KEGG Orthology (KO) - Cutibacterium acnes KCOM 1861 (= ChDC B594)

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:cacn03030]
     03410 Base excision repair [PATH:cacn03410]
     03420 Nucleotide excision repair [PATH:cacn03420]
     03430 Mismatch repair [PATH:cacn03430]
     03440 Homologous recombination [PATH:cacn03440]
       RN83_11450 single-stranded DNA-binding protein
       RN83_08470 single-stranded DNA-binding protein
       RN83_00435 recombinase RecF
       RN83_05075 DNA repair protein RecO
       RN83_01505 recombination protein RecR
       RN83_05420 recombinase RecA
       RN83_04445 DNA polymerase I
       RN83_06165 ATP-dependent DNA helicase RuvA
       RN83_06170 ATP-dependent DNA helicase RuvB
       RN83_06160 crossover junction endodeoxyribonuclease RuvC
       RN83_07800 ATP-dependent DNA helicase RecG
       RN83_06955 exodeoxyribonuclease V subunit beta
       RN83_06950 exodeoxyribonuclease V subunit gamma
       RN83_06960 exodeoxyribonuclease V subunit alpha
       RN83_06120 DNA polymerase III subunit alpha
       RN83_00425 DNA polymerase III subunit beta
       RN83_01495 DNA polymerase III subunit gamma/tau
       RN83_04855 DNA polymerase III subunit delta
       RN83_01700 DNA polymerase III subunit delta'
       RN83_04160 endonuclease
       RN83_06345 primosome assembly protein PriA
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
     03450 Non-homologous end-joining
     03460 Fanconi anemia pathway
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:cacn03000]
     03021 Transcription machinery [BR:cacn03021]
     03019 Messenger RNA biogenesis [BR:cacn03019]
     03041 Spliceosome
     03011 Ribosome [BR:cacn03011]
     03009 Ribosome biogenesis [BR:cacn03009]
     03016 Transfer RNA biogenesis [BR:cacn03016]
     03012 Translation factors [BR:cacn03012]
     03110 Chaperones and folding catalysts [BR:cacn03110]
     04131 Membrane trafficking [BR:cacn04131]
     04121 Ubiquitin system
     03051 Proteasome [BR:cacn03051]
     03032 DNA replication proteins [BR:cacn03032]
     03036 Chromosome and associated proteins [BR:cacn03036]
     03400 DNA repair and recombination proteins [BR:cacn03400]
       RN83_07595 cysteine methyltransferase
       RN83_03340 uracil-DNA glycosylase
       RN83_11540 3-methyladenine DNA glycosylase
       RN83_01975 adenine glycosylase
       RN83_01600 endonuclease III
       RN83_02865 helicase
       RN83_09230 7
       RN83_05630 deoxyuridine 5'-triphosphate nucleotidohydrolase
       RN83_06560 uracil-DNA glycosylase
       RN83_07720 formamidopyrimidine-DNA glycosylase
       RN83_08380 DNA glycosylase
       RN83_09785 exodeoxyribonuclease III
       RN83_11485 endonuclease IV
       RN83_08400 aromatic ring-opening dioxygenase LigA
       RN83_04445 DNA polymerase I
       RN83_04580 excinuclease ABC subunit A
       RN83_04560 excinuclease ABC subunit B
       RN83_04600 excinuclease ABC subunit C
       RN83_06945 DNA helicase II
       RN83_06970 ATP-dependent DNA helicase
       RN83_09105 ATP-dependent DNA helicase
       RN83_09705 DNA-directed RNA polymerase subunit beta
       RN83_09700 DNA-directed RNA polymerase subunit beta'
       RN83_09430 DNA-directed RNA polymerase subunit alpha
       RN83_06330 DNA-directed RNA polymerase subunit omega
       RN83_03220 transcription-repair coupling factor
       RN83_03400 exodeoxyribonuclease VII large subunit
       RN83_03395 exodeoxyribonuclease VII small subunit
       RN83_06120 DNA polymerase III subunit alpha
       RN83_00425 DNA polymerase III subunit beta
       RN83_04855 DNA polymerase III subunit delta
       RN83_01700 DNA polymerase III subunit delta'
       RN83_04160 endonuclease
       RN83_01495 DNA polymerase III subunit gamma/tau
       RN83_11450 single-stranded DNA-binding protein
       RN83_08470 single-stranded DNA-binding protein
       RN83_06955 exodeoxyribonuclease V subunit beta
       RN83_06950 exodeoxyribonuclease V subunit gamma
       RN83_06960 exodeoxyribonuclease V subunit alpha
       RN83_05420 recombinase RecA
       RN83_06165 ATP-dependent DNA helicase RuvA
       RN83_06170 ATP-dependent DNA helicase RuvB
       RN83_06160 crossover junction endodeoxyribonuclease RuvC
       RN83_06345 primosome assembly protein PriA
       RN83_02030 DNA repair protein RadA
       RN83_00435 recombinase RecF
       RN83_07800 ATP-dependent DNA helicase RecG
       RN83_05075 DNA repair protein RecO
       RN83_01505 recombination protein RecR
       RN83_07400 DNA repair protein RecN
       RN83_11120 subtype I-E CRISPR-associated endonuclease Cas1
       RN83_05585 DNA topoisomerase IV
       RN83_00460 DNA gyrase subunit A
       RN83_05570 DNA topoisomerase IV
       RN83_00455 DNA gyrase subunit B
       RN83_01685 DNA topoisomerase I
       RN83_08740 integration host factor
       RN83_04965 recombinase RecQ
       RN83_08680 DNA polymerase IV
       RN83_05475 LexA family transcriptional regulator
       RN83_08575 DNA repair nucleotidyltransferase
       RN83_08565 DNA polymerase III subunit alpha
       RN83_05425 recombinase RecX
       RN83_05470 ATP-dependent helicase
       RN83_02185 DNA mismatch repair protein MutT
       RN83_07380 ADP-ribose pyrophosphatase
       RN83_05490 vitamin B12-dependent ribonucleotide reductase
       RN83_10825 ribonucleotide-diphosphate reductase subunit alpha
       RN83_10830 ribonucleotide-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:3.6.4.12]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K15342 cas1; CRISP-associated protein Cas1
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K23258 mutT1; 8-oxo-dGTP phosphatase [EC:3.6.1.-]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
     03029 Mitochondrial biogenesis [BR:cacn03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: January 24, 2020