KEGG Orthology (KO) - Dickeya parazeae

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     KO
 09100 Metabolism
 
   09101 Carbohydrate metabolism
 
   09102 Energy metabolism
     00190 Oxidative phosphorylation [PATH:ddc00190]
     00195 Photosynthesis
     00196 Photosynthesis - antenna proteins
     00710 Carbon fixation in photosynthetic organisms
     00720 Carbon fixation pathways in prokaryotes
     00680 Methane metabolism [PATH:ddc00680]
     00910 Nitrogen metabolism [PATH:ddc00910]
     00920 Sulfur metabolism [PATH:ddc00920]
       Dd586_3125 sulfate ABC transporter, periplasmic sulfate-binding protein
       Dd586_3124 sulfate ABC transporter, inner membrane subunit CysT
       Dd586_3123 sulfate ABC transporter, inner membrane subunit CysW
       Dd586_3122 sulfate ABC transporter, ATPase subunit
       Dd586_1637 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein
       Dd586_1635 binding-protein-dependent transport systems inner membrane component
       Dd586_1634 ABC transporter related protein
       Dd586_1636 alkanesulfonate monooxygenase, FMNH(2)-dependent
       Dd586_1638 FMN reductase
       Dd586_3311 sulfate adenylyltransferase, large subunit
       Dd586_3312 sulfate adenylyltransferase, small subunit
       Dd586_3310 adenylylsulfate kinase
       Dd586_3363 3'(2'),5'-bisphosphate nucleotidase
       Dd586_3314 phosphoadenosine phosphosulfate reductase
       Dd586_3316 sulfite reductase (NADPH) flavoprotein, alpha chain
       Dd586_3315 sulfite reductase (NADPH) hemoprotein, beta-component
       Dd586_3061 Rhodanese domain protein
       Dd586_3835 Thiosulfate sulfurtransferase
       Dd586_0172 serine O-acetyltransferase
       Dd586_1039 Pyridoxal-5'-phosphate-dependent protein beta subunit
       Dd586_0817 cysteine synthase A
       Dd586_3695 homoserine O-succinyltransferase
       Dd586_0382 alpha/beta hydrolase fold protein
       Dd586_3933 O-succinylhomoserine (thiol)-lyase
K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
K02046 cysU; sulfate/thiosulfate transport system permease protein
K02047 cysW; sulfate/thiosulfate transport system permease protein
K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
K15553 ssuA; sulfonate transport system substrate-binding protein
K15554 ssuC; sulfonate transport system permease protein
K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
K00299 ssuE; FMN reductase [EC:1.5.1.38]
K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
K01738 cysK; cysteine synthase [EC:2.5.1.47]
K01738 cysK; cysteine synthase [EC:2.5.1.47]
K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
 
   09103 Lipid metabolism
 
   09104 Nucleotide metabolism
 
   09105 Amino acid metabolism
 
   09106 Metabolism of other amino acids
 
   09107 Glycan biosynthesis and metabolism
 
   09108 Metabolism of cofactors and vitamins
 
   09109 Metabolism of terpenoids and polyketides
 
   09110 Biosynthesis of other secondary metabolites
 
   09111 Xenobiotics biodegradation and metabolism
 
   09112 Not included in regular maps
 
 09120 Genetic Information Processing
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:ddc03000]
     03021 Transcription machinery [BR:ddc03021]
     03019 Messenger RNA biogenesis [BR:ddc03019]
     03041 Spliceosome
     03011 Ribosome [BR:ddc03011]
     03009 Ribosome biogenesis [BR:ddc03009]
     03016 Transfer RNA biogenesis [BR:ddc03016]
       Dd586_0010 ribonuclease Z
       Dd586_2225 ribonuclease T2
       Dd586_3347 polynucleotide adenylyltransferase/metal dependent phosphohydrolase
       Dd586_0013 protein of unknown function UPF0027
       Dd586_3119 glutamyl-tRNA synthetase
       Dd586_3301 prolyl-tRNA synthetase
       Dd586_3588 isoleucyl-tRNA synthetase
       Dd586_1143 leucyl-tRNA synthetase
       Dd586_1228 methionyl-tRNA synthetase
       Dd586_1161 glutaminyl-tRNA synthetase
       Dd586_2210 arginyl-tRNA synthetase
       Dd586_0641 lysyl-tRNA synthetase
       Dd586_2202 aspartyl-tRNA synthetase
       Dd586_3184 alanyl-tRNA synthetase
       Dd586_1631 asparaginyl-tRNA synthetase
       Dd586_1943 threonyl-tRNA synthetase
       Dd586_2295 seryl-tRNA synthetase
       Dd586_2966 cysteinyl-tRNA synthetase
       Dd586_0389 valyl-tRNA synthetase
       Dd586_3055 histidyl-tRNA synthetase
       Dd586_1947 phenylalanyl-tRNA synthetase, alpha subunit
       Dd586_3354 Phenylalanine--tRNA ligase
       Dd586_1948 phenylalanyl-tRNA synthetase, beta subunit
       Dd586_1678 tyrosyl-tRNA synthetase
       Dd586_3795 tryptophanyl-tRNA synthetase
       Dd586_4121 D-tyrosyl-tRNA(Tyr) deacylase
       Dd586_1596 histidine triad (HIT) protein
       Dd586_0888 tRNA (guanine-N(7)-)-methyltransferase
       Dd586_3300 protein of unknown function UPF0066
       Dd586_2773 tRNA pseudouridine synthase A
       Dd586_0602 tRNA pseudouridine synthase B
       Dd586_3305 tRNA pseudouridine synthase D TruD
       Dd586_3070 cysteine desulfurase IscS
       Dd586_3699 SUA5/yciO/yrdC domain protein
       Dd586_3644 tRNA delta(2)-isopentenylpyrophosphate transferase
       Dd586_4212 tRNA modification GTPase TrmE
       Dd586_4150 glucose inhibited division protein A
       Dd586_3363 3'(2'),5'-bisphosphate nucleotidase
       Dd586_4215 ribonuclease P protein component
       Dd586_R0015 rnpB; RNA component of RNaseP
       Dd586_1670 ribonuclease T
       Dd586_0144 ribonuclease PH
       Dd586_1694 exoribonuclease II
       Dd586_1985 ribonuclease D
       Dd586_3136 2'-5' RNA ligase
       Dd586_3954 phosphotransferase KptA/Tpt1
       Dd586_3612 ABC transporter related protein
       Dd586_0044 glycyl-tRNA synthetase, alpha subunit
       Dd586_0045 glycyl-tRNA synthetase, beta subunit
       Dd586_3139 Glutamate--tRNA ligase
       Dd586_1071 ybaK/ebsC protein
       Dd586_3094 CMP/dCMP deaminase zinc-binding protein
       Dd586_3430 TIM-barrel protein, yjbN family
       Dd586_0254 TIM-barrel protein, nifR3 family
       Dd586_2451 dihydrouridine synthase DuS
       Dd586_1153 tRNA-i(6)A37 thiotransferase enzyme MiaB
       Dd586_2205 methyltransferase
       Dd586_2206 methyltransferase
       Dd586_2242 Methyltransferase type 11
       Dd586_3604 RNA methyltransferase, TrmH family, group 1
       Dd586_3925 tRNA (uracil-5-)-methyltransferase
       Dd586_3174 tRNA (guanine-N1)-methyltransferase
       Dd586_3289 tRNA/rRNA methyltransferase (SpoU)
       Dd586_4116 tRNA guanosine-2'-O-methyltransferase
       Dd586_3072 RNA methyltransferase, TrmH family, group 1
       Dd586_4008 tRNA/rRNA methyltransferase (SpoU)
       Dd586_3114 methyltransferase small domain protein
       Dd586_0923 pseudouridine synthase
       Dd586_3568 pseudouridine synthase
       Dd586_1931 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
       Dd586_1735 PP-loop domain protein
       Dd586_4048 SirA family protein
       Dd586_3744 sulfur relay protein TusB/DsrH
       Dd586_3745 sulfur relay protein TusC/DsrF
       Dd586_3746 sulfur relay protein TusD/DsrE
       Dd586_2988 sulfur relay protein, TusE/DsrC/DsvC family
       Dd586_3068 iron-sulfur cluster assembly protein IscA
       Dd586_0632 folate-binding protein YgfZ
       Dd586_1058 tRNA-hydroxylase
       Dd586_2783 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC
       Dd586_1002 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase
       Dd586_1038 exsB protein
       Dd586_3320 6-pyruvoyl tetrahydropterin synthase
       Dd586_3321 Radical SAM domain protein
       Dd586_0852 7-cyano-7-deazaguanine reductase
       Dd586_3650 iron-sulfur cluster binding protein
       Dd586_2448 protein of unknown function DUF208
       Dd586_1003 queuine tRNA-ribosyltransferase
       Dd586_1018 thiamine biosynthesis/tRNA modification protein ThiI
       Dd586_0947 tRNA(Ile)-lysidine synthetase
       Dd586_1120 protein of unknown function DUF699 ATPase putative
       Dd586_1982 peptidase M22 glycoprotease
       Dd586_0579 metalloendopeptidase, glycoprotease family
       Dd586_3647 protein of unknown function UPF0079
       Dd586_0912 UBA/THIF-type NAD/FAD binding protein
       Dd586_3384 ribonuclease R
       Dd586_0604 polyribonucleotide nucleotidyltransferase
K00784 rnz; ribonuclease Z [EC:3.1.26.11]
K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
K01978 rnpB; M1 RNA
K03683 rnt; ribonuclease T [EC:3.1.13.-]
K00989 rph; ribonuclease PH [EC:2.7.7.56]
K01147 rnb; exoribonuclease II [EC:3.1.13.1]
K03684 rnd; ribonuclease D [EC:3.1.13.5]
K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
K06020 ettA; energy-dependent translational throttle protein EttA
K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
K07237 tusB; tRNA 2-thiouridine synthesizing protein B
K07236 tusC; tRNA 2-thiouridine synthesizing protein C
K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
K13628 iscA; iron-sulfur cluster assembly protein
K06980 ygfZ; tRNA-modifying protein YgfZ
K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
K12573 rnr; ribonuclease R [EC:3.1.13.1]
K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
     03012 Translation factors [BR:ddc03012]
     03110 Chaperones and folding catalysts [BR:ddc03110]
     04131 Membrane trafficking [BR:ddc04131]
     04121 Ubiquitin system [BR:ddc04121]
     03051 Proteasome [BR:ddc03051]
     03032 DNA replication proteins [BR:ddc03032]
     03036 Chromosome and associated proteins [BR:ddc03036]
     03400 DNA repair and recombination proteins [BR:ddc03400]
     03029 Mitochondrial biogenesis [BR:ddc03029]
 
   09183 Protein families: signaling and cellular processes
 
   09185 Viral protein families
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: April 16, 2024