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Transcription Machinery - Pyricularia grisea
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
E PgNI_04781 DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
E PgNI_02880 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
E PgNI_09768 uncharacterized protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
E PgNI_05613 hypothetical protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
D Pol II specific subunits
E PgNI_03011 uncharacterized protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
E PgNI_08837 uncharacterized protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E PgNI_02479 uncharacterized protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
E PgNI_02480 uncharacterized protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
D Pol I, II, III common subunits
E PgNI_01790 uncharacterized protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E PgNI_09392 uncharacterized protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E PgNI_03275 uncharacterized protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E PgNI_11599 uncharacterized protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E PgNI_04333 uncharacterized protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
E PgNI_04321 uncharacterized protein K03122 TFIIA1; transcription initiation factor TFIIA large subunit
E PgNI_01765 uncharacterized protein K03123 TFIIA2; transcription initiation factor TFIIA small subunit
D TFIIB
D TFIID
E PgNI_04526 uncharacterized protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E PgNI_04353 uncharacterized protein K23358 TAF1; transcription initiation factor TFIID subunit 1, fungi type [EC:2.3.1.48]
E PgNI_00361 uncharacterized protein K03128 TAF2; transcription initiation factor TFIID subunit 2
E PgNI_04177 uncharacterized protein K14650 TAF3; transcription initiation factor TFIID subunit 3
E PgNI_05810 hypothetical protein K03130 TAF5; transcription initiation factor TFIID subunit 5
E PgNI_01447 uncharacterized protein K03131 TAF6; transcription initiation factor TFIID subunit 6
E PgNI_04178 uncharacterized protein K03132 TAF7; transcription initiation factor TFIID subunit 7
E PgNI_04237 uncharacterized protein K03133 TAF9B; transcription initiation factor TFIID subunit 9B
E PgNI_01498 uncharacterized protein K03135 TAF11; transcription initiation factor TFIID subunit 11
E PgNI_08386 uncharacterized protein K03126 TAF12; transcription initiation factor TFIID subunit 12
E PgNI_06973 uncharacterized protein K03127 TAF13; transcription initiation factor TFIID subunit 13
E PgNI_09547 uncharacterized protein K03140 TAF14; transcription initiation factor TFIID/TFIIF subunit
D TFIIE
E PgNI_05989 hypothetical protein K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E PgNI_00926 uncharacterized protein K03137 TFIIE2; transcription initiation factor TFIIE subunit beta
D TFIIF
E PgNI_03660 uncharacterized protein K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha
E PgNI_04708 uncharacterized protein K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
D TFIIH
E PgNI_09737 uncharacterized protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E PgNI_05753 hypothetical protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E PgNI_07060 uncharacterized protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E PgNI_08944 uncharacterized protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E PgNI_00881 uncharacterized protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E PgNI_09671 uncharacterized protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E PgNI_07738 uncharacterized protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E PgNI_00402 uncharacterized protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E PgNI_06699 hypothetical protein K06634 CCNH; cyclin H
C Mediator complex
D Head
E PgNI_06876 uncharacterized protein K15128 MED6; mediator of RNA polymerase II transcription subunit 6
E PgNI_00244 uncharacterized protein K15130 MED8; mediator of RNA polymerase II transcription subunit 8, fungi type
E PgNI_10763 hypothetical protein K15134 SRB4; mediator of RNA polymerase II transcription subunit 17, fungi type
E PgNI_04473 uncharacterized protein K15136 SRB5; mediator of RNA polymerase II transcription subunit 18, fungi type
D Middle
E PgNI_04290 uncharacterized protein K15147 MED5; mediator of RNA polymerase II transcription subunit 5
E PgNI_07931 uncharacterized protein K15148 MED7; mediator of RNA polymerase II transcription subunit 7
E PgNI_09402 uncharacterized protein K15151 MED10; mediator of RNA polymerase II transcription subunit 10
E PgNI_03707 uncharacterized protein K15152 MED21; mediator of RNA polymerase II transcription subunit 21
E PgNI_10273 hypothetical protein K15153 MED31; mediator of RNA polymerase II transcription subunit 31
D Tail
E PgNI_06334 hypothetical protein K15156 MED14; mediator of RNA polymerase II transcription subunit 14
E PgNI_04813 uncharacterized protein K15160 SIN4; mediator of RNA polymerase II transcription subunit 16, fungi type
D CDK-module
E PgNI_00087 uncharacterized protein K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E PgNI_08171 uncharacterized protein K15161 CCNC; cyclin-C
E PgNI_10528 hypothetical protein K15163 SRB8; mediator of RNA polymerase II transcription subunit 12, fungi type
E PgNI_00915 uncharacterized protein K15165 SSN2; mediator of RNA polymerase II transcription subunit 13, fungi type
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
E PgNI_06353 hypothetical protein K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E PgNI_00317 uncharacterized protein K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E PgNI_01570 uncharacterized protein K08874 TRRAP; transformation/transcription domain-associated protein
E PgNI_03727 uncharacterized protein K11313 SUPT3H; transcription initiation protein SPT3
E PgNI_08347 uncharacterized protein K11359 SPT7; transcriptional activator SPT7
E PgNI_11014 hypothetical protein K11360 SPT8; transcriptional activator SPT8
E PgNI_05522 hypothetical protein K11361 SPT20; transcription factor SPT20
E PgNI_03676 uncharacterized protein K11362 HFI1; transcriptional coactivator HFI1/ADA1
E PgNI_01197 uncharacterized protein K11314 TADA2A; transcriptional adapter 2-alpha
E PgNI_04260 uncharacterized protein K11315 TADA3; transcriptional adapter 3
E PgNI_00361 uncharacterized protein K03128 TAF2; transcription initiation factor TFIID subunit 2
E PgNI_05810 hypothetical protein K03130 TAF5; transcription initiation factor TFIID subunit 5
E PgNI_01447 uncharacterized protein K03131 TAF6; transcription initiation factor TFIID subunit 6
E PgNI_04178 uncharacterized protein K03132 TAF7; transcription initiation factor TFIID subunit 7
E PgNI_04237 uncharacterized protein K03133 TAF9B; transcription initiation factor TFIID subunit 9B
E PgNI_08386 uncharacterized protein K03126 TAF12; transcription initiation factor TFIID subunit 12
E PgNI_00090 uncharacterized protein K11364 SGF29; SAGA-associated factor 29
E PgNI_04766 uncharacterized protein K11365 SGF73; SAGA-associated factor 73
E PgNI_04811 uncharacterized protein K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
E PgNI_00497 uncharacterized protein K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E PgNI_00866 uncharacterized protein K12830 SF3B3; splicing factor 3B subunit 3
D BAF/PBAF complex
E PgNI_09931 uncharacterized protein K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E PgNI_03773 uncharacterized protein K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E PgNI_03695 uncharacterized protein K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
D SWI/SNF complex
E PgNI_00742 uncharacterized protein K11771 SWI1; SWI/SNF chromatin-remodeling complex subunit SWI1
E PgNI_09844 uncharacterized protein K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-]
E PgNI_09931 uncharacterized protein K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E PgNI_01828 uncharacterized protein K11768 ARP9; actin-related protein 9
E PgNI_09547 uncharacterized protein K03140 TAF14; transcription initiation factor TFIID/TFIIF subunit
D RSC complex
E PgNI_00491 uncharacterized protein K11756 RSC1_2; chromatin structure-remodeling complex subunit RSC1/2
E PgNI_06512 hypothetical protein K11761 NPL6; chromatin structure-remodeling complex protein RSC7
E PgNI_05646 hypothetical protein K11763 RSC9; chromatin structure-remodeling complex subunit RSC9
E PgNI_01828 uncharacterized protein K11768 ARP9; actin-related protein 9
E PgNI_06438 hypothetical protein K11770 SFH1; chromatin structure-remodeling complex subunit SFH1
E PgNI_09844 uncharacterized protein K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-]
D Others
E PgNI_08513 uncharacterized protein K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
C Other transcription-related factors
D Transcription elongation factors
E PgNI_00398 uncharacterized protein K03145 TFIIS; transcription elongation factor S-II
E PgNI_06026 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E PgNI_03516 uncharacterized protein K15172 SUPT5H; transcription elongation factor SPT5
E PgNI_08491 uncharacterized protein K11292 SUPT6H; transcription elongation factor SPT6
D Transcription termination factor
E PgNI_00216 uncharacterized protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E PgNI_08597 uncharacterized protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E PgNI_03686 uncharacterized protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E PgNI_08639 uncharacterized protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E PgNI_04599 uncharacterized protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E PgNI_11713 uncharacterized protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E PgNI_04985 uncharacterized protein K06100 SYMPK; symplekin
E PgNI_00288 uncharacterized protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E PgNI_08111 uncharacterized protein K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E PgNI_06956 uncharacterized protein K14845 RAI1; RAT1-interacting protein
E PgNI_05955 hypothetical protein K15559 RTT103; regulator of Ty1 transposition protein 103
E PgNI_07619 uncharacterized protein K15560 NRD1; protein NRD1
E PgNI_10593 hypothetical protein K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3]
E PgNI_02482 uncharacterized protein K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
D PAF1 complex
E PgNI_09974 uncharacterized protein K15174 PAF1; RNA polymerase II-associated factor 1
E PgNI_00871 uncharacterized protein K15176 CTR9; RNA polymerase-associated protein CTR9
E PgNI_06289 hypothetical protein K15177 LEO1; RNA polymerase-associated protein LEO1
E PgNI_08290 uncharacterized protein K15178 RTF1; RNA polymerase-associated protein RTF1
D NELF complex
D Super elongation complex (SEC)
E PgNI_04345 uncharacterized protein K15183 ELL; RNA polymerase II elongation factor ELL
D Little elongation complex (LEC)
E PgNI_04345 uncharacterized protein K15183 ELL; RNA polymerase II elongation factor ELL
D Brd4/P-TEFb complex
D BUR kinase complex
E PgNI_06010 hypothetical protein K15562 BUR1; serine/threonine-protein kinase BUR1 [EC:2.7.11.22 2.7.11.23]
E PgNI_04170 uncharacterized protein K15563 BUR2; protein BUR2
D CTDK-I complex
E PgNI_07719 uncharacterized protein K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23]
E PgNI_05897 hypothetical protein K15564 CTK2; CTD kinase subunit beta
E PgNI_09857 uncharacterized protein K15565 CTK3; CTD kinase subunit gamma
D 7SK RNP complex
D DBIRD complex
D Others
E PgNI_01319 uncharacterized protein K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-]
E PgNI_10552 hypothetical protein K21751 DR1; down-regulator of transcription 1
E PgNI_09945 uncharacterized protein K21752 DRAP1; Dr1-associated corepressor
E PgNI_00545 uncharacterized protein K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16]
E PgNI_00352 uncharacterized protein K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E PgNI_10988 hypothetical protein K17498 SPN1; transcription factor SPN1
E PgNI_00737 uncharacterized protein K20826 RPAP1; RNA polymerase II-associated protein 1
E PgNI_06789 uncharacterized protein K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16]
E PgNI_04581 uncharacterized protein K06666 TUP1; general transcriptional corepressor TUP1
E PgNI_09744 uncharacterized protein K06665 SSN6; general transcriptional corepressor CYC8
E PgNI_10607 hypothetical protein K12412 MCM1; pheromone receptor transcription factor
E PgNI_08959 uncharacterized protein K24104 GPN; GPN-loop GTPase
E PgNI_11600 uncharacterized protein K24104 GPN; GPN-loop GTPase
E PgNI_01761 uncharacterized protein K24104 GPN; GPN-loop GTPase
B RNA polymerase III system
C RNA polymerase III
D Core subunits
E PgNI_03051 uncharacterized protein K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
E PgNI_06067 hypothetical protein K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
E PgNI_06251 hypothetical protein K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E PgNI_09935 uncharacterized protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol III specific subunits
E PgNI_09778 uncharacterized protein K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3
E PgNI_06227 hypothetical protein K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4
E PgNI_05078 uncharacterized protein K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6
E PgNI_11122 hypothetical protein K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7
E PgNI_04995 uncharacterized protein K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8
E PgNI_05738 hypothetical protein K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9
E PgNI_10272 hypothetical protein K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11
D Pol I, II, III common subunits
E PgNI_01790 uncharacterized protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E PgNI_09392 uncharacterized protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E PgNI_03275 uncharacterized protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E PgNI_11599 uncharacterized protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E PgNI_04333 uncharacterized protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D TFIIIA
E PgNI_09391 uncharacterized protein K09191 GTF3A; general transcription factor IIIA
D TFIIIB
E PgNI_04526 uncharacterized protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E PgNI_11679 uncharacterized protein K15196 BRF1; transcription factor IIIB 90 kDa subunit
E PgNI_11701 uncharacterized protein K15198 BDP1; transcription factor TFIIIB component B''
D TFIIIC
E PgNI_09932 uncharacterized protein K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E PgNI_06898 uncharacterized protein K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
D TFIIIC, fungi type
E PgNI_06898 uncharacterized protein K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E PgNI_09932 uncharacterized protein K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E PgNI_01228 uncharacterized protein K15205 TFC6; transcription factor C subunit 6
E PgNI_01174 uncharacterized protein K15206 TFC7; transcription factor C subunit 7
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
E PgNI_04281 uncharacterized protein K25817 MAF1; repressor of RNA polymerase III transcription MAF1
B RNA polymerase I system
C RNA polymerase I
D Core subunits
E PgNI_08076 uncharacterized protein K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
E PgNI_03925 uncharacterized protein K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
E PgNI_06251 hypothetical protein K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E PgNI_09935 uncharacterized protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol I specific subunits
E PgNI_09853 uncharacterized protein K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49
E PgNI_00086 uncharacterized protein K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43
E PgNI_02476 uncharacterized protein K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12
D Pol I, II, III common subunits
E PgNI_01790 uncharacterized protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E PgNI_09392 uncharacterized protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E PgNI_03275 uncharacterized protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E PgNI_11599 uncharacterized protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E PgNI_04333 uncharacterized protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D SL1/TIF-1B
E PgNI_04526 uncharacterized protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
C Other transcription-related factors
D UBF
D Transcription initiation factors
E PgNI_03840 uncharacterized protein K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3
E PgNI_01751 uncharacterized protein K15217 RRN5; RNA polymerase I-specific transcription initiation factor RRN5
E PgNI_00201 uncharacterized protein K15218 RRN6; RNA polymerase I-specific transcription initiation factor RRN6
E PgNI_01866 uncharacterized protein K15219 RRN7; RNA polymerase I-specific transcription initiation factor RRN7
E PgNI_01854 uncharacterized protein K15222 RRN11; RNA polymerase I-specific transcription initiation factor RRN11
E PgNI_05231 hypothetical protein K15223 UAF30; upstream activation factor subunit UAF30
D Transcription elongation factors
E PgNI_06026 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E PgNI_03516 uncharacterized protein K15172 SUPT5H; transcription elongation factor SPT5
D NoRC (nucleolar remodeling complex)
E PgNI_08234 uncharacterized protein K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
D CTDK-I complex
E PgNI_07719 uncharacterized protein K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23]
E PgNI_05897 hypothetical protein K15564 CTK2; CTD kinase subunit beta
E PgNI_09857 uncharacterized protein K15565 CTK3; CTD kinase subunit gamma
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
D Sigma factors
C Other transcription-related factors
D RNA polymerase-associated proteins
D Transcription elongation factors
D Transcription termination factor
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
E PgNI_05989 hypothetical protein K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024