Messenger RNA Biogenesis - Callithrix jacchus (white-tufted-ear marmoset)

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     KO
 Eukaryotic Type
   mRNA processing factors
   mRNA surveillance and transport factors
     Transport factors
     Surveillance factors
     Factors involved in mRNA localization
     mRNA cycle factors
       Common to processing body (P body) and stress granule
         100412678 XRN1; 5'-3' exoribonuclease 1
         100390940 AGO2; argonaute 2, RISC catalytic component
         100389074 AGO4; argonaute 4, RISC catalytic component
         100387270 AGO3; protein argonaute-3
         100386910 AGO1; protein argonaute-1
         100395777 EIF4E; eukaryotic translation initiation factor 4E
         100415426 EIF4E1B; eukaryotic translation initiation factor 4E family member 1B
         100401386 EIF4E2; eukaryotic translation initiation factor 4E family member 2
         100388434 UPF1; UPF1, RNA helicase and ATPase
         100407547 ATP-dependent RNA helicase DDX3Y
         100387734 DDX3Y; DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
         100399667 DDX3X; DEAD-box helicase 3, X-linked
         100408438 DDX6; DEAD-box helicase 6
         100410023 MEX3C; mex-3 RNA binding family member C
         100410413 MEX3A; mex-3 RNA binding family member A
         100400135 MEX3D; mex-3 RNA binding family member D
         100403790 MEX3B; mex-3 RNA binding family member B
         100409995 FASTK; Fas activated serine/threonine kinase
         100390973 LSM14B; LSM family member 14B
         100411266 LSM14A; LSM14A, mRNA processing body assembly factor
         100415053 poly(rC)-binding protein 1-like
         100388387 poly(rC)-binding protein 1
         100405918 PCBP1; poly(rC) binding protein 1
         103788804 poly(rC)-binding protein 1-like
         100409398 PCBP2; poly(rC) binding protein 2
         100401646 YBX1; nuclease-sensitive element-binding protein 1
         100413674 nuclease-sensitive element-binding protein 1-like
         100399549 WTIP; Wilms tumor 1 interacting protein
         100392345 AJUBA; ajuba LIM protein
         100407979 LIMD1; LIM domains containing 1
         100394908 LIM domain-containing protein 1
         100394516 APOBEC1; apolipoprotein B mRNA editing enzyme catalytic subunit 1
         100397263 DNA dC->dU-editing enzyme APOBEC-3C-like
         100412662 DNA dC->dU-editing enzyme APOBEC-3G-like
         100895397 DNA dC->dU-editing enzyme APOBEC-3G-like
         100413502 DNA dC->dU-editing enzyme APOBEC-3G-like
         100393962 DNA dC->dU-editing enzyme APOBEC-3G-like
         100412309 APOBEC3H; apolipoprotein B mRNA editing enzyme catalytic subunit 3H
         100413381 DNA dC->dU-editing enzyme APOBEC-3G-like
         100397628 APOBEC3G; apolipoprotein B mRNA editing enzyme catalytic subunit 3G
         100386727 DNA dC->dU-editing enzyme APOBEC-3G-like
         100387905 APOBEC3A; apolipoprotein B mRNA editing enzyme catalytic subunit 3A
         100396313 MOV10; Mov10 RISC complex RNA helicase
         100398839 proline-rich nuclear receptor coactivator 2-like
         100896925 PNRC2; proline rich nuclear receptor coactivator 2
         100389813 proline-rich nuclear receptor coactivator 2-like
         100413875 TNPO1; transportin 1
         100410734 SMG1; SMG1, nonsense mediated mRNA decay associated PI3K related kinase
         100403998 SMG5; SMG5, nonsense mediated mRNA decay factor
         100395317 SMG6; SMG6, nonsense mediated mRNA decay factor
         100399275 SMG7; SMG7, nonsense mediated mRNA decay factor
         100397247 ZFP36; ZFP36 ring finger protein
         100386590 ZFP36L2; ZFP36 ring finger protein like 2
         100405281 ZFP36L1; ZFP36 ring finger protein like 1
         100388273 protein lin-28 homolog A-like
         100405014 LIN28A; lin-28 homolog A
         100400137 LIN28B; lin-28 homolog B
         100403524 HTT; huntingtin
         100399463 IPO8; importin 8
         100412529 BICC1; BicC family RNA binding protein 1
         100392244 heterogeneous nuclear ribonucleoprotein A1-like
         100409049 heterogeneous nuclear ribonucleoprotein A1-like
         100403489 heterogeneous nuclear ribonucleoprotein A1-like
         100410389 heterogeneous nuclear ribonucleoprotein A1-like
         100387406 heterogeneous nuclear ribonucleoprotein A3-like
         100411573 heterogeneous nuclear ribonucleoprotein A3-like
         100409067 heterogeneous nuclear ribonucleoprotein A1-like
         100386934 heterogeneous nuclear ribonucleoprotein A1-like 2
         100896651 heterogeneous nuclear ribonucleoprotein A1-like
         100415175 heterogeneous nuclear ribonucleoprotein A1-like
         100397351 heterogeneous nuclear ribonucleoprotein A1-like
         100407564 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3
         100896758 heterogeneous nuclear ribonucleoprotein A1-like
         100414716 heterogeneous nuclear ribonucleoprotein A1-like
         100896791 heterogeneous nuclear ribonucleoprotein A1-like
         100414396 heterogeneous nuclear ribonucleoprotein A1-like
         100398142 heterogeneous nuclear ribonucleoprotein A1-like
         100385123 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1
         100413569 heterogeneous nuclear ribonucleoprotein A1-like
         100398964 heterogeneous nuclear ribonucleoprotein A1-like
         100413454 heterogeneous nuclear ribonucleoprotein A1-like
         100392123 PRKACG; protein kinase cAMP-activated catalytic subunit gamma
         100407753 cAMP-dependent protein kinase catalytic subunit alpha
         100408115 cAMP-dependent protein kinase catalytic subunit gamma-like
         100407692 PRKACB; protein kinase cAMP-activated catalytic subunit beta
         100400737 PRKACA; protein kinase cAMP-activated catalytic subunit alpha
         100393120 LARP1; La ribonucleoprotein domain family member 1
         100407405 LARP1B; La ribonucleoprotein domain family member 1B
K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
K11593 ELF2C; eukaryotic translation initiation factor 2C 
K11593 ELF2C; eukaryotic translation initiation factor 2C 
K11593 ELF2C; eukaryotic translation initiation factor 2C 
K11593 ELF2C; eukaryotic translation initiation factor 2C 
K03259 EIF4E; translation initiation factor 4E 
K03259 EIF4E; translation initiation factor 4E 
K03259 EIF4E; translation initiation factor 4E 
K14326 UPF1; regulator of nonsense transcripts 1 [EC:3.6.4.-] 
K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:3.6.4.13] 
K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:3.6.4.13] 
K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:3.6.4.13] 
K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13] 
K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8] 
K18749 LSM14; protein LSM14 
K18749 LSM14; protein LSM14 
K12889 PCBP1; poly(rC)-binding protein 1 
K12889 PCBP1; poly(rC)-binding protein 1 
K12889 PCBP1; poly(rC)-binding protein 1 
K12889 PCBP1; poly(rC)-binding protein 1 
K13162 PCBP2; poly(rC)-binding protein 2 
K09276 YBX1; Y-box-binding protein 1 
K09276 YBX1; Y-box-binding protein 1 
K16682 AJUBA; LIM domain-containing protein 
K16682 AJUBA; LIM domain-containing protein 
K16682 AJUBA; LIM domain-containing protein 
K16682 AJUBA; LIM domain-containing protein 
K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-] 
K18422 MOV10; helicase MOV-10 [EC:3.6.4.13] 
K18751 PNRC2; proline-rich nuclear receptor coactivator 2 
K18751 PNRC2; proline-rich nuclear receptor coactivator 2 
K18751 PNRC2; proline-rich nuclear receptor coactivator 2 
K18752 TNPO1; transportin-1 
K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
K11125 SMG5; protein SMG5 
K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
K14409 SMG7; protein SMG7 
K15308 TTP; tristetraprolin 
K18753 ZFP36L; butyrate response factor 
K18753 ZFP36L; butyrate response factor 
K18754 LIN28; protein lin-28 
K18754 LIN28; protein lin-28 
K18754 LIN28; protein lin-28 
K04533 HD; huntingtin 
K18755 IPO8; importin-8 
K18756 BICC1; protein bicaudal C 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
K04345 PKA; protein kinase A [EC:2.7.11.11] 
K04345 PKA; protein kinase A [EC:2.7.11.11] 
K04345 PKA; protein kinase A [EC:2.7.11.11] 
K04345 PKA; protein kinase A [EC:2.7.11.11] 
K04345 PKA; protein kinase A [EC:2.7.11.11] 
K18757 LARP1; la-related protein 1 
K18757 LARP1; la-related protein 1 
       P-body specific factors
       Stress granule specific factors
   mRNA degradation factors
 
 Prokaryotic Type

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Last updated: February 20, 2019