+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Puccinia triticina (wheat leaf rust)</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        PtA15_3A501 uncharacterized protein	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        PtA15_16A105 uncharacterized protein	K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22] 
E        PtA15_7A778 uncharacterized protein	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        PtA15_1A385 uncharacterized protein	K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50] 
E        PtA15_6A322 uncharacterized protein	K01098 CET1; polynucleotide 5'-triphosphatase [EC:3.6.1.74] 
D      Cap binding complex
E        PtA15_15A289 uncharacterized protein	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        PtA15_10A583 uncharacterized protein	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        PtA15_3A415 uncharacterized protein	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        PtA15_9A46 uncharacterized protein	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        PtA15_4A440 uncharacterized protein	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        PtA15_5A901 uncharacterized protein	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        PtA15_4A584 uncharacterized protein	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        PtA15_1A285 uncharacterized protein	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        PtA15_10A453 uncharacterized protein	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        PtA15_3A899 uncharacterized protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        PtA15_4A128 uncharacterized protein	K15541 MPE1; protein MPE1 
E        PtA15_7A65 uncharacterized protein	K15542 PFS2; polyadenylation factor subunit 2 
E        PtA15_1A996 uncharacterized protein	K14962 WDR82; COMPASS component SWD2 
E        PtA15_2A897 uncharacterized protein	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        PtA15_4A336 uncharacterized protein	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        PtA15_18A87 uncharacterized protein	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        PtA15_9A85 uncharacterized protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        PtA15_5A543 uncharacterized protein	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        PtA15_2A38 uncharacterized protein	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        PtA15_7A275 uncharacterized protein	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        PtA15_2A342 uncharacterized protein	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        PtA15_1A311 uncharacterized protein	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        PtA15_8A295 uncharacterized protein	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        PtA15_1A285 uncharacterized protein	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        PtA15_10A453 uncharacterized protein	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        PtA15_9A85 uncharacterized protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        PtA15_2A38 uncharacterized protein	K06100 SYMPK; symplekin 
D      DRB sensitivity inducing factor (DSIF) complex
E        PtA15_2A276 uncharacterized protein	K15171 SUPT4H1; transcription elongation factor SPT4 
E        PtA15_4A563 uncharacterized protein	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        PtA15_1A216 uncharacterized protein	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        PtA15_11A183 uncharacterized protein	K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit 
E        PtA15_4A304 uncharacterized protein	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
D      Poly(A) addition factors
E        PtA15_5A68 uncharacterized protein	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        PtA15_6A470 uncharacterized protein	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
C    Other processing factors
D      PtA15_4A562 uncharacterized protein	K13102 KIN; DNA/RNA-binding protein KIN17 
D      PtA15_15A342 uncharacterized protein	K27103 SRRT; serrate RNA effector molecule 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        PtA15_6A125 uncharacterized protein	K12876 RBM8A; RNA-binding protein 8A 
E        PtA15_11A476 uncharacterized protein	K12877 MAGOH; protein mago nashi 
E        PtA15_10A76 uncharacterized protein	K12881 THOC4; THO complex subunit 4 
E        PtA15_10A301 uncharacterized protein	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        PtA15_4A5 uncharacterized protein	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        PtA15_1A954 uncharacterized protein	K25178 CCDC174; coiled-coil domain-containing protein 174 
E        PtA15_6A798 uncharacterized protein	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        PtA15_2A854 uncharacterized protein	K14325 RNPS1; RNA-binding protein with serine-rich domain 1 
E        PtA15_13A199 uncharacterized protein	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
E        PtA15_15A99 uncharacterized protein	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
D      TREX complex
E        PtA15_13A479 uncharacterized protein	K12878 THOC1; THO complex subunit 1 
E        PtA15_18A5 uncharacterized protein	K12879 THOC2; THO complex subunit 2 
E        PtA15_10A293 uncharacterized protein	K12880 THOC3; THO complex subunit 3 
E        PtA15_10A76 uncharacterized protein	K12881 THOC4; THO complex subunit 4 
E        PtA15_1A85 uncharacterized protein	K13174 THOC5; THO complex subunit 5 
D      TREX-2 complex
E        PtA15_6A283 uncharacterized protein	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        PtA15_15A313 uncharacterized protein	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        PtA15_8A587 uncharacterized protein	K16466 CETN3; centrin-3 
D      Nuclear pore complex
E        PtA15_6A239 uncharacterized protein	K09291 TPR; nucleoprotein TPR 
E        PtA15_8A232 uncharacterized protein	K14298 RAE1; mRNA export factor 
E        PtA15_5A74 uncharacterized protein	K14004 SEC13; protein transport protein SEC13 
E        PtA15_14A228 uncharacterized protein	K14304 NUP85; nuclear pore complex protein Nup85 
E        PtA15_9A697 uncharacterized protein	K14308 NUP54; nuclear pore complex protein Nup54 
E        PtA15_1A815 uncharacterized protein	K14306 NUP62; nuclear pore complex protein Nup62 
E        PtA15_13A153 uncharacterized protein	K14309 NUP93; nuclear pore complex protein Nup93 
E        PtA15_2A936 uncharacterized protein	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        PtA15_5A49 uncharacterized protein	K14301 NUP107; nuclear pore complex protein Nup107 
E        PtA15_7A223 uncharacterized protein	K14300 NUP133; nuclear pore complex protein Nup133 
E        PtA15_6A227 uncharacterized protein	K14311 NUP188; nuclear pore complex protein Nup188 
E        PtA15_17A417 uncharacterized protein	K14312 NUP155; nuclear pore complex protein Nup155 
E        PtA15_9A641 uncharacterized protein	K14303 NUP160; nuclear pore complex protein Nup160 
E        PtA15_3A768 uncharacterized protein	K14310 NUP205; nuclear pore complex protein Nup205 
E        PtA15_4A185 uncharacterized protein	K14307 NUPL1; nucleoporin p58/p45 
E        PtA15_7A610 uncharacterized protein	K14315 NDC1; nucleoporin NDC1 
E        PtA15_6A360 uncharacterized protein	K14299 SEH1; nucleoporin SEH1 
E        PtA15_2A257 uncharacterized protein	K18716 NUP42; nucleoporin NUP42 
E        PtA15_1A925 uncharacterized protein	K18719 NUP82; nucleoporin NUP82 
E        PtA15_8A587 uncharacterized protein	K16466 CETN3; centrin-3 
E        PtA15_17A399 uncharacterized protein	K18723 GLE1; nucleoporin GLE1 
E        PtA15_4A508 uncharacterized protein	K14284 NXF; nuclear RNA export factor 
E        PtA15_8A663 uncharacterized protein	K18725 POM152; nucleoporin POM152 
D      Ran-mediated transport factors
E        PtA15_5A280 uncharacterized protein	K07936 RAN; GTP-binding nuclear protein Ran 
E        PtA15_13A329 uncharacterized protein	K18726 FAF2; FAS-associated factor 2 
E        PtA15_6A235 uncharacterized protein	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        PtA15_7A689 uncharacterized protein	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        PtA15_8A667 uncharacterized protein	K14290 XPO1; exportin-1 
E        PtA15_8A734 uncharacterized protein	K14319 RANGAP1; Ran GTPase-activating protein 1 
D      eIF4F and regulatory proteins
E        PtA15_4A416 uncharacterized protein	K03259 EIF4E; translation initiation factor 4E 
E        PtA15_6A529 uncharacterized protein	K03259 EIF4E; translation initiation factor 4E 
E        PtA15_14A369 uncharacterized protein	K03259 EIF4E; translation initiation factor 4E 
E        PtA15_14A370 uncharacterized protein	K03259 EIF4E; translation initiation factor 4E 
E        PtA15_16A102 uncharacterized protein	K03257 EIF4A; translation initiation factor 4A 
E        PtA15_5A689 uncharacterized protein	K03260 EIF4G; translation initiation factor 4G 
E        PtA15_9A62 uncharacterized protein	K03258 EIF4B; translation initiation factor 4B 
E        PtA15_6A111 uncharacterized protein	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        PtA15_17A170 uncharacterized protein	K13126 PABPC; polyadenylate-binding protein 
E        PtA15_3A866 uncharacterized protein	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        PtA15_2A785 uncharacterized protein	K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6] 
E        PtA15_8A264 uncharacterized protein	K07575 MCTS; malignant T-cell-amplified sequence 
E        PtA15_4A719 uncharacterized protein	K24272 DENR; density-regulated protein 
E        PtA15_5A444 uncharacterized protein	K24272 DENR; density-regulated protein 
E        PtA15_6A48 uncharacterized protein	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
D      Other transport factors
E        PtA15_8A452 uncharacterized protein	K14294 WIBG; partner of Y14 and mago 
E        PtA15_2A636 uncharacterized protein	K14411 MSI; RNA-binding protein Musashi 
E        PtA15_16A158 uncharacterized protein	K06965 PELO; protein pelota 
E        PtA15_7A62 uncharacterized protein	K14396 PABPN1; polyadenylate-binding protein 2 
E        PtA15_8A423 uncharacterized protein	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        PtA15_16A168 uncharacterized protein	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        PtA15_3A907 uncharacterized protein	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        PtA15_12A7 uncharacterized protein	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        PtA15_8A45 uncharacterized protein	K11493 RCC1; regulator of chromosome condensation 
E        PtA15_14A141 uncharacterized protein	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        PtA15_10A714 uncharacterized protein	K03265 ETF1; peptide chain release factor subunit 1 
E        PtA15_18A276 uncharacterized protein	K03267 ERF3; peptide chain release factor subunit 3 
E        PtA15_17A60 uncharacterized protein	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        PtA15_1A256 uncharacterized protein	K14327 UPF2; regulator of nonsense transcripts 2 
D      Protein phosphatase 2A
E        PtA15_15A282 uncharacterized protein	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        PtA15_3A825 uncharacterized protein	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        PtA15_3A499 uncharacterized protein	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
D      Other surveillance factors
E        PtA15_10A715 uncharacterized protein	K24887 GTPBP1; GTP-binding protein 1 
C    Factors involved in mRNA localization
D      Cargo complex
E        PtA15_6A835 uncharacterized protein	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        PtA15_15A74 uncharacterized protein	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        PtA15_6A462 uncharacterized protein	K10357 MYO5; myosin V 
D      Factors that have mRNA localization signals
D      Trans-acting binding proteins
E        PtA15_3A7 uncharacterized protein	K03231 EEF1A; elongation factor 1-alpha 
E        PtA15_10A646 uncharacterized protein	K03233 EEF1G; elongation factor 1-gamma 
D      Other mRNA localization factors
E        PtA15_5A504 uncharacterized protein	K18748 SSD1; protein SSD1 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        PtA15_6A745 uncharacterized protein	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        PtA15_9A510 uncharacterized protein	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        PtA15_6A259 uncharacterized protein	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        PtA15_13A6 uncharacterized protein	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        PtA15_4A416 uncharacterized protein	K03259 EIF4E; translation initiation factor 4E 
E        PtA15_6A529 uncharacterized protein	K03259 EIF4E; translation initiation factor 4E 
E        PtA15_14A369 uncharacterized protein	K03259 EIF4E; translation initiation factor 4E 
E        PtA15_14A370 uncharacterized protein	K03259 EIF4E; translation initiation factor 4E 
E        PtA15_17A60 uncharacterized protein	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        PtA15_6A111 uncharacterized protein	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        PtA15_2A731 uncharacterized protein	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        PtA15_6A778 uncharacterized protein	K18749 LSM14; protein LSM14 
E        PtA15_5A635 uncharacterized protein	K18752 TNPO1; transportin-1 
E        PtA15_4A202 uncharacterized protein	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        PtA15_16A392 uncharacterized protein	K04345 PKA; protein kinase A [EC:2.7.11.11] 
D      P-body specific factors
E        PtA15_1A966 uncharacterized protein	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        PtA15_3A214 uncharacterized protein	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        PtA15_7A521 uncharacterized protein	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        PtA15_8A619 uncharacterized protein	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        PtA15_2A175 uncharacterized protein	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        PtA15_16A394 uncharacterized protein	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        PtA15_14A308 uncharacterized protein	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        PtA15_1A167 uncharacterized protein	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        PtA15_12A311 uncharacterized protein	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        PtA15_6A462 uncharacterized protein	K10357 MYO5; myosin V 
E        PtA15_10A137 uncharacterized protein	K07374 TUBA; tubulin alpha 
E        PtA15_10A618 uncharacterized protein	K07374 TUBA; tubulin alpha 
E        PtA15_16A40 uncharacterized protein	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        PtA15_1A486 uncharacterized protein	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        PtA15_18A104 uncharacterized protein	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        PtA15_2A567 uncharacterized protein	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        PtA15_5A825 uncharacterized protein	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        PtA15_9A606 uncharacterized protein	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        PtA15_11A520 uncharacterized protein	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        PtA15_9A287 uncharacterized protein	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        PtA15_1A256 uncharacterized protein	K14327 UPF2; regulator of nonsense transcripts 2 
E        PtA15_4A43 uncharacterized protein	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
D      Stress granule specific factors
E        PtA15_7A600 uncharacterized protein	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        PtA15_17A170 uncharacterized protein	K13126 PABPC; polyadenylate-binding protein 
E        PtA15_2A515 uncharacterized protein	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        PtA15_5A712 uncharacterized protein	K15026 EIF2A; translation initiation factor 2A 
E        PtA15_3A196 uncharacterized protein	K03253 EIF3B; translation initiation factor 3 subunit B 
E        PtA15_18A265 uncharacterized protein	K03253 EIF3B; translation initiation factor 3 subunit B 
E        PtA15_16A102 uncharacterized protein	K03257 EIF4A; translation initiation factor 4A 
E        PtA15_4A5 uncharacterized protein	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        PtA15_9A62 uncharacterized protein	K03258 EIF4B; translation initiation factor 4B 
E        PtA15_5A689 uncharacterized protein	K03260 EIF4G; translation initiation factor 4G 
E        PtA15_7A423 uncharacterized protein	K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
E        PtA15_8A485 uncharacterized protein	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        PtA15_4A508 uncharacterized protein	K14284 NXF; nuclear RNA export factor 
E        PtA15_8A138 uncharacterized protein	K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        PtA15_1A966 uncharacterized protein	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        PtA15_2A731 uncharacterized protein	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        PtA15_9A287 uncharacterized protein	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        PtA15_3A214 uncharacterized protein	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        PtA15_7A521 uncharacterized protein	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        PtA15_8A619 uncharacterized protein	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        PtA15_2A175 uncharacterized protein	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        PtA15_16A394 uncharacterized protein	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        PtA15_14A308 uncharacterized protein	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        PtA15_1A167 uncharacterized protein	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        PtA15_12A311 uncharacterized protein	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
D      5' exonucleases
E        PtA15_6A745 uncharacterized protein	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        PtA15_9A510 uncharacterized protein	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        PtA15_15A64 uncharacterized protein	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
E        PtA15_16A121 uncharacterized protein	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
C    3'-5' decay
D      Core exosome factors
E        PtA15_3A171 uncharacterized protein	K07573 CSL4; exosome complex component CSL4 
E        PtA15_14A425 uncharacterized protein	K03679 RRP4; exosome complex component RRP4 
E        PtA15_11A638 uncharacterized protein	K03681 RRP40; exosome complex component RRP40 
E        PtA15_8A564 uncharacterized protein	K11600 RRP41; exosome complex component RRP41 
E        PtA15_13A66 uncharacterized protein	K12590 RRP46; exosome complex component RRP46 
E        PtA15_14A194 uncharacterized protein	K12587 MTR3; exosome complex component MTR3 
E        PtA15_13A154 uncharacterized protein	K12589 RRP42; exosome complex component RRP42 
E        PtA15_16A294 uncharacterized protein	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        PtA15_1A67 uncharacterized protein	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
D      TRAMP complex
E        PtA15_14A68 uncharacterized protein	K12597 AIR1_2; protein AIR1/2 
E        PtA15_13A18 uncharacterized protein	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        PtA15_3A866 uncharacterized protein	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        PtA15_14A58 uncharacterized protein	K12600 SKI3; superkiller protein 3 
D      Ccr4-NOT complex
E        PtA15_2A567 uncharacterized protein	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        PtA15_16A40 uncharacterized protein	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        PtA15_1A486 uncharacterized protein	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        PtA15_18A104 uncharacterized protein	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        PtA15_5A825 uncharacterized protein	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        PtA15_2A549 uncharacterized protein	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        PtA15_11A72 uncharacterized protein	K12608 CAF16; CCR4-NOT complex subunit CAF16 
D      Pan complex
E        PtA15_9A606 uncharacterized protein	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        PtA15_11A520 uncharacterized protein	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
D      Other 3'-5' decay factors
E        PtA15_16A59 uncharacterized protein	K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-] 
E        PtA15_16A121 uncharacterized protein	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        PtA15_3A811 uncharacterized protein	K26109 NRDE2; nuclear exosome regulator NRDE2 
E        PtA15_2A929 uncharacterized protein	K27407 VTS1; RNA-binding protein VTS1 
E        PtA15_2A930 uncharacterized protein	K27407 VTS1; RNA-binding protein VTS1 
C    Other degradation factors
D      RNases
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        PtA15_5A694 uncharacterized protein	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
D      Other RNA degradosome components
E        PtA15_8A535 uncharacterized protein	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        PtA15_15A22 uncharacterized protein	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        PtA15_10A665 uncharacterized protein	K04043 dnaK; molecular chaperone DnaK 
E        PtA15_4A487 uncharacterized protein	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        PtA15_14A425 uncharacterized protein	K03679 RRP4; exosome complex component RRP4 
E        PtA15_3A171 uncharacterized protein	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        PtA15_8A564 uncharacterized protein	K11600 RRP41; exosome complex component RRP41 
E        PtA15_13A154 uncharacterized protein	K12589 RRP42; exosome complex component RRP42 
D      Others
!
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#Last updated: April 25, 2024