CJA_2581 rnc; ribonuclease III
       CJA_3117 orn; oligoribonuclease
       CJA_2580 era; GTP-binding protein Era
       CJA_0460 GTP1/OBG family
       CJA_0393 DnaK suppressor protein
       CJA_0435 nusA; N utilization substance protein A
       CJA_2693 nusB; transcription antitermination factor NusB
       CJA_0687 nusG; transcription termination/antitermination factor NusG
       CJA_1966 rsuA1; ribosomal small subunit pseudouridine synthase A
       CJA_0861 ksgA; dimethyladenosine transferase
       CJA_3580 sun; ribosomal RNA small subunit methyltransferase B
       CJA_2422 tRNA and rRNA cytosine-C5-methylase
       CJA_1967 putative ribosomal RNA small subunit methyltransferase C
       CJA_3501 putative methyltransferase
       CJA_0070 conserved hypothetical protein TIGR00046
       CJA_3819 gidB; methyltransferase GidB
       CJA_2937 mraW; S-adenosyl-methyltransferase MraW
       CJA_0928 conserved hypothetical protein TIGR00096
       CJA_0983 conserved hypothetical protein
       CJA_1391 rrmA; rRNA guanine-N1-methyltransferase
       CJA_2994 RNA methyltransferase, TrmH family, group 3
       CJA_1790 RNA methyltransferase, TrmH family
       CJA_2675 rrmJ; ribosomal RNA large subunit J
       CJA_0788 conserved hypothetical protein TIGR00246
       CJA_0463 putative lipoprotein
       CJA_2374 predicted SAM-dependent methyltransferase
       CJA_3372 conserved hypothetical protein
       CJA_2156 Putative RNA methylase family UPF0020 family
       CJA_2381 hypothetical protein
       CJA_1478 radical SAM enzyme, Cfr family
       CJA_2576 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA
       CJA_1991 ribosomal large subunit pseudouridine synthase A
       CJA_1082 ribosomal large subunit pseudouridine synthase A
       CJA_1971 pseudouridine synthase Rlu family protein
       CJA_1611 putative pseudouridylate synthase
       CJA_1800 RNA pseudouridylate synthase family protein
       CJA_1669 pseudouridine synthase, RluA family subfamily
       CJA_3205 pseudouridine synthase, RluA family subfamily
       CJA_2572 pseudouridylate synthase
       CJA_0906 rimI; ribosomal-protein-alanine acetyltransferase
       CJA_1251 ribosomal protein S6 modification protein
       CJA_1434 rimM; 16S rRNA processing protein RimM
       CJA_1894 MiaB-like tRNA modifying enzyme YliG, TIGR01125
       CJA_2742 prmA; ribosomal protein L11 methyltransferase
       CJA_1950 modification methylase, HemK family
       CJA_2493 conserved hypothetical protein
       CJA_1667 ribonuclease, Rne/Rng family protein
       CJA_2813 ribonuclease, Rne/Rng family
       CJA_0084 conserved hypothetical protein TIGR00250
       CJA_0306 DbpA RNA binding domain family
       CJA_1979 deaD-1; ATP-dependent RNA helicase DeaD
       CJA_1387 ATP-dependent RNA helicase, DEAD box family
       CJA_3118 GTPase, YjeQ family
       CJA_1485 GTP-binding protein EngA
       CJA_1443 predicted GTPase
       CJA_3078 hypothetical protein
       CJA_3586 Sua5/YciO/YrdC/YwlC family protein
       CJA_3571 spoT; guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase
       CJA_0437 rbfA; ribosome-binding factor A
       CJA_0434 Uncharacterized BCR, YhbC family
       CJA_0787 iojap domain protein
       CJA_1637 hypothetical protein
       CJA_2676 hypothetical protein
       CJA_2812 conserved hypothetical protein
       CJA_2157 ribosome modulation factor-related protein
       CJA_2807 yfiA; ribosomal subunit interface protein
       CJA_0641 ychF; GTP-binding protein YchF
       CJA_1672 predicted metal-binding/nucleic acid-binding protein

K03685 rnc; ribonuclease III [EC:3.1.26.3]
K13288 orn; oligoribonuclease [EC:3.1.-.-]
K03595 era; GTPase
K03979 obgE; GTPase [EC:3.6.5.-]
K06204 dksA; RNA polymerase-binding transcription factor
K02600 nusA; transcription termination/antitermination protein NusA
K03625 nusB; transcription antitermination protein NusB
K02601 nusG; transcription termination/antitermination protein NusG
K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
K02860 rimM; 16S rRNA processing protein RimM
K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
K08300 rne; ribonuclease E [EC:3.1.26.12]
K08301 rng; ribonuclease G [EC:3.1.26.-]
K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:3.6.4.13]
K05592 deaD; ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
K05590 srmB; ATP-dependent RNA helicase SrmB [EC:3.6.4.13]
K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
K03977 engA; GTPase
K14540 rbgA; ribosome biogenesis GTPase A
K03665 hflX; GTPase
K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
K02834 rbfA; ribosome-binding factor A
K09748 rimP; ribosome maturation factor RimP
K09710 ybeB; ribosome-associated protein
K07042 ybeY; probable rRNA maturation factor
K07574 yhbY; RNA-binding protein
K09889 yjgA; ribosome-associated protein
K03812 rmf; ribosome modulation factor
K05808 hpf; ribosome hibernation promoting factor
K06942 ychF; ribosome-binding ATPase
K07040 yceD; DUF177 domain-containing protein