Transcription Machinery - Oryza sativa japonica (Japanese rice) (RAPDB)

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 Eukaryotic type
   RNA polymerase II system
     RNA polymerase II
     Basal transcription factors
       TFIIA
       TFIIB
       TFIID
         Os03t0657000-01 Os03g0657000; TATA-binding protein TBP2.
         Os10t0432300-01 Os10g0432300; Similar to Transcription factor IID, TFIID (Fragment).
         Os12t0580300-01 Os12g0580300; Similar to TATA-binding protein TBP2.
         Os06t0645800-01 Os06g0645800; Similar to Transcription initiation factor TFIID subunit 1.
         Os03t0441000-01 Os03g0441000; Similar to Transcription initiation factor TFIID component TAF4 family protein, expressed.
         Os02t0654400-01 Os02g0654400; Transcription initiation factor TFIID component TAF4 domain containing protein.
         Os06t0649500-01 Os06g0649500; WD40 repeat-like domain containing protein.
         Os01t0510800-01 Os01g0510800; Histone-fold domain containing protein.
         Os05t0347000-01 Os05g0347000; TAFII55 protein conserved region domain containing protein.
         Os01t0648500-01 Os01g0648500; Similar to Transcription initiation factor TFIID subunit 7.
         Os12t0574800-02 Os12g0574800; Conserved hypothetical protein.
         Os03t0603300-01 Os03g0603300; Similar to Bromodomain associated family protein, expressed.
         Os02t0699900-01 Os02g0699900; Bromodomain transcription factor containing protein.
         Os03t0408500-01 Os03g0408500; Similar to Transcription initiation factor IID, 31kD subunit family protein, expressed.
         Os09t0431500-01 Os09g0431500; Similar to TATA box-binding protein associated factor 10.
         Os01t0680400-01 Os01g0680400; Histone-fold domain containing protein.
         Os01t0846900-01 Os01g0846900; Histone-fold domain containing protein.
         Os01t0858500-01 Os01g0858500; Similar to Transcription initiation factor TFIID subunit 12 (Transcription initiation factor TFIID 20/15 kDa subunits) (TAFII-20/TAFII-15) (TAFII20/TAFII15).
         Os01t0338100-00 Os01g0338100; Similar to Transcription initiation factor IID, 18kD subunit family protein.
K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
K03129 TAF4; transcription initiation factor TFIID subunit 4 
K03129 TAF4; transcription initiation factor TFIID subunit 4 
K03130 TAF5; transcription initiation factor TFIID subunit 5 
K03131 TAF6; transcription initiation factor TFIID subunit 6 
K03132 TAF7; transcription initiation factor TFIID subunit 7 
K03132 TAF7; transcription initiation factor TFIID subunit 7 
K14649 TAF8; transcription initiation factor TFIID subunit 8 
K14649 TAF8; transcription initiation factor TFIID subunit 8 
K14649 TAF8; transcription initiation factor TFIID subunit 8 
K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
K03134 TAF10; transcription initiation factor TFIID subunit 10 
K03135 TAF11; transcription initiation factor TFIID subunit 11 
K03126 TAF12; transcription initiation factor TFIID subunit 12 
K03126 TAF12; transcription initiation factor TFIID subunit 12 
K03127 TAF13; transcription initiation factor TFIID subunit 13 
       TFIIE
       TFIIF
       TFIIH
     Mediator complex
     Coactivators
       SAGA/TFTC/STAGA complex
         Os10t0415900-01 Os10g0415900; Similar to General control of amino-acid synthesis 5-like 2 (Fragment).
         Os03t0750800-01 Os03g0750800; Similar to Transcriptional adaptor (Fragment).
         Os03t0441000-01 Os03g0441000; Similar to Transcription initiation factor TFIID component TAF4 family protein, expressed.
         Os02t0654400-01 Os02g0654400; Transcription initiation factor TFIID component TAF4 domain containing protein.
         Os06t0649500-01 Os06g0649500; WD40 repeat-like domain containing protein.
         Os01t0510800-01 Os01g0510800; Histone-fold domain containing protein.
         Os05t0347000-01 Os05g0347000; TAFII55 protein conserved region domain containing protein.
         Os01t0648500-01 Os01g0648500; Similar to Transcription initiation factor TFIID subunit 7.
         Os03t0408500-01 Os03g0408500; Similar to Transcription initiation factor IID, 31kD subunit family protein, expressed.
         Os09t0431500-01 Os09g0431500; Similar to TATA box-binding protein associated factor 10.
         Os01t0846900-01 Os01g0846900; Histone-fold domain containing protein.
         Os01t0858500-01 Os01g0858500; Similar to Transcription initiation factor TFIID subunit 12 (Transcription initiation factor TFIID 20/15 kDa subunits) (TAFII-20/TAFII-15) (TAFII20/TAFII15).
         Os05t0351500-01 Os05g0351500; Sgf11, transcriptional regulation family protein.
         Os12t0290600-01 Os12g0290600; Similar to Dual specificity protein phosphatase 8 (EC 3.1.3.48) (EC 3.1.3.16) (Neuronal tyrosine threonine phosphatase 1).
         Os01t0920200-01 Os01g0920200; Similar to E(Y)2 homolog (DC6) (Enhancer of yellow 2 homolog).
         Os04t0647300-01 Os04g0647300; Similar to H0811D08.10 protein.
         Os07t0203700-01 Os07g0203700; Cleavage and polyadenylation specificity factor, A subunit, C-terminal domain containing protein.
         Os02t0137400-01 Os02g0137400; Similar to Spliceosomal-like protein.
K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
K11314 TADA2A; transcriptional adapter 2-alpha 
K03129 TAF4; transcription initiation factor TFIID subunit 4 
K03129 TAF4; transcription initiation factor TFIID subunit 4 
K03130 TAF5; transcription initiation factor TFIID subunit 5 
K03131 TAF6; transcription initiation factor TFIID subunit 6 
K03132 TAF7; transcription initiation factor TFIID subunit 7 
K03132 TAF7; transcription initiation factor TFIID subunit 7 
K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
K03134 TAF10; transcription initiation factor TFIID subunit 10 
K03126 TAF12; transcription initiation factor TFIID subunit 12 
K03126 TAF12; transcription initiation factor TFIID subunit 12 
K11363 SGF11; SAGA-associated factor 11 
K11364 SGF29; SAGA-associated factor 29 
K11368 ENY2; enhancer of yellow 2 transcription factor 
K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
K12830 SF3B3; splicing factor 3B subunit 3 
K12830 SF3B3; splicing factor 3B subunit 3 
       BAF/PBAF complex
       SWI/SNF complex
       RSC complex
     Other transcription-related factors
   RNA polymerase III system
   RNA polymerase I system
 
 Prokaryotic type

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Last updated: April 8, 2020