09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:buo03030]
03410 Base excision repair [PATH:buo03410]
03420 Nucleotide excision repair [PATH:buo03420]
03430 Mismatch repair [PATH:buo03430]
03440 Homologous recombination [PATH:buo03440]
BRPE64_ACDS18270 recJ; single-stranded-DNA-specific exonuclease RecJ BRPE64_ACDS02680 ssb; single-stranded DNA-binding protein BRPE64_ACDS19640 recO; DNA repair protein RecO BRPE64_ACDS16060 recR; recombination protein RecR BRPE64_ACDS04710 recA; protein RecA BRPE64_BCDS12210 polA; DNA polymerase I BRPE64_ACDS03430 ruvA; Holliday junction ATP-dependent DNA helicase RuvA BRPE64_ACDS03420 ruvB; Holliday junction ATP-dependent DNA helicase RuvB BRPE64_ACDS03440 ruvC; crossover junction endodeoxyribonuclease RuvC BRPE64_ACDS03740 recG; ATP-dependent DNA helicase RecG BRPE64_ACDS09590 recB; exodeoxyribonuclease V beta subunit BRPE64_ACDS09580 recC; exodeoxyribonuclease V gamma subunit BRPE64_ACDS09600 recD; exodeoxyribonuclease V alpha subunit BRPE64_ACDS09240 dnaE; DNA polymerase III alpha subunit BRPE64_ACDS00020 dnaN; DNA polymerase III subunit beta BRPE64_ACDS16080 dnaX; DNA polymerase III subunits gamma and tau BRPE64_ACDS23190 holA; DNA polymerase III delta subunit BRPE64_ACDS13930 holB; DNA polymerase III delta prime subunit BRPE64_BCDS11360 ydjQ; DNA polymerase III epsilon subunit BRPE64_ACDS19440 dnaQ; DNA polymerase III epsilon subunit BRPE64_ACDS07620 DNA polymerase III epsilon subunit BRPE64_ACDS06370 DNA polymerase III chi subunit HolC BRPE64_ACDS27530 priA; primosomal protein N' BRPE64_ACDS13070 putative primosomal replication protein N PriB
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K03111 ssb; single-strand DNA-binding protein K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03553 recA; recombination protein RecA K02335 polA; DNA polymerase I [EC:2.7.7.7] K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K02686 priB; primosomal replication protein N
03450 Non-homologous end-joining [PATH:buo03450]
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:buo03000]
03021 Transcription machinery [BR:buo03021]
03019 Messenger RNA biogenesis [BR:buo03019]
03041 Spliceosome
03011 Ribosome [BR:buo03011]
03009 Ribosome biogenesis [BR:buo03009]
03016 Transfer RNA biogenesis [BR:buo03016]
03012 Translation factors [BR:buo03012]
03110 Chaperones and folding catalysts [BR:buo03110]
04131 Membrane trafficking [BR:buo04131]
04121 Ubiquitin system
03051 Proteasome [BR:buo03051]
03032 DNA replication proteins [BR:buo03032]
03036 Chromosome and associated proteins [BR:buo03036]
03400 DNA repair and recombination proteins [BR:buo03400]
BRPE64_BCDS02590 ogt; methylated-DNA--protein-cysteine methyltransferase BRPE64_ACDS22600 methylated-DNA--protein-cysteine methyltransferase BRPE64_ECDS03040 methylated-DNA--protein-cysteine methyltransferase BRPE64_ACDS22100 phr; deoxyribodipyrimidine photolyase FAD-binding protein BRPE64_ACDS24490 ung; uracil-DNA glycosylase BRPE64_BCDS10510 putative 3-methyladenine DNA glycosylase BRPE64_ACDS02470 mutY; A/G-specific DNA-adenine glycosylase BRPE64_ACDS09030 nth; endonuclease III BRPE64_BCDS10030 DinG family ATP-dependent helicase BRPE64_ACDS24050 mutT; 8-oxo-dGTPase BRPE64_CCDS07850 NUDIX hydrolase BRPE64_CCDS08510 nudix hydrolase BRPE64_ACDS05750 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase BRPE64_ACDS28270 ada; transcriptional regulator AraC family BRPE64_DCDS08970 uracil-DNA glycosylase superfamily BRPE64_ACDS11600 phage SPO1 DNA polymerase-related protein BRPE64_DCDS02910 phage SPO1 DNA polymerase-related protein BRPE64_BCDS03100 phage SPO1 DNA polymerase-related protein BRPE64_ACDS17840 HhH-GPD family protein BRPE64_DCDS03970 alkA; AlkA domain protein BRPE64_ACDS01130 tag; DNA-3-methyladenine glycosylase I BRPE64_ECDS03230 putative uncharacterized protein BRPE64_ACDS02460 mutM; formamidopyrimidine-DNA glycosylase BRPE64_ACDS00500 exodeoxyribonuclease III Xth BRPE64_ACDS10060 exodeoxyribonuclease III BRPE64_BCDS02340 exodeoxyribonuclease III Xth BRPE64_ACDS18270 recJ; single-stranded-DNA-specific exonuclease RecJ BRPE64_ACDS11820 ligA; DNA ligase BRPE64_BCDS12210 polA; DNA polymerase I BRPE64_ACDS02660 uvrA; UvrABC system protein A BRPE64_DCDS07750 excinuclease ABC A subunit BRPE64_BCDS10280 UvrA family protein BRPE64_ACDS10330 uvrB; UvrABC system protein B BRPE64_ACDS19560 uvrC; UvrABC system protein C BRPE64_ACDS18750 uvrD; UvrD/REP helicase BRPE64_ACDS20140 UvrD/REP helicase BRPE64_ACDS25940 rpoB; DNA-directed RNA polymerase subunit beta BRPE64_ACDS25930 rpoC; DNA-directed RNA polymerase subunit beta' BRPE64_ACDS25590 rpoA; DNA-directed RNA polymerase subunit alpha BRPE64_ACDS07550 rpoZ; DNA-directed RNA polymerase subunit omega BRPE64_ACDS13430 mfd; transcription-repair coupling factor BRPE64_ACDS17980 mutS; DNA mismatch repair protein MutS BRPE64_ACDS04520 mutL; DNA mismatch repair protein MutL BRPE64_ACDS22420 xseA; exodeoxyribonuclease 7 large subunit BRPE64_BCDS12150 xseB; exodeoxyribonuclease 7 small subunit BRPE64_ACDS09240 dnaE; DNA polymerase III alpha subunit BRPE64_ACDS00020 dnaN; DNA polymerase III subunit beta BRPE64_ACDS06370 DNA polymerase III chi subunit HolC BRPE64_ACDS23190 holA; DNA polymerase III delta subunit BRPE64_ACDS13930 holB; DNA polymerase III delta prime subunit BRPE64_BCDS11360 ydjQ; DNA polymerase III epsilon subunit BRPE64_ACDS19440 dnaQ; DNA polymerase III epsilon subunit BRPE64_ACDS07620 DNA polymerase III epsilon subunit BRPE64_ACDS16080 dnaX; DNA polymerase III subunits gamma and tau BRPE64_ACDS02680 ssb; single-stranded DNA-binding protein BRPE64_ACDS09590 recB; exodeoxyribonuclease V beta subunit BRPE64_ACDS09580 recC; exodeoxyribonuclease V gamma subunit BRPE64_ACDS09600 recD; exodeoxyribonuclease V alpha subunit BRPE64_ACDS04710 recA; protein RecA BRPE64_ACDS03430 ruvA; Holliday junction ATP-dependent DNA helicase RuvA BRPE64_ACDS03420 ruvB; Holliday junction ATP-dependent DNA helicase RuvB BRPE64_ACDS03440 ruvC; crossover junction endodeoxyribonuclease RuvC BRPE64_ACDS27530 priA; primosomal protein N' BRPE64_ACDS13070 putative primosomal replication protein N PriB BRPE64_ACDS11670 radA; DNA repair protein radA BRPE64_ACDS03740 recG; ATP-dependent DNA helicase RecG BRPE64_ACDS19640 recO; DNA repair protein RecO BRPE64_ACDS16060 recR; recombination protein RecR BRPE64_ACDS03960 recN; DNA repair protein RecN BRPE64_ACDS14660 rdgC; recombination-associated protein RdgC BRPE64_ACDS15540 probable DNA repair protein BC1003_1568 BRPE64_ACDS15530 DNA ligase D BRPE64_ACDS20730 gyrA; DNA gyrase subunit A BRPE64_ACDS00030 gyrB; DNA gyrase subunit B BRPE64_BCDS12430 DNA topoisomerase BRPE64_ACDS28030 DNA-binding protein HU-alpha BRPE64_ACDS13640 hupB; histone family protein DNA-binding protein BRPE64_ACDS03460 fis; DNA-binding protein Fis BRPE64_ACDS11260 ihfA; integration host factor subunit alpha BRPE64_ACDS20650 ihfB; integration host factor subunit beta BRPE64_ACDS25920 recQ; ATP-dependent DNA helicase RecQ BRPE64_CCDS02360 histone family protein nucleoid-structuring protein H-NS BRPE64_BCDS07680 histone family protein nucleoid-structuring protein H-NS BRPE64_BCDS05810 putative uncharacterized protein BRPE64_ACDS28690 histone family protein nucleoid-structuring protein H-NS BRPE64_DCDS03750 histone family protein nucleoid-structuring protein H-NS BRPE64_BCDS02240 dinB; DNA polymerase IV BRPE64_ACDS12940 lexA; LexA repressor BRPE64_BCDS07120 DNA polymerase BRPE64_ECDS03200 polB; DNA polymerase BRPE64_ACDS17180 putative uncharacterized protein BRPE64_ACDS17170 putative uncharacterized protein BRPE64_ACDS17160 error-prone DNA polymerase BRPE64_ACDS28580 dinD; DNA-damage-inducible protein BRPE64_ACDS04720 regulatory protein RecX BRPE64_ACDS27390 rep; UvrD/REP helicase BRPE64_ACDS15710 putative ATP-dependent helicase BRPE64_ACDS05500 DEAD/H associated domain protein BRPE64_BCDS06440 DEAD/H associated domain protein BRPE64_BCDS09400 ribonucleoside-diphosphate reductase adenosylcobalamin-dependent BRPE64_ACDS23810 nrdA; ribonucleoside-diphosphate reductase BRPE64_ACDS23770 nrdB; ribonucleoside-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03701 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03555 mutS; DNA mismatch repair protein MutS K03572 mutL; DNA mismatch repair protein MutL K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K02686 priB; primosomal replication protein N K04485 radA; DNA repair protein RadA/Sms K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K03554 rdgC; recombination associated protein RdgC K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03530 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein K04764 ihfA; integration host factor subunit alpha K05788 ihfB; integration host factor subunit beta K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K03746 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K01356 lexA; repressor LexA [EC:3.4.21.88] K02336 polB; DNA polymerase II [EC:2.7.7.7] K02336 polB; DNA polymerase II [EC:2.7.7.7] K14160 imuA; protein ImuA K14161 imuB; protein ImuB K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] K14623 dinD; DNA-damage-inducible protein D K03565 recX; regulatory protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
03029 Mitochondrial biogenesis [BR:buo03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite