+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Tremella mesenterica
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E TREMEDRAFT_71716 hypothetical protein K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E TREMEDRAFT_44265 hypothetical protein K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22]
E TREMEDRAFT_33381 hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E TREMEDRAFT_62350 hypothetical protein K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50]
E TREMEDRAFT_31680 hypothetical protein K01098 CET1; polynucleotide 5'-triphosphatase [EC:3.6.1.74]
D Cap binding complex
E TREMEDRAFT_43823 hypothetical protein K12882 NCBP1; nuclear cap-binding protein subunit 1
E TREMEDRAFT_18663 hypothetical protein K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E TREMEDRAFT_63582 hypothetical protein K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
D Pre-mRNA cleavage factor IIm (CFIIm)
E TREMEDRAFT_45306 hypothetical protein K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E TREMEDRAFT_13756 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E TREMEDRAFT_70300 hypothetical protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E TREMEDRAFT_67471 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E TREMEDRAFT_44189 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E TREMEDRAFT_73988 hypothetical protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E TREMEDRAFT_68721 hypothetical protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E TREMEDRAFT_58484 hypothetical protein K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E TREMEDRAFT_67411 hypothetical protein K15541 MPE1; protein MPE1
E TREMEDRAFT_31214 hypothetical protein K15542 PFS2; polyadenylation factor subunit 2
E TREMEDRAFT_58881 hypothetical protein K14962 WDR82; COMPASS component SWD2
E TREMEDRAFT_73911 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E TREMEDRAFT_30754 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E TREMEDRAFT_26308 hypothetical protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E TREMEDRAFT_71583 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E TREMEDRAFT_73949 hypothetical protein K14408 CSTF3; cleavage stimulation factor subunit 3
E TREMEDRAFT_74647 hypothetical protein K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E TREMEDRAFT_27133 hypothetical protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E TREMEDRAFT_38820 hypothetical protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
E TREMEDRAFT_69713 hypothetical protein K11097 SNRPE; small nuclear ribonucleoprotein E
E TREMEDRAFT_67422 hypothetical protein K11098 SNRPF; small nuclear ribonucleoprotein F
E TREMEDRAFT_67521 hypothetical protein K11099 SNRPG; small nuclear ribonucleoprotein G
E TREMEDRAFT_67471 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E TREMEDRAFT_44189 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E TREMEDRAFT_71583 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E TREMEDRAFT_74647 hypothetical protein K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E TREMEDRAFT_26002 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E TREMEDRAFT_71529 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E TREMEDRAFT_74548 hypothetical protein K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E TREMEDRAFT_45948 hypothetical protein K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E TREMEDRAFT_30662 hypothetical protein K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
D Poly(A) addition factors
E TREMEDRAFT_67196 hypothetical protein K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
E TREMEDRAFT_70953 hypothetical protein K13192 RBM26; RNA-binding protein 26
C Other processing factors
D TREMEDRAFT_28285 hypothetical protein K13102 KIN; DNA/RNA-binding protein KIN17
D TREMEDRAFT_73061 hypothetical protein K27103 SRRT; serrate RNA effector molecule
D TREMEDRAFT_60895 hypothetical protein K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E TREMEDRAFT_25312 hypothetical protein K12876 RBM8A; RNA-binding protein 8A
E TREMEDRAFT_31776 hypothetical protein K12877 MAGOH; protein mago nashi
E TREMEDRAFT_66724 hypothetical protein K12881 THOC4; THO complex subunit 4
E TREMEDRAFT_57251 hypothetical protein K12881 THOC4; THO complex subunit 4
E TREMEDRAFT_73647 hypothetical protein K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E TREMEDRAFT_57751 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E TREMEDRAFT_67635 hypothetical protein K14324 SAP18; histone deacetylase complex subunit SAP18
E TREMEDRAFT_72897 hypothetical protein K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E TREMEDRAFT_73795 hypothetical protein K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E TREMEDRAFT_28261 hypothetical protein K12878 THOC1; THO complex subunit 1
E TREMEDRAFT_29485 hypothetical protein K12879 THOC2; THO complex subunit 2
E TREMEDRAFT_66724 hypothetical protein K12881 THOC4; THO complex subunit 4
E TREMEDRAFT_57251 hypothetical protein K12881 THOC4; THO complex subunit 4
E TREMEDRAFT_70597 hypothetical protein K13174 THOC5; THO complex subunit 5
D TREX-2 complex
E TREMEDRAFT_19299 hypothetical protein K16466 CETN3; centrin-3
E TREMEDRAFT_64621 hypothetical protein K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E TREMEDRAFT_64341 hypothetical protein K09291 TPR; nucleoprotein TPR
E TREMEDRAFT_41427 hypothetical protein K14004 SEC13; protein transport protein SEC13
E TREMEDRAFT_70200 hypothetical protein K14304 NUP85; nuclear pore complex protein Nup85
E TREMEDRAFT_60183 hypothetical protein K14308 NUP54; nuclear pore complex protein Nup54
E TREMEDRAFT_70789 hypothetical protein K14309 NUP93; nuclear pore complex protein Nup93
E TREMEDRAFT_62352 hypothetical protein K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E TREMEDRAFT_66694 hypothetical protein K14301 NUP107; nuclear pore complex protein Nup107
E TREMEDRAFT_74725 hypothetical protein K14300 NUP133; nuclear pore complex protein Nup133
E TREMEDRAFT_74637 hypothetical protein K14311 NUP188; nuclear pore complex protein Nup188
E TREMEDRAFT_63207 hypothetical protein K14312 NUP155; nuclear pore complex protein Nup155
E TREMEDRAFT_42231 hypothetical protein K14310 NUP205; nuclear pore complex protein Nup205
E TREMEDRAFT_70863 hypothetical protein K14307 NUPL1; nucleoporin p58/p45
E TREMEDRAFT_59795 hypothetical protein K14315 NDC1; nucleoporin NDC1
E TREMEDRAFT_43841 hypothetical protein K14299 SEH1; nucleoporin SEH1
E TREMEDRAFT_74106 hypothetical protein K18715 NUP159; nucleoporin NUP159
E TREMEDRAFT_73071 hypothetical protein K18716 NUP42; nucleoporin NUP42
E TREMEDRAFT_71225 hypothetical protein K18719 NUP82; nucleoporin NUP82
E TREMEDRAFT_19299 hypothetical protein K16466 CETN3; centrin-3
E TREMEDRAFT_60073 hypothetical protein K18723 GLE1; nucleoporin GLE1
E TREMEDRAFT_36536 hypothetical protein K14284 NXF; nuclear RNA export factor
E TREMEDRAFT_67132 hypothetical protein K14285 NXT1_2; NTF2-related export protein 1/2
E TREMEDRAFT_71756 hypothetical protein K18725 POM152; nucleoporin POM152
D Ran-mediated transport factors
E TREMEDRAFT_37881 hypothetical protein K07936 RAN; GTP-binding nuclear protein Ran
E TREMEDRAFT_35909 hypothetical protein K18726 FAF2; FAS-associated factor 2
E TREMEDRAFT_42539 hypothetical protein K13525 VCP; transitional endoplasmic reticulum ATPase
E TREMEDRAFT_18678 hypothetical protein K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E TREMEDRAFT_74259 hypothetical protein K14290 XPO1; exportin-1
E TREMEDRAFT_26727 hypothetical protein K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E TREMEDRAFT_44880 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E TREMEDRAFT_70424 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E TREMEDRAFT_36289 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E TREMEDRAFT_38632 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E TREMEDRAFT_38178 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E TREMEDRAFT_74367 hypothetical protein K03258 EIF4B; translation initiation factor 4B
E TREMEDRAFT_43516 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E TREMEDRAFT_74865 hypothetical protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E TREMEDRAFT_40410 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E TREMEDRAFT_30506 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E TREMEDRAFT_27449 hypothetical protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E TREMEDRAFT_70643 hypothetical protein K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6]
E TREMEDRAFT_44990 hypothetical protein K07575 MCTS; malignant T-cell-amplified sequence
E TREMEDRAFT_24355 hypothetical protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E TREMEDRAFT_74585 hypothetical protein K14294 WIBG; partner of Y14 and mago
E TREMEDRAFT_56482 hypothetical protein K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E TREMEDRAFT_74094 hypothetical protein K14411 MSI; RNA-binding protein Musashi
E TREMEDRAFT_71549 hypothetical protein K14416 HBS1; elongation factor 1 alpha-like protein
E TREMEDRAFT_70401 hypothetical protein K06965 PELO; protein pelota
E TREMEDRAFT_43661 hypothetical protein K14396 PABPN1; polyadenylate-binding protein 2
E TREMEDRAFT_72673 hypothetical protein K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E TREMEDRAFT_43021 hypothetical protein K12867 SYF1; pre-mRNA-splicing factor SYF1
E TREMEDRAFT_58386 hypothetical protein K18732 SARNP; SAP domain-containing ribonucleoprotein
E TREMEDRAFT_32149 hypothetical protein K11493 RCC1; regulator of chromosome condensation
E TREMEDRAFT_33569 hypothetical protein K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E TREMEDRAFT_67027 hypothetical protein K03265 ETF1; peptide chain release factor subunit 1
E TREMEDRAFT_74837 hypothetical protein K03267 ERF3; peptide chain release factor subunit 3
E TREMEDRAFT_35522 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E TREMEDRAFT_60453 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E TREMEDRAFT_74197 hypothetical protein K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E TREMEDRAFT_41828 hypothetical protein K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E TREMEDRAFT_46114 hypothetical protein K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E TREMEDRAFT_74766 hypothetical protein K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E TREMEDRAFT_74865 hypothetical protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E TREMEDRAFT_68532 hypothetical protein K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E TREMEDRAFT_73909 hypothetical protein K14844 PUF6; pumilio homology domain family member 6
E TREMEDRAFT_65168 hypothetical protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E TREMEDRAFT_42752 hypothetical protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E TREMEDRAFT_63174 hypothetical protein K10357 MYO5; myosin V
E TREMEDRAFT_66517 hypothetical protein K10357 MYO5; myosin V
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E TREMEDRAFT_66877 translation elongation factor 2 K03231 EEF1A; elongation factor 1-alpha
E TREMEDRAFT_56155 hypothetical protein K03233 EEF1G; elongation factor 1-gamma
D Other mRNA localization factors
E TREMEDRAFT_32205 hypothetical protein K18748 SSD1; protein SSD1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E TREMEDRAFT_12051 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E TREMEDRAFT_42693 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E TREMEDRAFT_44880 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E TREMEDRAFT_70424 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E TREMEDRAFT_36289 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E TREMEDRAFT_43516 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E TREMEDRAFT_44243 hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E TREMEDRAFT_73067 hypothetical protein K18749 LSM14; protein LSM14
E TREMEDRAFT_71251 hypothetical protein K18752 TNPO1; transportin-1
E TREMEDRAFT_56482 hypothetical protein K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E TREMEDRAFT_13278 hypothetical protein K04345 PKA; protein kinase A [EC:2.7.11.11]
E TREMEDRAFT_73469 hypothetical protein K04345 PKA; protein kinase A [EC:2.7.11.11]
E TREMEDRAFT_73252 hypothetical protein K18757 LARP1; la-related protein 1
D P-body specific factors
E TREMEDRAFT_60273 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E TREMEDRAFT_31143 hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E TREMEDRAFT_68409 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E TREMEDRAFT_24586 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E TREMEDRAFT_29158 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E TREMEDRAFT_20231 hypothetical protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E TREMEDRAFT_24108 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E TREMEDRAFT_39244 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E TREMEDRAFT_63174 hypothetical protein K10357 MYO5; myosin V
E TREMEDRAFT_66517 hypothetical protein K10357 MYO5; myosin V
E TREMEDRAFT_44001 hypothetical protein K07374 TUBA; tubulin alpha
E TREMEDRAFT_72862 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E TREMEDRAFT_36926 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E TREMEDRAFT_69905 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E TREMEDRAFT_56900 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E TREMEDRAFT_41543 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E TREMEDRAFT_65998 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E TREMEDRAFT_31884 hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E TREMEDRAFT_37565 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E TREMEDRAFT_71451 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E TREMEDRAFT_35522 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E TREMEDRAFT_60453 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3
E TREMEDRAFT_71846 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
D Stress granule specific factors
E TREMEDRAFT_71869 hypothetical protein K13201 TIA1; nucleolysin TIA-1/TIAR
E TREMEDRAFT_40410 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E TREMEDRAFT_30506 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E TREMEDRAFT_73929 hypothetical protein K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E TREMEDRAFT_45646 hypothetical protein K15026 EIF2A; translation initiation factor 2A
E TREMEDRAFT_71889 hypothetical protein K03253 EIF3B; translation initiation factor 3 subunit B
E TREMEDRAFT_38632 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E TREMEDRAFT_57751 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E TREMEDRAFT_74367 hypothetical protein K03258 EIF4B; translation initiation factor 4B
E TREMEDRAFT_38178 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E TREMEDRAFT_45853 hypothetical protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E TREMEDRAFT_36536 hypothetical protein K14284 NXF; nuclear RNA export factor
E TREMEDRAFT_34982 hypothetical protein K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E TREMEDRAFT_44243 hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E TREMEDRAFT_71451 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E TREMEDRAFT_60273 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E TREMEDRAFT_31143 hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E TREMEDRAFT_68409 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E TREMEDRAFT_24586 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E TREMEDRAFT_29158 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E TREMEDRAFT_20231 hypothetical protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E TREMEDRAFT_24108 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E TREMEDRAFT_39244 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
D Other 5'-3' decay factors
E TREMEDRAFT_33242 hypothetical protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
C 3'-5' decay
D Core exosome factors
E TREMEDRAFT_45342 hypothetical protein K07573 CSL4; exosome complex component CSL4
E TREMEDRAFT_28582 hypothetical protein K03679 RRP4; exosome complex component RRP4
E TREMEDRAFT_67481 hypothetical protein K03681 RRP40; exosome complex component RRP40
E TREMEDRAFT_31716 hypothetical protein K11600 RRP41; exosome complex component RRP41
E TREMEDRAFT_31912 hypothetical protein K12590 RRP46; exosome complex component RRP46
E TREMEDRAFT_27507 hypothetical protein K12587 MTR3; exosome complex component MTR3
E TREMEDRAFT_70445 hypothetical protein K12589 RRP42; exosome complex component RRP42
E TREMEDRAFT_23063 hypothetical protein K12586 RRP43; exosome complex component RRP43
E TREMEDRAFT_70580 hypothetical protein K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E TREMEDRAFT_70822 hypothetical protein K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E TREMEDRAFT_61259 hypothetical protein K12592 C1D; exosome complex protein LRP1
D TRAMP complex
E TREMEDRAFT_22292 hypothetical protein K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E TREMEDRAFT_61226 hypothetical protein K12597 AIR1_2; protein AIR1/2
E TREMEDRAFT_63092 hypothetical protein K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E TREMEDRAFT_27449 hypothetical protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E TREMEDRAFT_71017 hypothetical protein K12600 SKI3; superkiller protein 3
D Ccr4-NOT complex
E TREMEDRAFT_41543 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E TREMEDRAFT_72862 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E TREMEDRAFT_36926 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E TREMEDRAFT_69905 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E TREMEDRAFT_56900 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E TREMEDRAFT_65998 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E TREMEDRAFT_45875 hypothetical protein K12606 RCD1; CCR4-NOT transcription complex subunit 9
E TREMEDRAFT_69861 hypothetical protein K12608 CAF16; CCR4-NOT complex subunit CAF16
D Pan complex
E TREMEDRAFT_31884 hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E TREMEDRAFT_37565 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E TREMEDRAFT_33242 hypothetical protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E TREMEDRAFT_26535 hypothetical protein K26109 NRDE2; nuclear exosome regulator NRDE2
E TREMEDRAFT_36653 hypothetical protein K27407 VTS1; RNA-binding protein VTS1
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E TREMEDRAFT_59450 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
E TREMEDRAFT_72276 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
E TREMEDRAFT_29140 hypothetical protein K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E TREMEDRAFT_37142 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E TREMEDRAFT_37662 hypothetical protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E TREMEDRAFT_71306 hypothetical protein K04043 dnaK; molecular chaperone DnaK
E TREMEDRAFT_39009 hypothetical protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E TREMEDRAFT_28582 hypothetical protein K03679 RRP4; exosome complex component RRP4
E TREMEDRAFT_45342 hypothetical protein K07573 CSL4; exosome complex component CSL4
D Cofactors
E TREMEDRAFT_31716 hypothetical protein K11600 RRP41; exosome complex component RRP41
E TREMEDRAFT_70445 hypothetical protein K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024