09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:apw03030]
APA42C_08710 DNA polymerase III exonuclease epsilon subunit APA42C_20312 DNA polymerase III exonuclease epsilon subunit like protein APA42C_19490 DNA polymerase III alpha subunit APA42C_00520 DNA polymerase III gamma/tau subunit APA42C_11460 dnaC; DNA polymerase III delta prime subunit DnaC APA42C_25500 DNA polymerase III delta subunit APA42C_07220 holC; DNA polymerase III chi subunit HolC APA42C_12310 DNA polymerase III beta subunit APA42C_06910 dnaB; DNA helicase DnaB APA42C_09900 DNA primase APA42C_25720 ssb; single-strand DNA binding protein Ssb APA42C_19750 ribonuclease H APA42C_09680 ribonuclease HII APA42C_21430 DNA polymerase I APA42C_19090 DNA ligase
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] K02316 dnaG; DNA primase [EC:2.7.7.101] K03111 ssb; single-strand DNA-binding protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] K03470 rnhB; ribonuclease HII [EC:3.1.26.4] K02335 polA; DNA polymerase I [EC:2.7.7.7] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
03410 Base excision repair [PATH:apw03410]
03420 Nucleotide excision repair [PATH:apw03420]
03430 Mismatch repair [PATH:apw03430]
APA42C_16730 mutS; DNA mismatch repair protein MutS APA42C_07410 mutL; DNA mismatch repair protein MutL APA42C_10450 uvrD_rep; DNA helicase II UvrD/Rep APA42C_00200 exodeoxyribonuclease VII large subunit APA42C_14920 exodeoxyribonuclease VII small subunit APA42C_21360 recJ; single-stranded-DNA-specific exonuclease RecJ APA42C_25720 ssb; single-strand DNA binding protein Ssb APA42C_19490 DNA polymerase III alpha subunit APA42C_12310 DNA polymerase III beta subunit APA42C_00520 DNA polymerase III gamma/tau subunit APA42C_25500 DNA polymerase III delta subunit APA42C_11460 dnaC; DNA polymerase III delta prime subunit DnaC APA42C_08710 DNA polymerase III exonuclease epsilon subunit APA42C_20312 DNA polymerase III exonuclease epsilon subunit like protein APA42C_07220 holC; DNA polymerase III chi subunit HolC APA42C_19090 DNA ligase
K03555 mutS; DNA mismatch repair protein MutS K03572 mutL; DNA mismatch repair protein MutL K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K03111 ssb; single-strand DNA-binding protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
03440 Homologous recombination [PATH:apw03440]
APA42C_21360 recJ; single-stranded-DNA-specific exonuclease RecJ APA42C_25720 ssb; single-strand DNA binding protein Ssb APA42C_12300 recF; DNA replication and repair protein RecF APA42C_19410 recO; DNA repair protein RecO APA42C_00540 recR; DNA recombinase RecR APA42C_00440 recA; DNA recombinase RecA APA42C_21430 DNA polymerase I APA42C_26260 ruvA; Holliday junction resolvase RusA APA42C_26250 ruvB; Holliday junction DNA helicase RuvB APA42C_26270 ruvC; Holliday junction resolvase RuvC APA42C_11040 recG; DNA helicase RecG APA42C_41760 recD_traA; DNA helicase RecD/TraA APA42C_19490 DNA polymerase III alpha subunit APA42C_12310 DNA polymerase III beta subunit APA42C_00520 DNA polymerase III gamma/tau subunit APA42C_25500 DNA polymerase III delta subunit APA42C_11460 dnaC; DNA polymerase III delta prime subunit DnaC APA42C_08710 DNA polymerase III exonuclease epsilon subunit APA42C_20312 DNA polymerase III exonuclease epsilon subunit like protein APA42C_07220 holC; DNA polymerase III chi subunit HolC APA42C_18330 primosomal protein N'
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K03111 ssb; single-strand DNA-binding protein K03629 recF; DNA replication and repair protein RecF K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03553 recA; recombination protein RecA K02335 polA; DNA polymerase I [EC:2.7.7.7] K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
03450 Non-homologous end-joining
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:apw03000]
03021 Transcription machinery [BR:apw03021]
03019 Messenger RNA biogenesis [BR:apw03019]
03041 Spliceosome
03011 Ribosome [BR:apw03011]
03009 Ribosome biogenesis [BR:apw03009]
03016 Transfer RNA biogenesis [BR:apw03016]
03012 Translation factors [BR:apw03012]
03110 Chaperones and folding catalysts [BR:apw03110]
04131 Membrane trafficking [BR:apw04131]
04121 Ubiquitin system [BR:apw04121]
03051 Proteasome [BR:apw03051]
03032 DNA replication proteins [BR:apw03032]
APA42C_19750 ribonuclease H APA42C_40350 hu; histone-like bacterial DNA-binding protein HU APA42C_26450 hu; histone-like bacterial DNA-binding protein HU APA42C_41420 hu; histone-like bacterial DNA-binding protein HU APA42C_16460 hu; histone-like bacterial DNA-binding protein HU APA42C_16990 integration host factor DNA-binding alpha subunit APA42C_16930 integration host factor DNA-binding beta subunit APA42C_12320 dnaA; chromosomal replication initiator protein DnaA APA42C_06910 dnaB; DNA helicase DnaB APA42C_09900 DNA primase APA42C_40640 repC; replication protein C APA42C_25720 ssb; single-strand DNA binding protein Ssb APA42C_19490 DNA polymerase III alpha subunit APA42C_12310 DNA polymerase III beta subunit APA42C_07220 holC; DNA polymerase III chi subunit HolC APA42C_25500 DNA polymerase III delta subunit APA42C_11460 dnaC; DNA polymerase III delta prime subunit DnaC APA42C_08710 DNA polymerase III exonuclease epsilon subunit APA42C_20312 DNA polymerase III exonuclease epsilon subunit like protein APA42C_00520 DNA polymerase III gamma/tau subunit APA42C_09680 ribonuclease HII APA42C_21430 DNA polymerase I APA42C_19090 DNA ligase APA42C_24320 DNA gyrase subunit A APA42C_12290 DNA gyrase subunit B Hsp90-like ATPase APA42C_19400 DNA topoisomerase IV subunit A APA42C_07440 DNA topoisomerase IV subunit B APA42C_07530 DNA topoisomerase I
K03469 rnhA; ribonuclease HI [EC:3.1.26.4] K03530 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta K04764 ihfA; integration host factor subunit alpha K05788 ihfB; integration host factor subunit beta K02313 dnaA; chromosomal replication initiator protein K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] K02316 dnaG; DNA primase [EC:2.7.7.101] K18996 repC; replication initiation protein RepC K03111 ssb; single-strand DNA-binding protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03470 rnhB; ribonuclease HII [EC:3.1.26.4] K02335 polA; DNA polymerase I [EC:2.7.7.7] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
03036 Chromosome and associated proteins [BR:apw03036]
03400 DNA repair and recombination proteins [BR:apw03400]
APA42C_26690 O6-methylguanine-DNA methyltransferase APA42C_04380 deoxyribodipyrimidine photolyase APA42C_25430 mutY; DNA glycosylase A/G-specific MutY APA42C_25410 endonuclease III APA42C_18370 acetyltransferase APA42C_02370 hydrolase APA42C_21030 phosphohydrolase APA42C_12370 deoxyuridine 5'-triphosphate nucleotidohydrolase APA42C_21860 DNA repair protein for alkylated DNA APA42C_16940 phage SPO1 DNA polymerase-related protein APA42C_04010 bacteriophage-type DNA polymerase APA42C_23560 DNA-3-methyladenine glycosylase I APA42C_12340 formamidopyrimidine-DNA glycosylase APA42C_10830 exodeoxyribonuclease III APA42C_21210 exodeoxyribonuclease III APA42C_21360 recJ; single-stranded-DNA-specific exonuclease RecJ APA42C_19090 DNA ligase APA42C_21430 DNA polymerase I APA42C_00110 uvrA; excinuclease UvrABC subunit A UvrA APA42C_02400 uvrB; excinuclease UvrABC helicase subunit B UvrB APA42C_10850 uvrC; excinuclease UvrABC subunit C UvrC APA42C_10450 uvrD_rep; DNA helicase II UvrD/Rep APA42C_09270 rpoB; DNA-directed RNA polymerase beta subunit APA42C_09280 rpoC; DNA-directed RNA polymerase beta' subunit APA42C_09550 rpoA; DNA-directed RNA polymerase alpha subunit APA42C_06440 rpoK; DNA-directed RNA polymerase omega subunit APA42C_11060 DNA helicase transcription-repair coupling factor APA42C_16730 mutS; DNA mismatch repair protein MutS APA42C_07410 mutL; DNA mismatch repair protein MutL APA42C_00200 exodeoxyribonuclease VII large subunit APA42C_14920 exodeoxyribonuclease VII small subunit APA42C_19490 DNA polymerase III alpha subunit APA42C_12310 DNA polymerase III beta subunit APA42C_07220 holC; DNA polymerase III chi subunit HolC APA42C_25500 DNA polymerase III delta subunit APA42C_11460 dnaC; DNA polymerase III delta prime subunit DnaC APA42C_08710 DNA polymerase III exonuclease epsilon subunit APA42C_20312 DNA polymerase III exonuclease epsilon subunit like protein APA42C_00520 DNA polymerase III gamma/tau subunit APA42C_25720 ssb; single-strand DNA binding protein Ssb APA42C_41760 recD_traA; DNA helicase RecD/TraA APA42C_00440 recA; DNA recombinase RecA APA42C_26260 ruvA; Holliday junction resolvase RusA APA42C_26250 ruvB; Holliday junction DNA helicase RuvB APA42C_26270 ruvC; Holliday junction resolvase RuvC APA42C_18330 primosomal protein N' APA42C_06980 radA; DNA repair protein RadA APA42C_12300 recF; DNA replication and repair protein RecF APA42C_11040 recG; DNA helicase RecG APA42C_19410 recO; DNA repair protein RecO APA42C_00540 recR; DNA recombinase RecR APA42C_19080 recN; DNA repair protein RecN APA42C_26100 uvrD_rep; DNA helicase II UvrD/Rep APA42C_26110 nuclease APA42C_41090 cas1; CRISPR-associated protein Cas1 APA42C_24320 DNA gyrase subunit A APA42C_12290 DNA gyrase subunit B Hsp90-like ATPase APA42C_07530 DNA topoisomerase I APA42C_40350 hu; histone-like bacterial DNA-binding protein HU APA42C_26450 hu; histone-like bacterial DNA-binding protein HU APA42C_41420 hu; histone-like bacterial DNA-binding protein HU APA42C_16460 hu; histone-like bacterial DNA-binding protein HU APA42C_16990 integration host factor DNA-binding alpha subunit APA42C_16930 integration host factor DNA-binding beta subunit APA42C_12590 recQ; DNA helicase RecQ APA42C_02490 impB; DNA polymerase IV APA42C_10940 lexA; transcriptional regulator LexA APA42C_41300 hypothetical protein APA42C_07310 recX; RecA repressor protein RecX APA42C_17830 DNA helicase C2 APA42C_10600 ribonucleotide-diphosphate reductase alpha subunit APA42C_02280 vitamin B12-dependent ribonucleotide reductase APA42C_10610 ribonucleotide-diphosphate reductase beta subunit
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03555 mutS; DNA mismatch repair protein MutS K03572 mutL; DNA mismatch repair protein MutL K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] K15342 cas1; CRISP-associated protein Cas1 K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03530 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta K04764 ihfA; integration host factor subunit alpha K05788 ihfB; integration host factor subunit beta K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K01356 lexA; repressor LexA [EC:3.4.21.88] K14161 imuB; protein ImuB K03565 recX; regulatory protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
03029 Mitochondrial biogenesis [BR:apw03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite
KEGG Orthology (KO) - Acetobacter pasteurianus IFO 3283-01-42C KEGG Orthology (KO) - Acetobacter pasteurianus IFO 3283-01-42C