KEGG BRITE: Transcription Factors - Cyprinus carpio (common carp)

Transcription Factors - Cyprinus carpio (common carp)

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KO

 Eukaryotic type

   Basic leucine zipper (bZIP)

   Basic helix-loop-helix (bHLH)

     Ubiquitous (class A) factors

     Myogenic transcription factors

     Achaete-Scute

     Tal/Twist/Atonal/Hen, Lymphoid factors

     Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors

     Tal/Twist/Atonal/Hen, HEN

     Tal/Twist/Atonal/Hen, Mesp

     Tal/Twist/Atonal/Hen, Atonal

     Tal/Twist/Atonal/Hen, Pancreatic factors

     Hairy, Hairy/E(SPL)

     Hairy, Fungal regulators

     Factors with PAS domain

       109082599 aryl hydrocarbon receptor-like
       109082144 aryl hydrocarbon receptor-like
       109086667 LOW QUALITY PROTEIN: aryl hydrocarbon receptor-like
       109105787 aryl hydrocarbon receptor-like
       109104023 aryl hydrocarbon receptor-like
       109063736 uncharacterized protein LOC109063736
       109066178 uncharacterized protein LOC109066178
       109062781 uncharacterized protein LOC109062781
       109062786 aryl hydrocarbon receptor repressor-like isoform X1
       109101721 LOW QUALITY PROTEIN: hypoxia-inducible factor 1-alpha-like
       109100693 hypoxia-inducible factor 1-alpha-like
       109112424 hypoxia-inducible factor 1-alpha-like
       109103773 hypoxia-inducible factor 1-alpha-like isoform X1
       109094582 endothelial PAS domain-containing protein 1-like
       109099593 endothelial PAS domain-containing protein 1-like
       109087689 aryl hydrocarbon receptor nuclear translocator-like
       109092985 arnt2; aryl hydrocarbon receptor nuclear translocator 2 isoform X1
       109048374 neuronal PAS domain-containing protein 3-like
       109048378 neuronal PAS domain-containing protein 3-like
       109060942 neuronal PAS domain-containing protein 3-like
       109074523 neuronal PAS domain-containing protein 1-like
       109061883 circadian locomoter output cycles protein kaput-like
       109101407 neuronal PAS domain-containing protein 4-like isoform X1
       109102163 LOW QUALITY PROTEIN: neuronal PAS domain-containing protein 4-like
       109102161 neuronal PAS domain-containing protein 4 isoform X1
       109044823 clock; circadian locomoter output cycles protein kaput
       109066967 circadian locomoter output cycles protein kaput-like
       109059483 aryl hydrocarbon receptor nuclear translocator-like protein 1
       109090352 aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1
       109067828 LOW QUALITY PROTEIN: aryl hydrocarbon receptor nuclear translocator-like protein 1
       109051790 LOW QUALITY PROTEIN: aryl hydrocarbon receptor nuclear translocator-like protein 1
       109108724 LOW QUALITY PROTEIN: aryl hydrocarbon receptor nuclear translocator-like protein 2
       109068666 single-minded homolog 2-like
       109099257 LOW QUALITY PROTEIN: single-minded homolog 1-A-like
       109088036 single-minded homolog 2-like
       109097447 single-minded homolog 2-like
       109092037 LOW QUALITY PROTEIN: single-minded homolog 1-like
       109113653 single-minded homolog 1-like isoform X1
       109059956 LOW QUALITY PROTEIN: single-minded homolog 1-A-like

K09093 AHR; aryl hydrocarbon receptor 
K09093 AHR; aryl hydrocarbon receptor 
K09093 AHR; aryl hydrocarbon receptor 
K09093 AHR; aryl hydrocarbon receptor 
K09093 AHR; aryl hydrocarbon receptor 
K09094 AHRR; aryl hydrocarbon receptor repressor 
K09094 AHRR; aryl hydrocarbon receptor repressor 
K09094 AHRR; aryl hydrocarbon receptor repressor 
K09094 AHRR; aryl hydrocarbon receptor repressor 
K08268 HIF1A; hypoxia-inducible factor 1 alpha 
K08268 HIF1A; hypoxia-inducible factor 1 alpha 
K08268 HIF1A; hypoxia-inducible factor 1 alpha 
K08268 HIF1A; hypoxia-inducible factor 1 alpha 
K09095 HIF2A; hypoxia-inducible factor 2 alpha 
K09095 HIF2A; hypoxia-inducible factor 2 alpha 
K09097 ARNT; aryl hydrocarbon receptor nuclear translocator 
K15589 ARNT2; aryl hydrocarbon receptor nuclear translocator 2 
K09098 NPAS1_3; neuronal PAS domain-containing protein 1/3 
K09098 NPAS1_3; neuronal PAS domain-containing protein 1/3 
K09098 NPAS1_3; neuronal PAS domain-containing protein 1/3 
K09098 NPAS1_3; neuronal PAS domain-containing protein 1/3 
K09026 NPAS2; neuronal PAS domain-containing protein 2 
K26457 NPAS4; neuronal PAS domain-containing protein 4 
K26457 NPAS4; neuronal PAS domain-containing protein 4 
K26457 NPAS4; neuronal PAS domain-containing protein 4 
K02223 CLOCK; circadian locomoter output cycles kaput protein [EC:2.3.1.48] 
K02223 CLOCK; circadian locomoter output cycles kaput protein [EC:2.3.1.48] 
K02296 ARNTL; aryl hydrocarbon receptor nuclear translocator-like protein 1 
K02296 ARNTL; aryl hydrocarbon receptor nuclear translocator-like protein 1 
K02296 ARNTL; aryl hydrocarbon receptor nuclear translocator-like protein 1 
K09099 ARNTL2; aryl hydrocarbon receptor nuclear translocator-like protein 2 
K09099 ARNTL2; aryl hydrocarbon receptor nuclear translocator-like protein 2 
K09100 SIM; single-minded 
K09100 SIM; single-minded 
K09100 SIM; single-minded 
K09100 SIM; single-minded 
K09100 SIM; single-minded 
K09100 SIM; single-minded 
K09100 SIM; single-minded

     Yabby

INO

     HLH domain only

   Basic helix-loop-helix/leucine zipper (bHLH-ZIP)

   Other basic domains

   Zinc finger

   Helix-turn-helix

   beta-Scaffold factors with minor groove contacts

   Other transcription factors

 Prokaryotic type

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Last updated: April 5, 2024
Classification taken and modified from TRANSFAC 7.0