Messenger RNA Biogenesis - Bos taurus (cow)

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     KO
 Eukaryotic type
   mRNA processing factors
   mRNA surveillance and transport factors
     Transport factors
     Surveillance factors
     Factors involved in mRNA localization
     mRNA cycle factors
       Common to processing body (P body) and stress granule
         540834 XRN1; 5'-3' exoribonuclease 1
         406231 AGO3; protein argonaute-3
         522972 AGO1; protein argonaute-1 isoform 1
         528046 AGO4; protein argonaute-4 isoform X2
         404130 AGO2; protein argonaute-2
         281751 EIF4E; eukaryotic translation initiation factor 4E
         519920 EIF4E2; eukaryotic translation initiation factor 4E type 2 isoform 1
         614570 EIF4E1B; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E type 1B
         532933 UPF1; regulator of nonsense transcripts 1 isoform X2
         510093 DDX3X; ATP-dependent RNA helicase DDX3X
         783057 DDX3Y; DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
         513906 DDX6; probable ATP-dependent RNA helicase DDX6
         529318 MEX3C; RNA-binding E3 ubiquitin-protein ligase MEX3C
         538945 MEX3D; RNA-binding protein MEX3D
         539904 MEX3B; RNA-binding protein MEX3B
         618154 MEX3A; RNA-binding protein MEX3A
         509781 FASTK; fas-activated serine/threonine kinase
         529294 LSM14B; protein LSM14 homolog B isoform X1
         538838 LSM14A; protein LSM14 homolog A
         509917 PCBP1; poly(rC)-binding protein 1
         540653 PCBP2; poly(rC)-binding protein 2
         287023 YBX1; Y-box-binding protein 1
         617525 LIMD1; LIM domain-containing protein 1
         519937 AJUBA; LIM domain-containing protein ajuba
         505059 WTIP; Wilms tumor protein 1-interacting protein
         516043 APOBEC1; C->U-editing enzyme APOBEC-1
         504505 APOBEC3Z2; apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B
         507162 APOBEC3Z1; probable DNA dC->dU-editing enzyme APOBEC-3A
         108771180 APOBEC3H; DNA dC->dU-editing enzyme APOBEC-3H
         523206 MOV10; putative helicase MOV-10
         767836 PNRC2; proline-rich nuclear receptor coactivator 2
         767620 TNPO1; transportin-1
         525143 SMG1; serine/threonine-protein kinase SMG1
         513598 SMG5; nonsense-mediated mRNA decay factor SMG5
         516411 SMG6; telomerase-binding protein EST1A
         537131 SMG7; nonsense-mediated mRNA decay factor SMG7
         282127 ZFP36; tristetraprolin
         614773 ZFP36L1; mRNA decay activator protein ZFP36L1
         767898 ZFP36L2; zinc finger protein 36, C3H1 type-like 2
         614997 LIN28A; protein lin-28 homolog A
         112448101 LIN28B; protein lin-28 homolog B isoform X1
         132343974 protein lin-28 homolog A-like
         615059 HTT; huntingtin isoform X1
         523408 IPO8; importin-8
         537799 BICC1; protein bicaudal C homolog 1 isoform X1
         782669 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3
         505093 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1
         785761 heterogeneous nuclear ribonucleoprotein A1
         101902301 heterogeneous nuclear ribonucleoprotein A3-like
         100848353 heterogeneous nuclear ribonucleoprotein A1-like
         614922 heterogeneous nuclear ribonucleoprotein A1-like
         785445 heterogeneous nuclear ribonucleoprotein A1-like
         112445996 heterogeneous nuclear ribonucleoprotein A1-like
         101902221 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A3-like
         781499 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A3-like
         615271 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A3-like
         282322 PRKACA; cAMP-dependent protein kinase catalytic subunit alpha
         282323 PRKACB; cAMP-dependent protein kinase catalytic subunit beta
         515517 LARP1B; la-related protein 1B isoform X3
         505690 LARP1; la-related protein 1
         532649 ATXN2; ataxin-2 isoform X2
         539507 ATXN2L; ataxin-2-like protein
K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
K11593 ELF2C; eukaryotic translation initiation factor 2C 
K11593 ELF2C; eukaryotic translation initiation factor 2C 
K11593 ELF2C; eukaryotic translation initiation factor 2C 
K11593 ELF2C; eukaryotic translation initiation factor 2C 
K03259 EIF4E; translation initiation factor 4E 
K03259 EIF4E; translation initiation factor 4E 
K03259 EIF4E; translation initiation factor 4E 
K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8] 
K18749 LSM14; protein LSM14 
K18749 LSM14; protein LSM14 
K12889 PCBP1; poly(rC)-binding protein 1 
K13162 PCBP2; poly(rC)-binding protein 2 
K09276 YBX1; Y-box-binding protein 1 
K16682 AJUBA; LIM domain-containing protein 
K16682 AJUBA; LIM domain-containing protein 
K16682 AJUBA; LIM domain-containing protein 
K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
K18751 PNRC2; proline-rich nuclear receptor coactivator 2 
K18752 TNPO1; transportin-1 
K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
K11125 SMG5; protein SMG5 
K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
K14409 SMG7; protein SMG7 
K15308 TTP; tristetraprolin 
K18753 ZFP36L; butyrate response factor 
K18753 ZFP36L; butyrate response factor 
K18754 LIN28; protein lin-28 
K18754 LIN28; protein lin-28 
K18754 LIN28; protein lin-28 
K04533 HD; huntingtin 
K18755 IPO8; importin-8 
K18756 BICC1; protein bicaudal C 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K04345 PKA; protein kinase A [EC:2.7.11.11] 
K04345 PKA; protein kinase A [EC:2.7.11.11] 
K18757 LARP1; la-related protein 1 
K18757 LARP1; la-related protein 1 
K23625 ATXN2_2L; ataxin 2/2L 
K23625 ATXN2_2L; ataxin 2/2L 
       P-body specific factors
       Stress granule specific factors
   mRNA degradation factors
 
 Prokaryotic type

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Last updated: April 9, 2024