KEGG Orthology (KO) - Burkholderia multivorans ATCC 17616 (JGI)

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:bmu03030]
     03410 Base excision repair [PATH:bmu03410]
     03420 Nucleotide excision repair [PATH:bmu03420]
     03430 Mismatch repair [PATH:bmu03430]
     03440 Homologous recombination [PATH:bmu03440]
       Bmul_1154 single-stranded-DNA-specific exonuclease RecJ
       Bmul_0538 single-strand binding protein
       Bmul_5572 single-strand binding protein
       Bmul_2168 DNA repair protein RecO
       Bmul_1448 recombination protein RecR
       Bmul_0650 recA protein
       Bmul_4827 DNA polymerase I
       Bmul_2695 Holliday junction DNA helicase RuvA
       Bmul_2696 Holliday junction DNA helicase RuvB
       Bmul_2694 crossover junction endodeoxyribonuclease RuvC
       Bmul_2662 ATP-dependent DNA helicase RecG
       Bmul_2088 exodeoxyribonuclease V
       Bmul_2089 exodeoxyribonuclease V
       Bmul_2087 exodeoxyribonuclease V
       Bmul_0964 DNA polymerase III
       Bmul_0002 DNA polymerase III
       Bmul_1446 DNA polymerase III
       Bmul_2730 DNA polymerase III
       Bmul_1382 DNA polymerase III
       Bmul_2392 DNA polymerase III
       Bmul_2036 DNA polymerase III
       Bmul_0829 DNA polymerase III chi subunit HolC
       Bmul_0113 primosomal protein N'
       Bmul_1401 primosomal replication protein N-like protein
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K02686 priB; primosomal replication protein N
     03450 Non-homologous end-joining [PATH:bmu03450]
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:bmu03000]
     03021 Transcription machinery [BR:bmu03021]
     03019 Messenger RNA biogenesis [BR:bmu03019]
     03041 Spliceosome
     03011 Ribosome [BR:bmu03011]
     03009 Ribosome biogenesis [BR:bmu03009]
     03016 Transfer RNA biogenesis [BR:bmu03016]
     03012 Translation factors [BR:bmu03012]
     03110 Chaperones and folding catalysts [BR:bmu03110]
     04131 Membrane trafficking [BR:bmu04131]
     04121 Ubiquitin system [BR:bmu04121]
     03051 Proteasome [BR:bmu03051]
     03032 DNA replication proteins [BR:bmu03032]
     03036 Chromosome and associated proteins [BR:bmu03036]
     03400 DNA repair and recombination proteins [BR:bmu03400]
       Bmul_5168 methylated-DNA--protein-cysteine methyltransferase
       Bmul_0736 methylated-DNA--protein-cysteine methyltransferase
       Bmul_5849 Deoxyribodipyrimidine photo-lyase
       Bmul_4692 Deoxyribodipyrimidine photo-lyase
       Bmul_2865 uracil-DNA glycosylase
       Bmul_0540 DNA-3-methyladenine glycosylase
       Bmul_0518 A/G-specific adenine glycosylase
       Bmul_0950 endonuclease III
       Bmul_4233 helicase c2
       Bmul_2824 NUDIX hydrolase
       Bmul_1577 NUDIX hydrolase
       Bmul_0780 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
       Bmul_3145 transcriptional regulator
       Bmul_5462 phage SPO1 DNA polymerase-related protein
       Bmul_1234 phage SPO1 DNA polymerase-related protein
       Bmul_3144 AlkA domain protein
       Bmul_1204 HhH-GPD family protein
       Bmul_5167 transcriptional regulator
       Bmul_0154 DNA-3-methyladenine glycosylase I
       Bmul_0517 formamidopyrimidine-DNA glycosylase
       Bmul_1126 exodeoxyribonuclease III Xth
       Bmul_3102 exodeoxyribonuclease III Xth
       Bmul_1154 single-stranded-DNA-specific exonuclease RecJ
       Bmul_1252 DNA ligase
       Bmul_4827 DNA polymerase I
       Bmul_0536 excinuclease ABC
       Bmul_5541 excinuclease ABC
       Bmul_1067 excinuclease ABC
       Bmul_2161 excinuclease ABC
       Bmul_1873 UvrD/REP helicase
       Bmul_0241 DNA-directed RNA polymerase
       Bmul_0242 DNA-directed RNA polymerase
       Bmul_0275 DNA-directed RNA polymerase
       Bmul_2400 DNA-directed RNA polymerase
       Bmul_1327 transcription-repair coupling factor
       Bmul_1186 DNA mismatch repair protein MutS
       Bmul_2621 DNA mismatch repair protein MutL
       Bmul_0752 exodeoxyribonuclease VII
       Bmul_4822 exodeoxyribonuclease VII
       Bmul_0964 DNA polymerase III
       Bmul_0002 DNA polymerase III
       Bmul_0829 DNA polymerase III chi subunit HolC
       Bmul_2730 DNA polymerase III
       Bmul_1382 DNA polymerase III
       Bmul_2392 DNA polymerase III
       Bmul_2036 DNA polymerase III
       Bmul_1446 DNA polymerase III
       Bmul_0538 single-strand binding protein
       Bmul_5572 single-strand binding protein
       Bmul_2284 DNA mismatch endonuclease Vsr
       Bmul_2088 exodeoxyribonuclease V
       Bmul_2089 exodeoxyribonuclease V
       Bmul_2087 exodeoxyribonuclease V
       Bmul_0650 recA protein
       Bmul_2695 Holliday junction DNA helicase RuvA
       Bmul_2696 Holliday junction DNA helicase RuvB
       Bmul_2694 crossover junction endodeoxyribonuclease RuvC
       Bmul_0113 primosomal protein N'
       Bmul_1401 primosomal replication protein N-like protein
       Bmul_1239 DNA repair protein RadA
       Bmul_2662 ATP-dependent DNA helicase RecG
       Bmul_2168 DNA repair protein RecO
       Bmul_1448 recombination protein RecR
       Bmul_2641 DNA repair protein RecN
       Bmul_5475 Ku protein
       Bmul_5476 DNA ligase D
       Bmul_2264 DNA gyrase
       Bmul_0003 DNA gyrase
       Bmul_5964 DNA topoisomerase
       Bmul_0066 histone family protein DNA-binding protein
       Bmul_1851 RecT protein
       Bmul_2692 transcriptional regulator
       Bmul_1773 integration host factor
       Bmul_2256 integration host factor
       Bmul_0243 ATP-dependent DNA helicase RecQ
       Bmul_4590 ATP-dependent DNA helicase
       Bmul_3279 histone family protein nucleoid-structuring protein H-NS
       Bmul_6044 histone family protein nucleoid-structuring protein H-NS
       Bmul_0190 histone family protein nucleoid-structuring protein H-NS
       Bmul_0158 histone family protein nucleoid-structuring protein H-NS
       Bmul_5767 histone family protein nucleoid-structuring protein H-NS
       Bmul_3806 histone family protein nucleoid-structuring protein H-NS
       Bmul_6182 hypothetical protein
       Bmul_5701 histone family protein nucleoid-structuring protein H-NS
       Bmul_5655 histone family protein nucleoid-structuring protein H-NS
       Bmul_1128 DNA-directed DNA polymerase
       Bmul_1637 transcriptional repressor
       Bmul_5258 DNA polymerase B region
       Bmul_6271 conserved hypothetical protein
       Bmul_0475 conserved hypothetical protein
       Bmul_0476 conserved hypothetical protein
       Bmul_6270 conserved hypothetical protein
       Bmul_6269 DNA polymerase III
       Bmul_0477 DNA polymerase III
       Bmul_0651 regulatory protein RecX
       Bmul_4386 PHP domain protein
       Bmul_0146 UvrD/REP helicase
       Bmul_1479 helicase c2
       Bmul_4416 DEAD/H associated domain protein
       Bmul_5876 ribonucleoside-diphosphate reductase
       Bmul_2789 ribonucleoside-diphosphate reductase
       Bmul_2788 Ribonucleoside-diphosphate reductase
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:3.6.4.12]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K02686 priB; primosomal replication protein N
K04485 radA; DNA repair protein RadA/Sms
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K07455 recT; recombination protein RecT
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K02336 polB; DNA polymerase II [EC:2.7.7.7]
K14160 imuA; protein ImuA
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03656 rep; ATP-dependent DNA helicase Rep [EC:3.6.4.12]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:bmu03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: January 27, 2020