1147 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pden_4667 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pden_4927 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pden_0716 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Pden_3703 amino acid ABC transporter membrane protein 2, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein D Pden_3704 amino acid ABC transporter membrane protein 1, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein D Pden_5079 amino acid ABC transporter membrane protein 1, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein D Pden_5080 amino acid ABC transporter membrane protein 2, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein D Pden_4924 amino acid ABC transporter membrane protein 1, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein D Pden_4925 amino acid ABC transporter membrane protein 2, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein D Pden_0282 hydroxyectoine ABC transporter membrane protein / ectoine ABC transporter membrane protein K02029 ABC.PA.P; polar amino acid transport system permease protein D Pden_0283 hydroxyectoine ABC transporter membrane protein / ectoine ABC transporter membrane protein K02029 ABC.PA.P; polar amino acid transport system permease protein D Pden_4669 amino acid ABC transporter membrane protein 2, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein D Pden_4670 amino acid ABC transporter membrane protein 1, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein D Pden_1148 amino acid ABC transporter membrane protein 1, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein D Pden_1149 amino acid ABC transporter membrane protein 2, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein D Pden_0718 amino acid ABC transporter membrane protein 2, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein D Pden_0717 amino acid ABC transporter membrane protein 1, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein D Pden_3706 amino acid ABC transporter ATP-binding protein, PAAT family K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Pden_5082 L-glutamate ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Pden_4926 amino acid ABC transporter ATP-binding protein, PAAT family K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Pden_0280 hydroxyectoine ABC transporter ATP-binding protein / ectoine ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Pden_4668 amino acid ABC transporter ATP-binding protein, PAAT family K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Pden_1150 amino acid ABC transporter ATP-binding protein, PAAT family K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Pden_0719 amino acid ABC transporter ATP-binding protein, PAAT family K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Pden_1569 extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D Pden_1328 extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D Pden_1570 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein D Pden_1327 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein D Pden_1326 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein D Pden_1571 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein D Pden_1572 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein D Pden_1325 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein D Pden_1573 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein D Pden_1324 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein D Pden_1671 extracellular solute-binding protein, family 5 K12368 dppA; dipeptide transport system substrate-binding protein D Pden_1670 binding-protein-dependent transport systems inner membrane component K12369 dppB; dipeptide transport system permease protein D Pden_1669 binding-protein-dependent transport systems inner membrane component K12370 dppC; dipeptide transport system permease protein D Pden_1668 ABC transporter related protein K12371 dppD; dipeptide transport system ATP-binding protein D Pden_1667 ABC transporter related protein K12372 dppF; dipeptide transport system ATP-binding protein D Pden_3800 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_5072 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_4961 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_1248 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_0931 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_0810 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_4285 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_1341 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_0608 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_0239 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_1608 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Pden_3801 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_0802 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_5074 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_4960 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_1249 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_0238 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_4284 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_1342 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_0607 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_1609 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Pden_3802 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_0801 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_5075 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_4903 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_4959 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_1250 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_0237 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_4283 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_1343 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_0606 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_1610 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Pden_3803 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_0800 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_5076 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_4958 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_1251 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_1344 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_0609 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_0236 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_1611 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_4282 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Pden_1252 ABC transporter related protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D Pden_0235 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Pden_4281 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Pden_1807 extracellular solute-binding protein, family 5 K13893 yejA; microcin C transport system substrate-binding protein D Pden_1806 binding-protein-dependent transport systems inner membrane component K13894 yejB; microcin C transport system permease protein D Pden_1805 binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein D Pden_1804 ABC transporter related protein K13896 yejF; microcin C transport system ATP-binding protein D Pden_1140 periplasmic binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D Pden_1141 transport system permease protein K23228 fhuB; ferric hydroxamate transport system permease protein D Pden_1142 ABC transporter related protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D Pden_4203 periplasmic binding protein K25132 hmuT; heme transport system substrate-binding protein D Pden_4204 transport system permease protein K25133 hmuU; heme transport system permease protein D Pden_4205 ABC transporter related protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D Pden_3531 periplasmic binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D Pden_3522 periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D Pden_3532 transport system permease protein K23186 fepD; iron-siderophore transport system permease protein D Pden_3533 transport system permease protein K23186 fepD; iron-siderophore transport system permease protein D Pden_3523 transport system permease protein K23186 fepD; iron-siderophore transport system permease protein D Pden_3534 transport system permease protein K23187 fepG; iron-siderophore transport system permease protein D Pden_3524 transport system permease protein K23187 fepG; iron-siderophore transport system permease protein D Pden_3525 ABC transporter related protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D Pden_3529 ABC transporter related protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D Pden_0300 periplasmic binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein D Pden_0298 transport system permease protein K25283 yclO; iron-siderophore transport system permease protein D Pden_0299 transport system permease protein K25284 yclN; iron-siderophore transport system permease protein D Pden_0297 ABC transporter related protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-] D Pden_1774 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Pden_2980 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Pden_3033 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Pden_4829 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Pden_1362 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Pden_2567 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Pden_1168 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Pden_0866 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Pden_4383 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Pden_1367 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Pden_3010 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Pden_2981 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Pden_3031 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Pden_4830 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Pden_1361 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Pden_2568 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Pden_0865 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Pden_4384 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Pden_3011 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Pden_3012 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Pden_1169 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Pden_2982 ABC transporter related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Pden_3032 ABC transporter related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Pden_4828 ABC transporter related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Pden_1360 ABC transporter related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Pden_2569 ABC transporter related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Pden_1170 ABC transporter related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Pden_0864 ABC transporter related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Pden_4385 ABC transporter related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Pden_3013 ABC transporter related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Pden_4140 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein D Pden_4137 ABC-3 protein K09816 znuB; zinc transport system permease protein D Pden_4138 ABC transporter related protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Pden_1259 periplasmic solute binding protein K11604 sitA; manganese/iron transport system substrate-binding protein D Pden_1257 ABC-3 protein K11605 sitC; manganese/iron transport system permease protein D Pden_1256 ABC-3 protein K11606 sitD; manganese/iron transport system permease protein D Pden_1258 ABC transporter related protein K11607 sitB; manganese/iron transport system ATP-binding protein D Pden_5033 BioY protein K03523 bioY; biotin transport system substrate-specific component D Pden_1432 BioY protein K03523 bioY; biotin transport system substrate-specific component D Pden_5032 cobalt transport protein K16783 bioN; biotin transport system permease protein D Pden_5031 ABC transporter related protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D Pden_1597 periplasmic solute binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D Pden_1596 ABC-3 protein K02075 ABC.ZM.P; zinc/manganese transport system permease protein D Pden_1595 ABC transporter related protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D Pden_5039 ABC-2 type transporter K09688 kpsM; capsular polysaccharide transport system permease protein D Pden_2125 ABC-2 type transporter K09688 kpsM; capsular polysaccharide transport system permease protein D Pden_1234 capsule polysaccharide export protein-like protein K10107 kpsE; capsular polysaccharide transport system permease protein D Pden_2126 Capsule polysaccharide export protein-like protein K10107 kpsE; capsular polysaccharide transport system permease protein D Pden_5038 capsule polysaccharide export protein-like protein K10107 kpsE; capsular polysaccharide transport system permease protein D Pden_5037 ABC transporter related protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D Pden_1235 ABC transporter related protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D Pden_2127 ABC transporter related protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D Pden_0902 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Pden_0901 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Pden_2605 ABC transporter related protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Pden_4216 nitrous oxide maturation protein NosY K19341 nosY; Cu-processing system permease protein D Pden_4217 ABC transporter related protein K19340 nosF; Cu-processing system ATP-binding protein D Pden_1840 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E_F; lipoprotein-releasing system permease protein D Pden_1839 ABC transporter related protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Pden_1411 heme exporter protein CcmC K02195 ccmC; heme exporter protein C D Pden_1412 heme exporter protein CcmB K02194 ccmB; heme exporter protein B D Pden_1413 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D Pden_2016 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Pden_2017 ABC transporter related protein K09812 ftsE; cell division transport system ATP-binding protein D Pden_0030 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Pden_2013 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Pden_2042 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Pden_4687 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Pden_5055 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Pden_0029 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Pden_1855 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Pden_2014 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Pden_5056 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Pden_3300 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Pden_3299 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Pden_3966 FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D Pden_4379 Bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D Pden_0650 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Pden_2863 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Pden_1693 major facilitator superfamily MFS_1 K03762 proP; MFS transporter, MHS family, proline/betaine transporter D Pden_1103 major facilitator superfamily MFS_1 K03762 proP; MFS transporter, MHS family, proline/betaine transporter D Pden_1181 major facilitator superfamily MFS_1 K05548 benK; MFS transporter, AAHS family, benzoate transport protein D Pden_4252 major facilitator superfamily MFS_1 K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D Pden_4453 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Pden_4237 nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Pden_4241 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D Pden_4471 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D Pden_1778 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D Pden_3643 major facilitator superfamily MFS_1 K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D Pden_4835 major facilitator superfamily MFS_1 K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D Pden_2104 major facilitator superfamily MFS_1 K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D Pden_1166 major facilitator superfamily MFS_1 K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D Pden_2658 major facilitator superfamily MFS_1 K06902 UMF1; MFS transporter, UMF1 family D Pden_1496 major facilitator superfamily MFS_1 K05373 ybtX; MFS transporter, putative signal transducer D Pden_0278 major facilitator superfamily MFS_1 K08368 yaaU; MFS transporter, putative metabolite transport protein D Pden_1992 major facilitator superfamily MFS_1 K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D Pden_0863 PTSINtr with GAF domain, PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D Pden_2848 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D Pden_2849 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Pden_2603 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D Pden_3651 MIP family channel protein K06188 aqpZ; aquaporin Z D Pden_2032 ammonium transporter K03320 amt; ammonium transporter, Amt family D Pden_3618 Glutathione S-transferase, C-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_0332 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_0407 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_2579 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_2289 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_1834 Glutathione S-transferase, C-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_2769 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_2869 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_3640 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_2330 Glutathione S-transferase, N-terminal domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Pden_1129 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog D Pden_1130 conserved hypothetical protein K07114 yfbK; Ca-activated chloride channel homolog D Pden_1128 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog D Pden_3320 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog D Pden_2265 large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D Pden_3862 MscS Mechanosensitive ion channel K05802 mscK; potassium-dependent mechanosensitive channel D Pden_1386 magnesium transporter K06213 mgtE; magnesium transporter D Pden_0314 AmiS/UreI transporter K22112 amiS; putative amide transporter protein D Pden_3570 AmiS/UreI transporter K22112 amiS; putative amide transporter protein D Pden_2630 flagellar motor protein K02556 motA; chemotaxis protein MotA D Pden_2645 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D Pden_1404 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pden_2695 putative chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D Pden_0727 outer membrane transport energization protein ExbB K03561 exbB; biopolymer transport protein ExbB D Pden_0726 outer membrane transport energization protein ExbD K03559 exbD; biopolymer transport protein ExbD D Pden_0683 Cell division and transport-associated protein TolQ K03562 tolQ; biopolymer transport protein TolQ D Pden_0684 Cell division and transport-associated protein TolR K03560 tolR; biopolymer transport protein TolR D Pden_0789 camphor resistance protein CrcB K06199 crcB; fluoride exporter D Pden_4016 protein of unknown function UPF0187 K08994 yneE; ion channel-forming bestrophin family protein D Pden_0723 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Pden_3114 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Pden_3115 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Pden_1278 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Pden_2763 outer membrane porin K08720 ompU; outer membrane protein OmpU D Pden_0415 outer membrane protein K16079 omp31; outer membrane immunogenic protein D Pden_2464 hypothetical protein K16079 omp31; outer membrane immunogenic protein D Pden_0626 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Pden_0590 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein D Pden_4373 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor D Pden_4382 TonB-dependent receptor K16092 btuB; vitamin B12 transporter D Pden_1368 TonB-dependent receptor K16092 btuB; vitamin B12 transporter D Pden_1495 TonB-dependent receptor K15721 fyuA; pesticin/yersiniabactin receptor D Pden_5131 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D Pden_4535 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D Pden_2046 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D Pden_1628 TonB-dependent receptor, plug K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D Pden_1631 TonB-dependent receptor, plug K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D Pden_2610 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D Pden_0296 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D Pden_4201 TonB-dependent heme/hemoglobin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D Pden_1602 TonB-dependent receptor, plug K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D Pden_3521 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Pden_4827 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Pden_4173 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Pden_1171 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Pden_1139 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Pden_1775 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Pden_3029 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Pden_1427 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Pden_3527 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Pden_2727 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pden_2411 outer membrane efflux protein K12543 lapE; outer membrane protein, adhesin transport system D Pden_3449 RND efflux system, outer membrane lipoprotein, NodT family K18904 nodT; outer membrane protein, multidrug efflux system D Pden_2943 RND efflux system, outer membrane lipoprotein, NodT family K18904 nodT; outer membrane protein, multidrug efflux system D Pden_1559 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Pden_4636 Carbohydrate-selective porin OprB K07267 oprB; porin D Pden_3999 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family D Pden_4485 putative ComL lipoprotein K05807 bamD; outer membrane protein assembly factor BamD D Pden_2679 surface antigen (D15) K07278 tamA; translocation and assembly module TamA D Pden_2678 protein of unknown function DUF490 K09800 tamB; translocation and assembly module TamB D Pden_2606 OstA family protein K09774 lptA; lipopolysaccharide export system protein LptA D Pden_2607 conserved hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC D Pden_0900 Organic solvent tolerance protein K04744 lptD; LPS-assembly protein D Pden_2766 secreted periplasmic protein K03643 lptE; LPS-assembly lipoprotein D Pden_0162 MltA-interacting MipA family protein K07274 mipA; MipA family protein D Pden_3694 CBS domain containing protein K06189 corC; hemolysin (HlyC) family protein D Pden_1852 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D Pden_3448 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pden_2722 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pden_2942 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pden_1781 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pden_2655 acriflavin resistance protein K21134 triC; multidrug efflux pump D Pden_4057 small multidrug resistance protein K03297 emrE; small multidrug resistance pump D Pden_3948 small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE D Pden_4566 protein of unknown function DUF6, transmembrane K15269 pecM; probable blue pigment (indigoidine) exporter D Pden_2424 RarD protein, DMT superfamily transporter K05786 rarD; chloramphenicol-sensitive protein RarD D Pden_1837 protein of unknown function UPF0060 K09771 TC.SMR3; small multidrug resistance family-3 protein D Pden_2931 gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family D Pden_2927 L-lactate transport K03303 lutP; lactate permease D Pden_0591 putative tellurite resistance protein K03304 tehA; tellurite resistance protein D Pden_4529 Na+/solute symporter K14392 panF; sodium/pantothenate symporter D Pden_4552 Na+/solute symporter K14393 actP; cation/acetate symporter D Pden_4211 SSS sodium solute transporter superfamily K14393 actP; cation/acetate symporter D Pden_4368 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein D Pden_4765 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein D Pden_4125 cation transporter K03498 trkH; trk/ktr system potassium uptake protein D Pden_0536 cation transporter K03498 trkH; trk/ktr system potassium uptake protein D Pden_4126 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Pden_4693 uracil-xanthine permease K09016 rutG; putative pyrimidine permease RutG D Pden_3917 uracil-xanthine permease K24206 uacT; uric acid transporter D Pden_1277 uracil-xanthine permease K24206 uacT; uric acid transporter D Pden_3796 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Pden_3037 Cl-channel, voltage-gated family protein K03281 clcA; chloride channel protein, CIC family D Pden_4045 chromate transporter, chromate ion transporter (CHR) family K07240 chrA; chromate transporter D Pden_3337 chromate transporter, chromate ion transporter (CHR) family K07240 chrA; chromate transporter D Pden_3131 chromate transporter, chromate ion transporter (CHR) family K07240 chrA; chromate transporter D Pden_2612 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family D Pden_1731 sulfate transporter K03321 TC.SULP; sulfate permease, SulP family D Pden_3344 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family D Pden_3036 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family D Pden_4122 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP D Pden_4121 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D Pden_4120 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D Pden_3384 TRAP dicarboxylate transporter, DctM subunit K21393 yiaN; TRAP-type transport system large permease protein D Pden_3385 Tripartite ATP-independent periplasmic transporter, DctQ component K21394 yiaM; TRAP-type transport system small permease protein D Pden_3387 TRAP dicarboxylate transporter, DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein D Pden_0816 sodium-dependent inorganic phosphate (Pi) transporter K03324 yjbB; phosphate:Na+ symporter D Pden_3134 arsenical-resistance protein K03325 ACR3; arsenite transporter D Pden_0214 arsenical-resistance protein K03325 ACR3; arsenite transporter D Pden_3340 arsenical-resistance protein K03325 ACR3; arsenite transporter D Pden_0697 multisubunit potassium/proton antiporter, PhaB subunit / multisubunit potassium/proton antiporter, PhaA subunit K05559 phaA; multicomponent K+:H+ antiporter subunit A D Pden_1289 multisubunit potassium/proton antiporter, PhaB subunit / multisubunit potassium/proton antiporter, PhaA subunit K05559 phaA; multicomponent K+:H+ antiporter subunit A D Pden_0698 multisubunit potassium/proton antiporter, PhaC subunit K05560 phaC; multicomponent K+:H+ antiporter subunit C D Pden_1288 multisubunit potassium/proton antiporter, PhaC subunit K05560 phaC; multicomponent K+:H+ antiporter subunit C D Pden_1287 multisubunit potassium/proton antiporter, PhaD subunit K05561 phaD; multicomponent K+:H+ antiporter subunit D D Pden_0699 multisubunit potassium/proton antiporter, PhaD subunit K05561 phaD; multicomponent K+:H+ antiporter subunit D D Pden_0700 multisubunit potassium/proton antiporter, PhaE subunit K05562 phaE; multicomponent K+:H+ antiporter subunit E D Pden_1286 multisubunit potassium/proton antiporter, PhaE subunit K05562 phaE; multicomponent K+:H+ antiporter subunit E D Pden_0701 multisubunit potassium/proton antiporter, PhaF subunit K05563 phaF; multicomponent K+:H+ antiporter subunit F D Pden_1285 multisubunit potassium/proton antiporter, PhaF subunit K05563 phaF; multicomponent K+:H+ antiporter subunit F D Pden_0702 multisubunit potassium/proton antiporter, PhaG subunit K05564 phaG; multicomponent K+:H+ antiporter subunit G D Pden_1284 multisubunit potassium/proton antiporter, PhaG subunit K05564 phaG; multicomponent K+:H+ antiporter subunit G D Pden_3955 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Pden_2148 Auxin Efflux Carrier K13936 mdcF; malonate transporter and related proteins D Pden_2559 Auxin Efflux Carrier K13936 mdcF; malonate transporter and related proteins D Pden_1903 Lysine exporter protein (LYSE/YGGA) K06895 lysE; L-lysine exporter family protein LysE/ArgO D Pden_1470 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein D Pden_0856 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein D Pden_0429 AzlC family protein K26605 azlC; branched chain amino acid efflux pump D Pden_0430 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump D Pden_0306 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Pden_3073 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Pden_4402 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Pden_3268 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Pden_3222 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein D Pden_0307 putative tricarboxylic transport membrane protein K07794 tctB; putative tricarboxylic transport membrane protein D Pden_3074 putative tricarboxylic transport membrane protein K07794 tctB; putative tricarboxylic transport membrane protein D Pden_3223 protein of unknown function DUF1468 K07794 tctB; putative tricarboxylic transport membrane protein D Pden_4403 protein of unknown function DUF1468 K07794 tctB; putative tricarboxylic transport membrane protein D Pden_0308 Uncharacterized protein UPF0065 K07795 tctC; putative tricarboxylic transport membrane protein D Pden_3075 Uncharacterized protein UPF0065 K07795 tctC; putative tricarboxylic transport membrane protein D Pden_4404 Uncharacterized protein UPF0065 K07795 tctC; putative tricarboxylic transport membrane protein D Pden_2662 conserved hypothetical integral membrane protein K09125 yhhQ; queuosine precursor transporter D Pden_1253 protein of unknown function DUF125, transmembrane K22736 VIT; vacuolar iron transporter family protein D Pden_4013 multiple antibiotic resistance (MarC)-related protein K05595 marC; multiple antibiotic resistance protein D Pden_4496 cell division protein FtsW K03588 ftsW; cell division protein FtsW D Pden_1733 iron permease FTR1 K07243 FTR; high-affinity iron transporter D Pden_1736 protein of unknown function DUF451 K07224 efeO; iron uptake system component EfeO D Pden_1735 Dyp-type peroxidase family K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-] D Pden_0725 TonB family protein K03832 tonB; periplasmic protein TonB D Pden_0687 OmpA domain protein K03640 pal; peptidoglycan-associated lipoprotein D Pden_0685 Cell division and transport-associated protein TolA K03646 tolA; colicin import membrane protein D Pden_0686 TolB, N-terminal domain protein K03641 tolB; TolB protein D Pden_2966 cytochrome c biogenesis protein, transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein D Pden_4148 cytochrome c biogenesis protein, transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein D Pden_4236 respiratory nitrate reductase alpha subunit apoprotein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D Pden_4235 respiratory nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D Pden_4233 respiratory nitrate reductase gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D Pden_4593 molybdopterin guanine dinucleotide-containing S/N-oxide reductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-] D Pden_4335 type I secretion membrane fusion protein, HlyD family K12537 hasE; membrane fusion protein, type I secretion system D Pden_2037 type I secretion membrane fusion protein, HlyD family K12537 hasE; membrane fusion protein, type I secretion system D Pden_2412 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system D Pden_4345 secretion protein HlyD family protein K13408 cvaA; membrane fusion protein D Pden_2941 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_1780 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_2721 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_3447 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_2653 efflux transporter, RND family, MFP subunit K21136 triA; membrane fusion protein, multidrug efflux system D Pden_2654 efflux transporter, RND family, MFP subunit K21137 triB; membrane fusion protein, multidrug efflux system D Pden_5132 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system D Pden_2938 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system D Pden_3445 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system D Pden_0845 ATPases involved in chromosome partitioning-like protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D Pden_0846 lipopolysaccharide biosynthesis K25590 epsF; protein tyrosine kinase modulator D Pden_0917 Entericidin EcnAB K16348 ecnB; entericidin B D Pden_3977 cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF D Pden_1889 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D Pden_3915 Transthyretin K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D Pden_5008 copper resistance protein CopC K14166 ycnJ; copper transport protein C 02044 Secretion system [BR:pde02044] D Pden_2727 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Pden_2036 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D Pden_4336 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D Pden_4335 type I secretion membrane fusion protein, HlyD family K12537 hasE; membrane fusion protein, type I secretion system D Pden_2037 type I secretion membrane fusion protein, HlyD family K12537 hasE; membrane fusion protein, type I secretion system D Pden_2413 ABC transporter related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Pden_2412 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system D Pden_2411 outer membrane efflux protein K12543 lapE; outer membrane protein, adhesin transport system D Pden_4345 secretion protein HlyD family protein K13408 cvaA; membrane fusion protein D Pden_4346 colicin V processing peptidase, Cysteine peptidase, MEROPS family C39 K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D Pden_3718 ComEC/Rec2-related protein K02238 comEC; competence protein ComEC D Pden_2628 type III secretion FHIPEP protein K02400 flhA; flagellar biosynthesis protein FlhA D Pden_2626 type III secretion exporter K02401 flhB; flagellar biosynthesis protein FlhB D Pden_2649 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Pden_2109 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Pden_2651 surface presentation of antigens (SPOA) protein K02417 fliN; flagellar motor switch protein FliN D Pden_2652 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Pden_2113 export protein FliQ, family 3 K02420 fliQ; flagellar biosynthesis protein FliQ D Pden_2627 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Pden_3188 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D Pden_1506 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D Pden_0142 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D Pden_3194 type II secretion system protein E K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8] D Pden_0156 type II secretion system protein E K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8] D Pden_1484 type II secretion system protein E K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8] D Pden_0155 Conjugal transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC D Pden_1483 Conjugal transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC D Pden_3195 Conjugal transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC D Pden_1482 conjugal transfer protein trbB K20529 trbD; type IV secretion system protein TrbD D Pden_3196 conjugal transfer protein TrbB K20529 trbD; type IV secretion system protein TrbD D Pden_0154 conjugal transfer protein TrbB K20529 trbD; type IV secretion system protein TrbD D Pden_0153 AAA ATPase K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D Pden_1481 AAA ATPase K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D Pden_3197 AAA ATPase K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D Pden_3201 Conjugal transfer protein K20531 trbF; type IV secretion system protein TrbF D Pden_0149 Conjugal transfer protein K20531 trbF; type IV secretion system protein TrbF D Pden_1477 Conjugal transfer protein K20531 trbF; type IV secretion system protein TrbF D Pden_1476 Conjugal transfer protein TrbG/VirB9/CagX K20532 trbG; type IV secretion system protein TrbG D Pden_0148 Conjugal transfer protein TrbG/VirB9/CagX K20532 trbG; type IV secretion system protein TrbG D Pden_3202 Conjugal transfer protein TrbG/VirB9/CagX K20532 trbG; type IV secretion system protein TrbG D Pden_1475 conjugation TrbI family protein K20533 trbI; type IV secretion system protein TrbI D Pden_3203 conjugation TrbI family protein K20533 trbI; type IV secretion system protein TrbI D Pden_0147 conjugation TrbI family protein K20533 trbI; type IV secretion system protein TrbI D Pden_1480 conjugal transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ D Pden_0152 conjugal transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ D Pden_3198 conjugal transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ D Pden_3200 TrbL/VirB6 plasmid conjugal transfer protein K07344 trbL; type IV secretion system protein TrbL D Pden_1478 TrbL/VirB6 plasmid conjugal transfer protein K07344 trbL; type IV secretion system protein TrbL D Pden_0150 TrbL/VirB6 plasmid conjugal transfer protein K07344 trbL; type IV secretion system protein TrbL D Pden_2453 ImcF domain protein K11891 impL; type VI secretion system protein ImpL D Pden_2452 OmpA/MotB domain protein K11892 impK; type VI secretion system protein ImpK D Pden_2451 protein of unknown function DUF876 K11893 impJ; type VI secretion system protein ImpJ D Pden_2448 protein of unknown function DUF1305 K11895 impH; type VI secretion system protein ImpH D Pden_2447 protein of unknown function DUF879 K11896 impG; type VI secretion system protein ImpG D Pden_2446 protein of unknown function DUF1316 K11897 impF; type VI secretion system protein ImpF D Pden_2444 protein of unknown function DUF877 K11900 impC; type VI secretion system protein ImpC D Pden_2443 Uncharacterized conserved protein UCP028301 K11901 impB; type VI secretion system protein ImpB D Pden_2442 ImpA domain protein K11902 impA; type VI secretion system protein ImpA D Pden_2445 protein of unknown function DUF796 K11903 hcp; type VI secretion system secreted protein Hcp D Pden_2455 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D Pden_2450 conserved hypothetical protein K11906 vasD; type VI secretion system protein VasD D Pden_2440 ATPase AAA-2 domain protein K11907 vasG; type VI secretion system protein VasG D Pden_2454 conserved hypothetical protein K11890 impM; type VI secretion system protein ImpM D Pden_2449 FHA domain containing protein K11894 impI; type VI secretion system protein ImpI D Pden_2599 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Pden_2784 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D Pden_1416 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Pden_0741 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Pden_1415 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D Pden_3712 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Pden_0780 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Pden_3878 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Pden_1921 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Pden_1417 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Pden_0877 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Pden_0907 sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA D Pden_0908 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Pden_0909 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:pde02042] D Pden_0723 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Pden_3114 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Pden_3115 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Pden_1278 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family C 02022 Two-component system [BR:pde02022] D Pden_3938 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Pden_4325 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Pden_1771 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Pden_2600 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D Pden_0311 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D Pden_0310 two component transcriptional regulator, winged helix family K07774 tctD; two-component system, OmpR family, response regulator TctD D Pden_3283 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Pden_3284 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Pden_1311 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Pden_1660 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Pden_1585 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Pden_1783 signal transduction histidine kinase, glucose-6-phosphate specific K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D Pden_4130 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Pden_4129 two component, sigma54 specific, transcriptional regulator, Fis family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D Pden_4128 PAS/PAC sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D Pden_4127 two component, sigma54 specific, transcriptional regulator, Fis family K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D Pden_4656 integral membrane sensor signal transduction histidine kinase K08475 pgtB; two-component system, NtrC family, phosphoglycerate transport system sensor histidine kinase PgtB [EC:2.7.13.3] D Pden_4657 two component, sigma54 specific, transcriptional regulator, Fis family K08476 pgtA; two-component system, NtrC family, phosphoglycerate transport system response regulator PgtA D Pden_2963 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Pden_4764 integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Pden_4406 histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Pden_4405 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Pden_4763 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D Pden_3093 PAS/PAC sensor signal transduction histidine kinase K19661 hupT; two-component system, NtrC family, sensor histidine kinase HupT/HoxJ [EC:2.7.13.3] D Pden_3109 two component, sigma54 specific, transcriptional regulator, Fis family K19641 hupR; two-component system, NtrC family, response regulator HupR/HoxA D Pden_3982 response regulator receiver modulated diguanylate cyclase K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65] D Pden_0595 multi-sensor hybrid histidine kinase K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D Pden_4096 two component transcriptional regulator, winged helix family K13584 ctrA; two-component system, cell cycle response regulator CtrA D Pden_2779 integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Pden_2781 two component transcriptional regulator, Fis family K15012 regA; two-component system, response regulator RegA D Pden_4454 putative nitrate transport protein K22067 nasS; two-component system, oxyanion-binding sensor D Pden_4455 response regulator receiver and ANTAR domain protein K07183 nasT; two-component system, response regulator / RNA-binding antiterminator C 02035 Bacterial motility proteins [BR:pde02035] D Pden_2109 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Pden_2652 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Pden_2113 export protein FliQ, family 3 K02420 fliQ; flagellar biosynthesis protein FliQ D Pden_2627 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Pden_2628 type III secretion FHIPEP protein K02400 flhA; flagellar biosynthesis protein FlhA D Pden_2626 type III secretion exporter K02401 flhB; flagellar biosynthesis protein FlhB D Pden_4464 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Pden_1789 surface presentation of antigens (SPOA) protein K02416 fliM; flagellar motor switch protein FliM D Pden_2651 surface presentation of antigens (SPOA) protein K02417 fliN; flagellar motor switch protein FliN D Pden_2649 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Pden_2699 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Pden_2116 SAF domain K02386 flgA; flagellar basal body P-ring formation protein FlgA D Pden_2117 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Pden_2648 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Pden_2118 conserved hypothetical protein K02415 fliL; flagellar protein FliL D Pden_2112 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Pden_1622 hypothetical protein K02414 fliK; flagellar hook-length control protein FliK D Pden_2110 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Pden_2111 flagellar basal body rod protein K02388 flgC; flagellar basal-body rod protein FlgC D Pden_1623 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Pden_2114 flagellar basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF D Pden_2115 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Pden_2696 protein of unknown function DUF1078 domain protein K02390 flgE; flagellar hook protein FlgE D Pden_2697 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Pden_2698 putative flagellar hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL D Pden_1620 flagellin domain protein K02406 fliC; flagellin D Pden_2630 flagellar motor protein K02556 motA; chemotaxis protein MotA D Pden_2645 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D Pden_1404 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Pden_2695 putative chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D Pden_1619 flagellar FlaF family protein K06602 flaF; flagellar biosynthesis activator protein FlaF C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:pde04812] D Pden_4032 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Pden_4487 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Pden_4488 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Pden_4713 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Pden_4712 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Pden_4711 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Pden_3887 chromosome partitioning protein K03496 parA; chromosome partitioning protein D Pden_1306 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Pden_0006 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Pden_1590 plasmid segregation oscillating ATPase ParF K03496 parA; chromosome partitioning protein D Pden_5035 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Pden_0007 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Pden_5036 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Pden_2912 replication protein, putative K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Pden_1541 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:pde04147] D Pden_4060 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Pden_1060 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Pden_4465 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Pden_1918 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Pden_2276 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Pden_1105 peptidase M19, renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Pden_1304 dipeptidase AC, Metallo peptidase, MEROPS family M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Pden_1592 dipeptidase AC, Metallo peptidase, MEROPS family M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Pden_3654 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Pden_4585 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Pden_2302 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Pden_1950 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Pden_0592 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Pden_0734 translation elongation factor Tu K02358 tuf; elongation factor Tu D Pden_0756 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Pden_2683 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Pden_1856 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Pden_4379 Bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D Pden_0048 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Pden_2663 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2870 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2907 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2026 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_4819 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Pden_2682 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Pden_0781 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Pden_3620 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Pden_2022 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Pden_0499 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Pden_1112 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Pden_4616 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Pden_3548 fumarylacetoacetate hydrolase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D Pden_1695 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Pden_4428 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Pden_2618 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Pden_4386 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Pden_3702 glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_1397 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_4462 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_4547 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Pden_3809 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Pden_1664 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Pden_1985 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Pden_0814 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pden_3433 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pden_4597 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Pden_2718 IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Pden_0611 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_0551 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_4760 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Pden_2551 electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit D Pden_1952 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Pden_4305 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:pde02048] D Pden_0261 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Pden_2101 DNA methylase N-4/N-6 domain protein K13581 ccrM; modification methylase [EC:2.1.1.72] D Pden_3838 DNA methylase N-4/N-6 domain protein K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D Pden_3164 DNA methylase N-4/N-6 domain protein K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D Pden_3357 DNA methylase N-4/N-6 domain protein K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D Pden_0120 DNA methylase N-4/N-6 domain protein K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D Pden_2061 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_3372 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_0263 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_3182 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Pden_2060 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D Pden_3591 addiction module antitoxin, RelB/DinJ family K07473 dinJ; DNA-damage-inducible protein J D Pden_1548 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D Pden_3831 plasmid stabilization system K19092 parE1_3_4; toxin ParE1/3/4 D Pden_3065 plasmid stabilization system K19092 parE1_3_4; toxin ParE1/3/4 D Pden_2396 putative transcriptional regulator, CopG/Arc/MetJ family K07746 parD1_3_4; antitoxin ParD1/3/4 D Pden_3830 putative transcriptional regulator, CopG/Arc/MetJ family K07746 parD1_3_4; antitoxin ParD1/3/4 D Pden_0264 conserved hypothetical protein K19166 higB; mRNA interferase HigB [EC:3.1.-.-] D Pden_0265 transcriptional regulator, XRE family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Pden_1963 plasmid maintenance system antidote protein, XRE family K21498 higA-1; antitoxin HigA-1 D Pden_0483 PilT protein domain protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] D Pden_0482 SpoVT/AbrB domain protein K18829 mvpT; antitoxin VapB D Pden_3192 PilT protein domain protein K07062 fitB; toxin FitB [EC:3.1.-.-] D Pden_2075 PilT protein domain protein K07062 fitB; toxin FitB [EC:3.1.-.-] D Pden_3379 PilT protein domain protein K07062 fitB; toxin FitB [EC:3.1.-.-] D Pden_0141 PilT protein-like protein K07062 fitB; toxin FitB [EC:3.1.-.-] D Pden_2074 putative plasmid stability protein K21495 fitA; antitoxin FitA D Pden_3193 putative plasmid stabilization protein K21495 fitA; antitoxin FitA D Pden_4487 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Pden_4032 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Pden_2546 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Pden_1836 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Pden_3717 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pden_0884 glutamate--tRNA(Gln) ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Pden_0937 protein of unknown function DUF339 K09159 cptB; antitoxin CptB D Pden_3963 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels [BR:pde04040] C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:pde04090] C 01504 Antimicrobial resistance genes [BR:pde01504] D Pden_3159 Gentamicin 3'-N-acetyltransferase K03395 aac3-I; aminoglycoside 3-N-acetyltransferase I [EC:2.3.1.60] D Pden_3355 Gentamicin 3'-N-acetyltransferase K03395 aac3-I; aminoglycoside 3-N-acetyltransferase I [EC:2.3.1.60] D Pden_2040 GCN5-related N-acetyltransferase K00663 aacA; aminoglycoside 6'-N-acetyltransferase [EC:2.3.1.82] D Pden_0738 transferase hexapeptide repeat containing protein K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-] D Pden_0116 transferase hexapeptide repeat containing protein K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28] D Pden_2941 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_1780 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_2721 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_3447 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Pden_3448 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pden_2722 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pden_2942 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pden_1781 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Pden_0232 transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D Pden_2727 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:pde00537] D Pden_1105 peptidase M19, renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Pden_1304 dipeptidase AC, Metallo peptidase, MEROPS family M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Pden_1592 dipeptidase AC, Metallo peptidase, MEROPS family M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:pde03100] D Pden_R0024 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pden_R0004 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pden_R0041 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pden_R0048 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Pden_R0015 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pden_R0030 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pden_R0044 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Pden_R0026 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Pden_R0018 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Pden_R0034 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Pden_R0035 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Pden_R0050 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Pden_R0019 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Pden_R0027 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pden_R0033 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Pden_R0012 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pden_R0028 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pden_R0049 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Pden_R0022 tRNA-His K14226 tRNA-His; tRNA His D Pden_R0003 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Pden_R0042 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Pden_R0021 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pden_R0011 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pden_R0046 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pden_R0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Pden_R0009 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Pden_R0016 tRNA-Met K14230 tRNA-Met; tRNA Met D Pden_R0007 tRNA-Met K14230 tRNA-Met; tRNA Met D Pden_R0038 tRNA-Met K14230 tRNA-Met; tRNA Met D Pden_R0047 tRNA-Met K14230 tRNA-Met; tRNA Met D Pden_R0029 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Pden_R0010 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Pden_R0032 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Pden_R0014 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Pden_R0008 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pden_R0020 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pden_R0023 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pden_R0017 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Pden_R0037 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Pden_R0045 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Pden_R0013 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Pden_R0001 tRNA-Val K14237 tRNA-Val; tRNA Val D Pden_R0051 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D Pden_R0002 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pden_R0043 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Pden_R0005 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pden_R0040 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Pden_R0006 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pden_R0039 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Pden_R0031 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Pden_R0055 Bacterial RNase P class A K01978 rnpB; M1 RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D Pden_5073 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein K27497 K27497; carnitine 3-dehydrogenase / betainyl-CoA thioesterase [EC:1.1.1.108 3.1.2.33] D Pden_5063 Alcohol dehydrogenase, zinc-binding domain protein K00098 idnD; L-idonate 5-dehydrogenase [EC:1.1.1.264] D Pden_3579 histidinol dehydrogenase K15509 hpsN; sulfopropanediol 3-dehydrogenase [EC:1.1.1.308] D Pden_1091 histidinol dehydrogenase K15509 hpsN; sulfopropanediol 3-dehydrogenase [EC:1.1.1.308] D Pden_4840 Alcohol dehydrogenase GroES domain protein K21616 znd; D-altritol 5-dehydrogenase [EC:1.1.1.407] D Pden_4985 Pyruvate dehydrogenase (acetyl-transferring) K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-] D Pden_4984 Transketolase, central region K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-] D Pden_2710 glucose sorbosone dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-] D Pden_4727 glucose sorbosone dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-] D Pden_1991 aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] D Pden_4941 Betaine-aldehyde dehydrogenase K23463 tgnC; (Z)-2-((N-methylformamido)methylene)-5-hydroxybutyrolactone dehydrogenase [EC:1.2.1.-] D Pden_2361 coenzyme PQQ biosynthesis protein C K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11] D Pden_1119 reduced coenzyme F420:NADP oxidoreductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D Pden_1197 NADH:flavin oxidoreductase/NADH oxidase K22551 hpbA; N-methyl-L-proline demethylase [EC:1.5.3.-] D Pden_0425 Electron-transferring-flavoprotein dehydrogenase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D Pden_4165 (Acyl-carrier-protein) phosphodiesterase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D Pden_0621 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D Pden_1893 methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D Pden_2264 Glutathione S-transferase, N-terminal domain K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D Pden_1732 putative glutathione S-transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D Pden_1454 glutathione S-transferase-like protein K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D Pden_0063 oxidoreductase, molybdopterin binding protein K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D Pden_0893 Cytochrome-c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D Pden_1377 Redoxin domain protein K24157 prxII; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Pden_2756 1-Cys peroxiredoxin K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Pden_0924 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D Pden_1067 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D Pden_4014 Dyp-type peroxidase family K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D Pden_4677 2OG-Fe(II) oxygenase K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-] D Pden_1689 globin K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D Pden_2832 Rieske (2Fe-2S) domain protein K24003 stc2; stachydrine N-demethylase [EC:1.14.13.247] D Pden_1189 Rieske (2Fe-2S) domain protein K24003 stc2; stachydrine N-demethylase [EC:1.14.13.247] D Pden_5125 putative monooxygenase protein K24116 scmK; N-acetyl-S-(2-succino)cysteine monooxygenase [EC:1.14.-.-] D Pden_0658 Ferredoxin--NADP(+) reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D Pden_0215 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D Pden_2271 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D Pden_3135 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D Pden_3341 arsenate reductase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D Pden_2359 coenzyme PQQ biosynthesis protein E K06139 pqqE; PqqA peptide cyclase [EC:1.21.98.4] D Pden_2987 anaerobic ribonucleoside-triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Pden_2730 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D Pden_2726 protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D Pden_2392 Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D Pden_2378 putative RNA methylase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-] D Pden_1750 transferase hexapeptide repeat containing protein K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D Pden_4507 lyso-ornithine lipid acyltransferase K22617 olsA; lyso-ornithine lipid O-acyltransferase [EC:2.3.1.270] D Pden_5071 protein of unknown function DUF849 K27837 cdhC; 3-dehydrocarnitine:acetyl-CoA trimethylamine transferase [EC:2.3.1.317] D Pden_3578 protein of unknown function DUF849 K27838 E2.3.1.319; 3,5-dioxohexanoate:acetyl-CoA acetone transferase [EC:2.3.1.319] D Pden_4648 protein of unknown function DUF849 K27838 E2.3.1.319; 3,5-dioxohexanoate:acetyl-CoA acetone transferase [EC:2.3.1.319] D Pden_0471 protein of unknown function DUF849 K27838 E2.3.1.319; 3,5-dioxohexanoate:acetyl-CoA acetone transferase [EC:2.3.1.319] D Pden_4531 protein of unknown function DUF849 K27838 E2.3.1.319; 3,5-dioxohexanoate:acetyl-CoA acetone transferase [EC:2.3.1.319] D Pden_3695 GCN5-related N-acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-] D Pden_0122 GCN5-related N-acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-] D Pden_3359 GCN5-related N-acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-] D Pden_1462 GCN5-related N-acetyltransferase K03829 yedL; putative acetyltransferase [EC:2.3.1.-] D Pden_1796 GCN5-related N-acetyltransferase K03829 yedL; putative acetyltransferase [EC:2.3.1.-] D Pden_1243 3-oxoacyl-[acyl-carrier-protein] synthase II K14660 nodE; nodulation protein E [EC:2.3.1.-] D Pden_3680 GCN5-related N-acetyltransferase K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-] D Pden_1270 Leucyltransferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D Pden_2168 Arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D Pden_2213 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Pden_3291 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Pden_2485 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Pden_4214 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Pden_4595 erythritol kinase (L-erythritol 4-phosphate-forming) K00862 eryA; erythritol kinase (D-erythritol 1-phosphate-forming) [EC:2.7.1.215] D Pden_3383 type III effector Hrp-dependent outer K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217] D Pden_2167 (Glutamate--ammonia-ligase) adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D Pden_4539 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Pden_4058 protein of unknown function UPF0061 K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D Pden_3638 Appr-1-p processing domain protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D Pden_0682 4-hydroxybenzoyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Pden_1614 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Pden_0476 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Pden_0881 putative phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D Pden_2286 sulfatase K01133 betC; choline-sulfatase [EC:3.1.6.6] D Pden_2146 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Pden_0918 alpha/beta hydrolase fold protein K01175 ybfF; esterase [EC:3.1.-.-] D Pden_1757 Serine-type D-Ala-D-Ala carboxypeptidase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D Pden_0645 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Pden_0646 Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Pden_0647 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Pden_2587 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D Pden_5116 agmatinase K18459 gpuA; guanidinopropionase [EC:3.5.3.17] D Pden_3916 amidohydrolase K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32] D Pden_3901 ATPase associated with various cellular activities, AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Pden_1125 ATPase associated with various cellular activities, AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Pden_5117 protein of unknown function DUF1234 K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D Pden_1468 protein of unknown function DUF1234 K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D Pden_3382 class II aldolase/adducin family protein K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104] D Pden_3919 D-3-hydroxyaspartate aldolase K18425 dhaa; 3-hydroxy-D-aspartate aldolase [EC:4.1.3.41] D Pden_4928 Galactarate dehydratase K26399 K26399; arabinonate dehydratase [EC:4.2.1.5] D Pden_4671 Altronate dehydratase K26399 K26399; arabinonate dehydratase [EC:4.2.1.5] D Pden_1187 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein K21617 hpbD; 4-hydroxyproline betaine 2-epimerase [EC:5.1.1.22] D Pden_3899 Hydroxypyruvate isomerase K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35] D Pden_5018 Hydroxypyruvate isomerase K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35] D Pden_3230 AMP-dependent synthetase and ligase K25775 casG; steroid-24-oyl-CoA synthetase [EC:6.2.1.-] D Pden_4262 acetone carboxylase, alpha subunit K10854 acxB; acetone carboxylase, alpha subunit [EC:6.4.1.6] D Pden_4263 acetone carboxylase, beta subunit K10855 acxA; acetone carboxylase, beta subunit [EC:6.4.1.6] D Pden_4261 acetone carboxylase, gamma subunit K10856 acxC; acetone carboxylase, gamma subunit [EC:6.4.1.6] D Pden_1842 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D Pden_3295 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D Pden_2344 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D Pden_0212 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism D Pden_1679 Xylose isomerase domain protein TIM barrel K06605 iolH; myo-inositol catabolism protein IolH D Pden_2926 protein of unknown function DUF224, cysteine-rich region domain protein K18928 lldE; L-lactate dehydrogenase complex protein LldE D Pden_2925 iron-sulfur cluster binding protein K18929 lldF; L-lactate dehydrogenase complex protein LldF D Pden_2924 protein of unknown function DUF162 K00782 lldG; L-lactate dehydrogenase complex protein LldG C 99982 Energy metabolism D Pden_2855 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein D Pden_1826 4Fe-4S ferredoxin, iron-sulfur binding domain protein K05524 fdxA; ferredoxin D Pden_2481 von Willebrand factor, type A K02448 norD; nitric oxide reductase NorD protein D Pden_2480 cytochrome c oxidase, subunit III K02164 norE; nitric oxide reductase NorE protein D Pden_2482 ATPase associated with various cellular activities, AAA_5 K04748 norQ; nitric oxide reductase NorQ protein D Pden_4720 periplasmic nitrate reductase chaperone NapD K02570 napD; periplasmic nitrate reductase NapD D Pden_4719 periplasmic nitrate reductase subunit NapE K02571 napE; periplasmic nitrate reductase NapE D Pden_4723 periplasmic nitrate reductase subunit NapC K02569 napC; cytochrome c-type protein NapC D Pden_4737 periplasmic nitrate reductase subunit NapG K02573 napG; ferredoxin-type protein NapG D Pden_4738 periplasmic nitrate reductase subunit NapH K02574 napH; ferredoxin-type protein NapH D Pden_2550 electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit D Pden_2489 cytochrome c (c55X) K19344 nirC; cytochrome c55X D Pden_2490 cytochrome d1, heme region K19345 nirF; protein NirF D Pden_1188 ferredoxin K24004 stc4; stachydrine N-demethylase, reductase component D Pden_2831 ferredoxin K24004 stc4; stachydrine N-demethylase, reductase component D Pden_4734 amicyanin K24619 mauC; amicyanin C 99983 Lipid metabolism D Pden_0948 acyl-CoA dehydrogenase domain protein K09456 aidB; putative acyl-CoA dehydrogenase C 99984 Nucleotide metabolism D Pden_4376 NrdI protein K03647 nrdI; protein involved in ribonucleotide reduction C 99985 Amino acid metabolism D Pden_2176 conserved hypothetical protein K06203 cysZ; CysZ protein D Pden_3585 Ethanolamine utilization protein, EutH K04023 eutH; ethanolamine transporter D Pden_2762 alanine racemase domain protein K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D Pden_2757 glycosyl transferase, family 25 K07270 K07270; glycosyl transferase, family 25 C 99987 Cofactor metabolism D Pden_2531 cobalamin biosynthesis protein CobW K02234 cobW; cobalamin biosynthesis protein CobW D Pden_1995 HemY domain protein K02498 hemY; HemY protein D Pden_2494 Radical SAM domain protein K24868 nirJ; heme d1 biosynthesis protein D Pden_4510 2-octaprenylphenol hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D Pden_4227 conserved hypothetical protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT D Pden_2268 rpsU-divergently transcribed protein K18587 COQ9; ubiquinone biosynthesis protein COQ9 D Pden_3870 cyclase/dehydrase K18588 COQ10; coenzyme Q-binding protein COQ10 C 99988 Secondary metabolism D Pden_4071 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) C 99999 Others D Pden_3501 Glyoxalase/bleomycin resistance protein/dioxygenase K15975 K15975; glyoxalase family protein D Pden_0328 Glyoxalase/bleomycin resistance protein/dioxygenase K15975 K15975; glyoxalase family protein D Pden_4310 DoxX family protein K15977 K15977; putative oxidoreductase D Pden_3509 DoxX family protein K15977 K15977; putative oxidoreductase D Pden_4497 DoxX family protein K15977 K15977; putative oxidoreductase D Pden_3946 phospholipase/Carboxylesterase K06999 K06999; phospholipase/carboxylesterase D Pden_3502 hypothetical protein K06999 K06999; phospholipase/carboxylesterase D Pden_0331 Glyoxalase/bleomycin resistance protein/dioxygenase K06999 K06999; phospholipase/carboxylesterase B B 09192 Unclassified: genetic information processing C 99973 Transcription D Pden_3653 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Pden_0954 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Pden_0859 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Pden_3140 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Pden_3143 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Pden_2065 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Pden_4458 RNA binding S1 domain protein K06959 tex; protein Tex C 99974 Translation D Pden_4686 ABC transporter related protein K13926 rbbA; ribosome-dependent ATPase D Pden_0411 putative exonuclease protein involved in mRNA processing K07577 K07577; putative mRNA 3-end processing factor C 99975 Protein processing D Pden_1756 ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D Pden_0887 trigger factor K03545 tig; trigger factor D Pden_0064 Ferric reductase domain protein transmembrane component, N-terminal domain K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D Pden_2826 formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein D Pden_1207 UreE urease accessory domain protein K03187 ureE; urease accessory protein D Pden_1206 Urease accessory protein UreF K03188 ureF; urease accessory protein D Pden_1205 urease accessory protein UreG K03189 ureG; urease accessory protein D Pden_1212 Urease accessory protein UreD K03190 ureD; urease accessory protein D Pden_5001 HupE/UreJ protein K03192 ureJ; urease accessory protein D Pden_3099 HupE/UreJ protein K03192 ureJ; urease accessory protein D Pden_1210 HupE/UreJ protein K03192 ureJ; urease accessory protein D Pden_0632 SsrA-binding protein K03664 smpB; SsrA-binding protein D Pden_3102 hydrogenase expression/formation protein (HUPF/HYPC) K04653 hypC; hydrogenase expression/formation protein HypC D Pden_3110 hydrogenase assembly chaperone hypC/hupF K04653 hypC; hydrogenase expression/formation protein HypC D Pden_3111 hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD D Pden_3112 hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE D Pden_3096 (NiFe) hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF D Pden_4375 ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit K06191 nrdH; glutaredoxin-like protein NrdH D Pden_3961 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein D Pden_0826 20S proteasome, A and B subunits K07395 K07395; putative proteasome-type protease D Pden_4259 molybdenum cofactor sulfurylase K07402 xdhC; xanthine dehydrogenase accessory factor D Pden_0059 Glutathione S-transferase, N-terminal domain K11208 yncG; GST-like protein C 99976 Replication and repair D Pden_2304 DNA repair protein RadC K03630 radC; DNA repair protein RadC D Pden_1542 DNA repair protein RadC K03630 radC; DNA repair protein RadC D Pden_4070 protein of unknown function DUF195 K09760 rmuC; DNA recombination protein RmuC D Pden_3959 protein of unknown function UPF0102 K07460 yraN; putative endonuclease D Pden_4323 DNA protecting protein DprA K04096 smf; DNA processing protein D Pden_3756 phage terminase, large subunit, PBSX family K06909 xtmB; phage terminase large subunit D Pden_0788 Recombination protein MgsA K07478 ycaJ; putative ATPase D Pden_0983 phage/plasmid primase, P4 family K06919 K06919; putative DNA primase/helicase D Pden_0353 phage/plasmid primase, P4 family K06919 K06919; putative DNA primase/helicase D Pden_3309 transposase IS3/IS911 family protein K07483 K07483; transposase D Pden_1624 transposase IS3/IS911 family protein K07483 K07483; transposase D Pden_3845 transposase IS3/IS911 family protein K07483 K07483; transposase D Pden_3562 transposase IS3/IS911 family protein K07483 K07483; transposase D Pden_1617 transposase IS3/IS911 family protein K07483 K07483; transposase D Pden_3161 transposase IS3/IS911 family protein K07483 K07483; transposase D Pden_3308 IS66 Orf2 family protein K07484 K07484; transposase D Pden_3595 IS66 Orf2 family protein K07484 K07484; transposase D Pden_0068 transposase IS66 K07484 K07484; transposase D Pden_0067 IS66 Orf2 family protein K07484 K07484; transposase D Pden_2417 IS66 Orf2 family protein K07484 K07484; transposase D Pden_0134 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase D Pden_3079 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase C 99979 Viral proteins C 99998 Others D Pden_3648 conserved hypothetical protein 103 K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D Pden_0160 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D Pden_3038 choline/carnitine/betaine transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family D Pden_0665 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D Pden_0634 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D Pden_0662 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Pden_0666 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Pden_1111 NCS1 nucleoside transporter family K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D Pden_4351 permease for cytosine/purines, uracil, thiamine, allantoin K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D Pden_0678 permease for cytosine/purines, uracil, thiamine, allantoin K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family C 99978 Cell growth D Pden_4299 Intracellular septation protein A K06190 ispZ; intracellular septation protein D Pden_3025 protein of unknown function DUF542, ScdA domain protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D Pden_4224 protein of unknown function DUF542, ScdA domain protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D Pden_2507 peptidase M23B K22719 envC; murein hydrolase activator C 99993 Cell motility C 99995 Signaling proteins D Pden_4025 GTP-binding protein TypA K06207 typA; GTP-binding protein D Pden_0317 CBS domain containing protein K07168 K07168; CBS domain-containing membrane protein D Pden_3692 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D Pden_5110 putative signal-transduction protein with CBS domains K07182 K07182; CBS domain-containing protein D Pden_4553 cyclic nucleotide-binding protein K07182 K07182; CBS domain-containing protein C 99992 Structural proteins D Pden_2035 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D Pden_1558 Capsule polysaccharide biosynthesis K07265 kpsS; capsular polysaccharide export protein D Pden_1560 Capsule polysaccharide biosynthesis K07266 kpsC; capsular polysaccharide export protein D Pden_2185 glycoside hydrolase, family 25 K07273 acm; lysozyme D Pden_3636 OmpW family protein K07275 ompW; outer membrane protein D Pden_1551 protein of unknown function DUF481 K07283 ydiY; putative salt-induced outer membrane protein D Pden_5057 secretion protein HlyD family protein K01993 ABC-2.TX; HlyD family secretion protein D Pden_4685 secretion protein HlyD family protein K01993 ABC-2.TX; HlyD family secretion protein D Pden_3301 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein D Pden_3974 CcmE/CycJ protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE D Pden_3978 cytochrome C biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D Pden_0511 putative cytochrome c-type biogenesis protein, CycH K02200 ccmH; cytochrome c-type biogenesis protein CcmH C 99994 Others D Pden_4326 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein D Pden_1314 periplasmic glucan biosynthesis protein, MdoG K03670 mdoG; periplasmic glucans biosynthesis protein D Pden_4350 periplasmic glucan biosynthesis protein, MdoG K03670 mdoG; periplasmic glucans biosynthesis protein D Pden_1583 periplasmic glucan biosynthesis protein, MdoG K03670 mdoG; periplasmic glucans biosynthesis protein D Pden_4778 phosphonate C-P lyase system protein PhnK K05781 phnK; putative phosphonate transport system ATP-binding protein D Pden_4218 periplasmic copper-binding protein K07218 nosD; nitrous oxidase accessory protein D Pden_3457 FAD dependent oxidoreductase K07222 K07222; putative flavoprotein involved in K+ transport D Pden_4202 hemin-degrading family protein K07225 hmuS; putative hemin transport protein D Pden_4230 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO D Pden_4044 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO D Pden_4166 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO D Pden_4215 NosL family protein K19342 nosL; copper chaperone NosL B B 09194 Poorly characterized C 99996 General function prediction only D Pden_3940 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production D Pden_3606 Peptidoglycan-binding domain 1 protein K03791 K03791; putative chitinase D Pden_3780 Peptidoglycan-binding domain 1 protein K03791 K03791; putative chitinase D Pden_2692 Mammalian cell entry related domain protein K06192 pqiB; paraquat-inducible protein B D Pden_2362 coenzyme PQQ biosynthesis protein B K06136 pqqB; pyrroloquinoline quinone biosynthesis protein B D Pden_2360 coenzyme PQQ synthesis D K06138 pqqD; pyrroloquinoline quinone biosynthesis protein D D Pden_2197 export-related chaperone CsaA K06878 K06878; tRNA-binding protein D Pden_3614 conserved hypothetical protein K06886 glbN; hemoglobin D Pden_0721 Patatin K07001 K07001; NTE family protein D Pden_1814 Patatin K07001 K07001; NTE family protein D Pden_4962 HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like) K07025 K07025; putative hydrolase of the HAD superfamily D Pden_3943 pyrimidine 5'-nucleotidase K07025 K07025; putative hydrolase of the HAD superfamily D Pden_3964 Iron-regulated ABC transporter membrane component SufB K09014 sufB; Fe-S cluster assembly protein SufB D Pden_3967 SufBD protein K09015 sufD; Fe-S cluster assembly protein SufD D Pden_2816 putative ribonuclease BN K07058 K07058; membrane protein D Pden_2785 FxsA cytoplasmic membrane protein K07113 fxsA; UPF0716 protein FxsA D Pden_4099 Cysteine desulfuration protein SufE K02426 sufE; cysteine desulfuration protein SufE D Pden_0850 Rhodanese domain protein K07146 K07146; UPF0176 protein D Pden_4515 3-demethylubiquinone-9 3-methyltransferase K04750 phnB; PhnB protein D Pden_3133 NADPH-dependent FMN reductase K11811 arsH; arsenical resistance protein ArsH D Pden_3339 NADPH-dependent FMN reductase K11811 arsH; arsenical resistance protein ArsH D Pden_1926 conserved hypothetical protein K03745 slyX; SlyX protein D Pden_0817 CreA family protein K05805 creA; CreA protein D Pden_2693 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D Pden_2694 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D Pden_0638 conserved hypothetical protein 1620 K08990 ycjF; putative membrane protein D Pden_3104 HupH hydrogenase expression protein K03618 hyaF; hydrogenase-1 operon protein HyaF D Pden_3103 hydrogenase-1 expression HyaE K03619 hyaE; hydrogenase-1 operon protein HyaE D Pden_4739 alkylphosphonate utilization operon protein PhnA K06193 phnA; protein PhnA C 99997 Function unknown D Pden_4250 Ankyrin K06867 K06867; uncharacterized protein D Pden_1704 Radical SAM domain protein K06871 K06871; uncharacterized protein D Pden_4347 Radical SAM domain protein K06871 K06871; uncharacterized protein D Pden_4501 protein of unknown function DUF477 K06872 K06872; uncharacterized protein D Pden_3245 conserved hypothetical protein K06889 K06889; uncharacterized protein D Pden_3004 peptidase S15 K06889 K06889; uncharacterized protein D Pden_1390 protein of unknown function UPF0005 K06890 K06890; uncharacterized protein D Pden_0639 protein of unknown function DUF463, YcjX family protein K06918 K06918; uncharacterized protein D Pden_0910 protein of unknown function DUF815 K06923 K06923; uncharacterized protein D Pden_3824 CoA-binding domain protein K06929 K06929; uncharacterized protein D Pden_0509 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein D Pden_0414 putative metallo-phosphoesterase K06953 K06953; uncharacterized protein D Pden_4249 sodium:dicarboxylate symporter K06956 K06956; uncharacterized protein D Pden_3505 conserved hypothetical protein K06975 K06975; uncharacterized protein D Pden_2744 acetyltransferase-like protein K06975 K06975; uncharacterized protein D Pden_4966 protein of unknown function DUF861, cupin_3 K06995 K06995; uncharacterized protein D Pden_3615 Glyoxalase/bleomycin resistance protein/dioxygenase K06996 K06996; uncharacterized protein D Pden_2328 Glyoxalase/bleomycin resistance protein/dioxygenase K06996 K06996; uncharacterized protein D Pden_2959 conserved hypothetical protein K07018 K07018; uncharacterized protein D Pden_4522 Glyoxalase/bleomycin resistance protein/dioxygenase K07032 K07032; uncharacterized protein D Pden_0115 yecA family protein K07039 K07039; uncharacterized protein D Pden_3868 zinc metallopeptidase putative K07054 K07054; uncharacterized protein D Pden_5017 conserved hypothetical protein K07078 K07078; uncharacterized protein D Pden_0664 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein D Pden_3911 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Pden_0676 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Pden_2841 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Pden_3166 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Pden_2502 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Pden_2732 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Pden_0562 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Pden_4254 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Pden_1465 conserved hypothetical transmembrane protein K07090 K07090; uncharacterized protein D Pden_3474 protein of unknown function DUF839 K07093 K07093; uncharacterized protein D Pden_4703 protein of unknown function DUF395, YeeE/YedE K07112 K07112; uncharacterized protein D Pden_4704 protein of unknown function DUF395, YeeE/YedE K07112 K07112; uncharacterized protein D Pden_4145 protein of unknown function DUF395, YeeE/YedE K07112 K07112; uncharacterized protein D Pden_4953 putative ammonia monooxygenase K07120 K07120; uncharacterized protein D Pden_0324 putative ammonia monooxygenase K07120 K07120; uncharacterized protein D Pden_3833 conserved hypothetical protein K07133 K07133; uncharacterized protein D Pden_2398 conserved hypothetical protein K07133 K07133; uncharacterized protein D Pden_0878 MOSC domain containing protein K07140 K07140; MOSC domain-containing protein D Pden_2370 peptidase S16, lon domain protein K07157 K07157; uncharacterized protein D Pden_0874 protein of unknown function DUF37 K08998 K08998; uncharacterized protein D Pden_0860 protein of unknown function DUF192 K09005 K09005; uncharacterized protein D Pden_2164 GatB/Yqey domain protein K09117 K09117; uncharacterized protein D Pden_2174 protein of unknown function DUF167 K09131 K09131; uncharacterized protein D Pden_3663 protein of unknown function UPF0153 K09160 K09160; uncharacterized protein D Pden_3516 protein of unknown function DUF917 K09703 K09703; uncharacterized protein D Pden_3715 protein of unknown function DUF1284 K09706 K09706; uncharacterized protein D Pden_1915 protein of unknown function DUF188 K09768 K09768; uncharacterized protein D Pden_2000 YCII-related protein K09780 K09780; uncharacterized protein D Pden_2188 protein of unknown function DUF808 K09781 K09781; uncharacterized protein D Pden_0014 protein of unknown function DUF454 K09790 K09790; uncharacterized protein D Pden_1501 protein of unknown function DUF454 K09790 K09790; uncharacterized protein D Pden_2369 protein of unknown function DUF343 K09791 K09791; uncharacterized protein D Pden_3645 protein of unknown function DUF465 K09794 K09794; uncharacterized protein D Pden_0312 protein of unknown function DUF475 K09799 K09799; uncharacterized protein D Pden_2194 protein of unknown function DUF475 K09799 K09799; uncharacterized protein D Pden_1932 protein of unknown function DUF541 K09807 K09807; uncharacterized protein D Pden_2691 protein of unknown function DUF330 K09857 K09857; uncharacterized protein D Pden_1793 protein of unknown function DUF329 K09862 K09862; uncharacterized protein D Pden_2734 protein of unknown function DUF482 K09919 K09919; uncharacterized protein D Pden_2500 conserved hypothetical protein K09921 K09921; uncharacterized protein D Pden_4470 protein of unknown function DUF486 K09922 K09922; uncharacterized protein D Pden_0292 protein of unknown function DUF1006 K09927 K09927; uncharacterized protein D Pden_1399 conserved hypothetical protein K09928 K09928; uncharacterized protein D Pden_3650 conserved hypothetical protein K09956 K09956; uncharacterized protein D Pden_2368 protein of unknown function DUF779 K09959 K09959; uncharacterized protein D Pden_1262 conserved hypothetical protein K09966 K09966; uncharacterized protein D Pden_0573 conserved hypothetical protein K09967 K09967; uncharacterized protein D Pden_3656 GumN family protein K09973 K09973; uncharacterized protein D Pden_0325 protein of unknown function DUF886 K09975 K09975; uncharacterized protein D Pden_1909 protein of unknown function DUF1321 K09985 K09985; uncharacterized protein D Pden_3900 protein of unknown function DUF1285 K09986 K09986; uncharacterized protein D Pden_2258 protein of unknown function DUF1013 K09987 K09987; uncharacterized protein D Pden_3988 VWA containing CoxE family protein K09989 K09989; uncharacterized protein D Pden_2593 protein of unknown function DUF448 K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: December 5, 2024